RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 KRTAP4-16G5E9R7 235 aaPredicted RBP8.95□□□□□ -0.98
UPF1-202ENST00000594243 CRYGAP11844 174 aa8.95□□□□□ -0.98
UPF1-202ENST00000594243 PPDPFQ9H3Y8 114 aa8.95□□□□□ -0.98
UPF1-202ENST00000594243 TRAV23DV6A0A075B6W5 121 aa8.94□□□□□ -0.98
UPF1-202ENST00000594243 OR13C6PQ8NH95 151 aa8.94□□□□□ -0.98
UPF1-202ENST00000594243 FAM229BQ4G0N7 80 aa8.93□□□□□ -0.98
UPF1-202ENST00000594243 B5MCH6 92 aa8.92□□□□□ -0.98
UPF1-202ENST00000594243 HINT1P49773 126 aaPredicted RBP8.92□□□□□ -0.98
UPF1-202ENST00000594243 MUSTN1Q8IVN3 82 aa8.92□□□□□ -0.98
UPF1-202ENST00000594243 ZNF706Q9Y5V0 76 aaPredicted RBP8.92□□□□□ -0.98
UPF1-202ENST00000594243 A0A087X002 238 aa8.91□□□□□ -0.98
UPF1-202ENST00000594243 ZNF73O43830 326 aaPredicted RBP8.91□□□□□ -0.98
UPF1-202ENST00000594243 JOSD1Q15040 202 aaPredicted RBP8.91□□□□□ -0.98
UPF1-202ENST00000594243 SMCR5Q8TEV8 140 aa8.91□□□□□ -0.98
UPF1-202ENST00000594243 ANAPC11Q9NYG5 84 aa8.91□□□□□ -0.98
UPF1-202ENST00000594243 UBR4Q5T4S7 5183 aa8.9□□□□□ -0.98
UPF1-202ENST00000594243 Q6ZRX8 168 aa8.9□□□□□ -0.98
UPF1-202ENST00000594243 TYMSOSQ8TAI1 123 aa8.9□□□□□ -0.98
UPF1-202ENST00000594243 TNXBP22105 4242 aa8.89□□□□□ -0.99
UPF1-202ENST00000594243 SPRR4Q96PI1 79 aa8.88□□□□□ -0.99
UPF1-202ENST00000594243 COX8AP10176 69 aa8.87□□□□□ -0.99
UPF1-202ENST00000594243 A6NDN8 102 aa8.86□□□□□ -0.99
UPF1-202ENST00000594243 DLEU1O43261 78 aa8.85□□□□□ -0.99
UPF1-202ENST00000594243 KRTAP13-2Q52LG2 175 aa8.85□□□□□ -0.99
UPF1-202ENST00000594243 Q9BRP9 147 aa8.85□□□□□ -0.99
UPF1-202ENST00000594243 TRAV13-2A0A0B4J235 113 aa8.84□□□□□ -0.99
UPF1-202ENST00000594243 SPATA45Q537H7 98 aa8.84□□□□□ -0.99
UPF1-202ENST00000594243 VAMP8Q9BV40 100 aa8.84□□□□□ -0.99
UPF1-202ENST00000594243 TMA7Q9Y2S6 64 aaKnown RBP8.84□□□□□ -0.99
UPF1-202ENST00000594243 PAM16Q9Y3D7 125 aa8.84□□□□□ -0.99
UPF1-202ENST00000594243 ERC2-IT1O76042 136 aa8.82□□□□□ -1
UPF1-202ENST00000594243 C14orf144Q96I85 54 aa8.82□□□□□ -1
UPF1-202ENST00000594243 HIST1H4GQ99525 98 aa8.82□□□□□ -1
UPF1-202ENST00000594243 TRBV7-6A0A0J9YX20 115 aa8.81□□□□□ -1
UPF1-202ENST00000594243 COX7BP24311 80 aa8.81□□□□□ -1
UPF1-202ENST00000594243 C6orf99Q4VX62 202 aa8.81□□□□□ -1
UPF1-202ENST00000594243 LINC00483Q53H64 154 aa8.81□□□□□ -1
UPF1-202ENST00000594243 GAGE2AQ6NT46 116 aa8.81□□□□□ -1
UPF1-202ENST00000594243 DHRS4-AS1Q9P1J3 65 aa8.81□□□□□ -1
UPF1-202ENST00000594243 A4D1N5 150 aa8.8□□□□□ -1
UPF1-202ENST00000594243 ELOF1P60002 83 aaKnown RBP8.79□□□□□ -1
UPF1-202ENST00000594243 SLC25A34Q6PIV7 304 aa8.79□□□□□ -1
UPF1-202ENST00000594243 C3orf22Q8N5N4 141 aa8.79□□□□□ -1
UPF1-202ENST00000594243 TSPAN13O95857 204 aa8.78□□□□□ -1
UPF1-202ENST00000594243 LINC00304Q8N9R0 145 aa8.78□□□□□ -1
UPF1-202ENST00000594243 HIGD1BQ9P298 99 aa8.78□□□□□ -1
UPF1-202ENST00000594243 A0A1B0GWB2 263 aa8.77□□□□□ -1.01
UPF1-202ENST00000594243 CTAG1AP78358 180 aa8.77□□□□□ -1.01
UPF1-202ENST00000594243 PYY3Q5JQD4 70 aa8.77□□□□□ -1.01
UPF1-202ENST00000594243 SPAG11AQ6PDA7 123 aa8.75□□□□□ -1.01
UPF1-202ENST00000594243 SMIM11BQ8TCY0 68 aa8.75□□□□□ -1.01
UPF1-202ENST00000594243 LRP2P98164 4655 aa8.75□□□□□ -1.01
UPF1-202ENST00000594243 VAMP3Q15836 100 aa8.74□□□□□ -1.01
UPF1-202ENST00000594243 C4orf48Q5BLP8 95 aa8.74□□□□□ -1.01
UPF1-202ENST00000594243 ST20-AS1Q8NBB2 130 aa8.74□□□□□ -1.01
UPF1-202ENST00000594243 SSBP3-AS1Q7Z2R9 100 aa8.73□□□□□ -1.01
UPF1-202ENST00000594243 IGLV9-49A0A0B4J1Y8 123 aa8.72□□□□□ -1.01
UPF1-202ENST00000594243 C2orf91Q6ZV80 131 aa8.72□□□□□ -1.01
UPF1-202ENST00000594243 NHP2Q9NX24 153 aaKnown RBP8.72□□□□□ -1.01
UPF1-202ENST00000594243 SPRR1BP22528 89 aa8.71□□□□□ -1.02
UPF1-202ENST00000594243 TAL2Q16559 108 aa8.71□□□□□ -1.02
UPF1-202ENST00000594243 C12orf57Q99622 126 aa8.71□□□□□ -1.02
UPF1-202ENST00000594243 MOBPQ13875 183 aa8.7□□□□□ -1.02
UPF1-202ENST00000594243 PRR4Q16378 134 aa8.7□□□□□ -1.02
UPF1-202ENST00000594243 Q8NBF4 154 aa8.7□□□□□ -1.02
UPF1-202ENST00000594243 SLC25A20O43772 301 aa8.69□□□□□ -1.02
UPF1-202ENST00000594243 TEX49A0A1B0GTD5 131 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 CFC1BP0CG36 223 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 CFC1P0CG37 223 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 C9orf153Q5TBE3 101 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 CEND1Q8N111 149 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 DEFB105AQ8NG35 78 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 RAB37Q96AX2 223 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 LAMTOR3Q9UHA4 124 aa8.68□□□□□ -1.02
UPF1-202ENST00000594243 TMEM238LA0A1B0GVL6 79 aa8.67□□□□□ -1.02
UPF1-202ENST00000594243 A6NJY4 79 aa8.67□□□□□ -1.02
UPF1-202ENST00000594243 SPINK1P00995 79 aa8.67□□□□□ -1.02
UPF1-202ENST00000594243 BVES-AS1Q5T3Y7 98 aa8.67□□□□□ -1.02
UPF1-202ENST00000594243 A0A0B4J2C4 111 aa8.65□□□□□ -1.02
UPF1-202ENST00000594243 LINC00575Q6W349 94 aa8.65□□□□□ -1.02
UPF1-202ENST00000594243 IGLV5-48A0A075B6I7 105 aa8.63□□□□□ -1.03
UPF1-202ENST00000594243 hADV29S1A0JD25 119 aa8.63□□□□□ -1.03
UPF1-202ENST00000594243 UQCR10Q9UDW1 63 aa8.63□□□□□ -1.03
UPF1-202ENST00000594243 H7C2G1 150 aa8.62□□□□□ -1.03
UPF1-202ENST00000594243 RPS29P62273 56 aaKnown RBP8.62□□□□□ -1.03
UPF1-202ENST00000594243 RNF213Q63HN8 5207 aa8.62□□□□□ -1.03
UPF1-202ENST00000594243 LINC01547P58512 204 aaPredicted RBP8.61□□□□□ -1.03
UPF1-202ENST00000594243 HSD52Q0P140 79 aa8.61□□□□□ -1.03
UPF1-202ENST00000594243 Q1RN00 199 aa8.61□□□□□ -1.03
UPF1-202ENST00000594243 RETNLBQ9BQ08 111 aa8.61□□□□□ -1.03
UPF1-202ENST00000594243 PRO1854Q9UHT4 67 aa8.61□□□□□ -1.03
UPF1-202ENST00000594243 FXYD2P54710 66 aa8.6□□□□□ -1.03
UPF1-202ENST00000594243 H0YGX0 51 aa8.59□□□□□ -1.03
UPF1-202ENST00000594243 SNCGO76070 127 aa8.59□□□□□ -1.03
UPF1-202ENST00000594243 SMIM29Q86T20 159 aa8.59□□□□□ -1.03
UPF1-202ENST00000594243 Q8N377 158 aa8.59□□□□□ -1.03
UPF1-202ENST00000594243 PRO1933Q9H354 126 aa8.58□□□□□ -1.04
UPF1-202ENST00000594243 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.57□□□□□ -1.04
UPF1-202ENST00000594243 Q6ZQY7 126 aa8.57□□□□□ -1.04
UPF1-202ENST00000594243 IGLV7-46A0A075B6I9 117 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms