RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 B5MCH6 92 aa9.96□□□□□ -0.82
TRIM28-215ENST00000601150 TYMSOSQ8TAI1 123 aa9.96□□□□□ -0.82
TRIM28-215ENST00000601150 COPS9Q8WXC6 57 aa9.96□□□□□ -0.82
TRIM28-215ENST00000601150 CBY1Q9Y3M2 126 aa9.96□□□□□ -0.82
TRIM28-215ENST00000601150 HMCN2Q8NDA2 5059 aa9.96□□□□□ -0.82
TRIM28-215ENST00000601150 SCGB1D1O95968 90 aa9.95□□□□□ -0.82
TRIM28-215ENST00000601150 Q6ZVH6 145 aa9.95□□□□□ -0.82
TRIM28-215ENST00000601150 SMCR5Q8TEV8 140 aa9.95□□□□□ -0.82
TRIM28-215ENST00000601150 ZNF706Q9Y5V0 76 aaPredicted RBP9.95□□□□□ -0.82
TRIM28-215ENST00000601150 IFITM1P13164 125 aa9.94□□□□□ -0.82
TRIM28-215ENST00000601150 OR13C6PQ8NH95 151 aa9.94□□□□□ -0.82
TRIM28-215ENST00000601150 SPRR4Q96PI1 79 aa9.94□□□□□ -0.82
TRIM28-215ENST00000601150 KRTAP13-2Q52LG2 175 aa9.93□□□□□ -0.82
TRIM28-215ENST00000601150 Q6ZRX8 168 aa9.93□□□□□ -0.82
TRIM28-215ENST00000601150 LINC00518Q8N0U6 118 aa9.93□□□□□ -0.82
TRIM28-215ENST00000601150 PPDPFQ9H3Y8 114 aa9.93□□□□□ -0.82
TRIM28-215ENST00000601150 ZNF73O43830 326 aaPredicted RBP9.92□□□□□ -0.82
TRIM28-215ENST00000601150 JOSD1Q15040 202 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-215ENST00000601150 MUSTN1Q8IVN3 82 aa9.9□□□□□ -0.82
TRIM28-215ENST00000601150 HINT1P49773 126 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-215ENST00000601150 Q9BRP9 147 aa9.89□□□□□ -0.83
TRIM28-215ENST00000601150 ERC2-IT1O76042 136 aa9.87□□□□□ -0.83
TRIM28-215ENST00000601150 LINC00483Q53H64 154 aa9.85□□□□□ -0.83
TRIM28-215ENST00000601150 C3orf22Q8N5N4 141 aa9.85□□□□□ -0.83
TRIM28-215ENST00000601150 TSPAN13O95857 204 aa9.84□□□□□ -0.83
TRIM28-215ENST00000601150 LINC00304Q8N9R0 145 aa9.84□□□□□ -0.83
TRIM28-215ENST00000601150 A6NDN8 102 aa9.83□□□□□ -0.84
TRIM28-215ENST00000601150 COX8AP10176 69 aa9.83□□□□□ -0.84
TRIM28-215ENST00000601150 GAGE2AQ6NT46 116 aa9.83□□□□□ -0.84
TRIM28-215ENST00000601150 C6orf99Q4VX62 202 aa9.82□□□□□ -0.84
TRIM28-215ENST00000601150 TRAV13-2A0A0B4J235 113 aa9.81□□□□□ -0.84
TRIM28-215ENST00000601150 COX7BP24311 80 aa9.81□□□□□ -0.84
TRIM28-215ENST00000601150 DLEU1O43261 78 aa9.8□□□□□ -0.84
TRIM28-215ENST00000601150 ELOF1P60002 83 aaKnown RBP9.8□□□□□ -0.84
TRIM28-215ENST00000601150 DHRS4-AS1Q9P1J3 65 aa9.8□□□□□ -0.84
TRIM28-215ENST00000601150 VAMP8Q9BV40 100 aa9.79□□□□□ -0.84
TRIM28-215ENST00000601150 PAM16Q9Y3D7 125 aa9.79□□□□□ -0.84
TRIM28-215ENST00000601150 TRBV7-6A0A0J9YX20 115 aa9.78□□□□□ -0.84
TRIM28-215ENST00000601150 SPATA45Q537H7 98 aa9.78□□□□□ -0.84
TRIM28-215ENST00000601150 A4D1N5 150 aa9.77□□□□□ -0.85
TRIM28-215ENST00000601150 CTAG1AP78358 180 aa9.77□□□□□ -0.85
TRIM28-215ENST00000601150 PRR4Q16378 134 aa9.77□□□□□ -0.85
TRIM28-215ENST00000601150 ST20-AS1Q8NBB2 130 aa9.77□□□□□ -0.85
TRIM28-215ENST00000601150 HIST1H4GQ99525 98 aa9.77□□□□□ -0.85
TRIM28-215ENST00000601150 SPAG11AQ6PDA7 123 aa9.76□□□□□ -0.85
TRIM28-215ENST00000601150 C14orf144Q96I85 54 aa9.76□□□□□ -0.85
TRIM28-215ENST00000601150 TMA7Q9Y2S6 64 aaKnown RBP9.76□□□□□ -0.85
TRIM28-215ENST00000601150 IGLV9-49A0A0B4J1Y8 123 aa9.75□□□□□ -0.85
TRIM28-215ENST00000601150 A0A1B0GWB2 263 aa9.75□□□□□ -0.85
TRIM28-215ENST00000601150 Q8NBF4 154 aa9.75□□□□□ -0.85
TRIM28-215ENST00000601150 MOBPQ13875 183 aa9.74□□□□□ -0.85
TRIM28-215ENST00000601150 C4orf48Q5BLP8 95 aa9.74□□□□□ -0.85
TRIM28-215ENST00000601150 SMIM11BQ8TCY0 68 aa9.74□□□□□ -0.85
TRIM28-215ENST00000601150 SLC25A34Q6PIV7 304 aa9.73□□□□□ -0.85
TRIM28-215ENST00000601150 SSBP3-AS1Q7Z2R9 100 aa9.72□□□□□ -0.85
TRIM28-215ENST00000601150 HIGD1BQ9P298 99 aa9.72□□□□□ -0.85
TRIM28-215ENST00000601150 SPRR1BP22528 89 aa9.71□□□□□ -0.86
TRIM28-215ENST00000601150 PYY3Q5JQD4 70 aa9.7□□□□□ -0.86
TRIM28-215ENST00000601150 LRP2P98164 4655 aa9.69□□□□□ -0.86
TRIM28-215ENST00000601150 C9orf153Q5TBE3 101 aa9.69□□□□□ -0.86
TRIM28-215ENST00000601150 C12orf57Q99622 126 aa9.69□□□□□ -0.86
TRIM28-215ENST00000601150 VAMP3Q15836 100 aa9.68□□□□□ -0.86
TRIM28-215ENST00000601150 TAL2Q16559 108 aa9.68□□□□□ -0.86
TRIM28-215ENST00000601150 C2orf91Q6ZV80 131 aa9.68□□□□□ -0.86
TRIM28-215ENST00000601150 RETNLBQ9BQ08 111 aa9.68□□□□□ -0.86
TRIM28-215ENST00000601150 UBR4Q5T4S7 5183 aa9.67□□□□□ -0.86
TRIM28-215ENST00000601150 SPINK1P00995 79 aa9.67□□□□□ -0.86
TRIM28-215ENST00000601150 NHP2Q9NX24 153 aaKnown RBP9.67□□□□□ -0.86
TRIM28-215ENST00000601150 DEFB105AQ8NG35 78 aa9.66□□□□□ -0.86
TRIM28-215ENST00000601150 LAMTOR3Q9UHA4 124 aa9.66□□□□□ -0.86
TRIM28-215ENST00000601150 TEX49A0A1B0GTD5 131 aa9.65□□□□□ -0.86
TRIM28-215ENST00000601150 SLC25A20O43772 301 aa9.64□□□□□ -0.87
TRIM28-215ENST00000601150 IGLV5-48A0A075B6I7 105 aa9.62□□□□□ -0.87
TRIM28-215ENST00000601150 CFC1BP0CG36 223 aa9.62□□□□□ -0.87
TRIM28-215ENST00000601150 CFC1P0CG37 223 aa9.62□□□□□ -0.87
TRIM28-215ENST00000601150 LINC00575Q6W349 94 aa9.62□□□□□ -0.87
TRIM28-215ENST00000601150 RAB37Q96AX2 223 aa9.62□□□□□ -0.87
TRIM28-215ENST00000601150 LPAP08519 4548 aa9.61□□□□□ -0.87
TRIM28-215ENST00000601150 LINC01547P58512 204 aaPredicted RBP9.61□□□□□ -0.87
TRIM28-215ENST00000601150 RPS29P62273 56 aaKnown RBP9.61□□□□□ -0.87
TRIM28-215ENST00000601150 Q1RN00 199 aa9.61□□□□□ -0.87
TRIM28-215ENST00000601150 CEND1Q8N111 149 aa9.61□□□□□ -0.87
TRIM28-215ENST00000601150 A0A0B4J2C4 111 aa9.6□□□□□ -0.87
TRIM28-215ENST00000601150 IGLV7-46A0A075B6I9 117 aa9.59□□□□□ -0.87
TRIM28-215ENST00000601150 H7C2G1 150 aa9.59□□□□□ -0.87
TRIM28-215ENST00000601150 BVES-AS1Q5T3Y7 98 aa9.59□□□□□ -0.87
TRIM28-215ENST00000601150 TMEM238LA0A1B0GVL6 79 aa9.58□□□□□ -0.88
TRIM28-215ENST00000601150 hADV29S1A0JD25 119 aa9.58□□□□□ -0.88
TRIM28-215ENST00000601150 A6NJY4 79 aa9.58□□□□□ -0.88
TRIM28-215ENST00000601150 SMIM29Q86T20 159 aa9.58□□□□□ -0.88
TRIM28-215ENST00000601150 FP248Q71RG6 208 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-215ENST00000601150 Q8N377 158 aa9.57□□□□□ -0.88
TRIM28-215ENST00000601150 TPRXLQ17RH7 258 aa9.55□□□□□ -0.88
TRIM28-215ENST00000601150 Q6ZQY7 126 aa9.55□□□□□ -0.88
TRIM28-215ENST00000601150 PRO1933Q9H354 126 aa9.55□□□□□ -0.88
TRIM28-215ENST00000601150 FXYD2P54710 66 aa9.54□□□□□ -0.88
TRIM28-215ENST00000601150 HSD52Q0P140 79 aa9.54□□□□□ -0.88
TRIM28-215ENST00000601150 PRO1854Q9UHT4 67 aa9.54□□□□□ -0.88
TRIM28-215ENST00000601150 UQCR10Q9UDW1 63 aa9.53□□□□□ -0.88
TRIM28-215ENST00000601150 HRCT1Q6UXD1 115 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms