RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 Q9BRP9 147 aa10.72□□□□□ -0.69
SHKBP1-202ENST00000593764 ZNF706Q9Y5V0 76 aaPredicted RBP10.72□□□□□ -0.69
SHKBP1-202ENST00000593764 ANKRD39Q53RE8 183 aa10.71□□□□□ -0.69
SHKBP1-202ENST00000593764 C20orf202A1L168 122 aa10.7□□□□□ -0.7
SHKBP1-202ENST00000593764 Q6ZRX8 168 aa10.7□□□□□ -0.7
SHKBP1-202ENST00000593764 ATOH7Q8N100 152 aa10.7□□□□□ -0.7
SHKBP1-202ENST00000593764 SPANXCQ9NY87 97 aa10.7□□□□□ -0.7
SHKBP1-202ENST00000593764 TRAV23DV6A0A075B6W5 121 aa10.69□□□□□ -0.7
SHKBP1-202ENST00000593764 LINC00483Q53H64 154 aa10.69□□□□□ -0.7
SHKBP1-202ENST00000593764 PPDPFQ9H3Y8 114 aa10.69□□□□□ -0.7
SHKBP1-202ENST00000593764 HIST3H2BBQ8N257 126 aa10.68□□□□□ -0.7
SHKBP1-202ENST00000593764 ZNF73O43830 326 aaPredicted RBP10.67□□□□□ -0.7
SHKBP1-202ENST00000593764 CTAG1AP78358 180 aa10.66□□□□□ -0.7
SHKBP1-202ENST00000593764 HIST1H2BLQ99880 126 aa10.66□□□□□ -0.7
SHKBP1-202ENST00000593764 GAGE2AQ6NT46 116 aa10.65□□□□□ -0.7
SHKBP1-202ENST00000593764 SPANXDQ9BXN6 97 aa10.65□□□□□ -0.7
SHKBP1-202ENST00000593764 PCP2Q8IVA1 136 aa10.64□□□□□ -0.71
SHKBP1-202ENST00000593764 RETNLBQ9BQ08 111 aa10.64□□□□□ -0.71
SHKBP1-202ENST00000593764 AKR1D1P51857 326 aa10.63□□□□□ -0.71
SHKBP1-202ENST00000593764 SCGB1D4Q6XE38 83 aa10.63□□□□□ -0.71
SHKBP1-202ENST00000593764 OR13C6PQ8NH95 151 aa10.63□□□□□ -0.71
SHKBP1-202ENST00000593764 JOSD1Q15040 202 aaPredicted RBP10.62□□□□□ -0.71
SHKBP1-202ENST00000593764 SPAG11AQ6PDA7 123 aa10.61□□□□□ -0.71
SHKBP1-202ENST00000593764 Q8NBF4 154 aa10.61□□□□□ -0.71
SHKBP1-202ENST00000593764 CBY1Q9Y3M2 126 aa10.61□□□□□ -0.71
SHKBP1-202ENST00000593764 S100A2P29034 98 aa10.6□□□□□ -0.71
SHKBP1-202ENST00000593764 LINC00518Q8N0U6 118 aa10.6□□□□□ -0.71
SHKBP1-202ENST00000593764 A6NJY4 79 aa10.59□□□□□ -0.71
SHKBP1-202ENST00000593764 SNRPEP62304 92 aaKnown RBP10.59□□□□□ -0.71
SHKBP1-202ENST00000593764 IFITM1P13164 125 aa10.58□□□□□ -0.72
SHKBP1-202ENST00000593764 HINT1P49773 126 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-202ENST00000593764 Q6ZVH6 145 aa10.57□□□□□ -0.72
SHKBP1-202ENST00000593764 ST20-AS1Q8NBB2 130 aa10.57□□□□□ -0.72
SHKBP1-202ENST00000593764 IGLV9-49A0A0B4J1Y8 123 aa10.56□□□□□ -0.72
SHKBP1-202ENST00000593764 S100A6P06703 90 aa10.56□□□□□ -0.72
SHKBP1-202ENST00000593764 MUSTN1Q8IVN3 82 aa10.56□□□□□ -0.72
SHKBP1-202ENST00000593764 MOBPQ13875 183 aa10.55□□□□□ -0.72
SHKBP1-202ENST00000593764 COPS9Q8WXC6 57 aa10.55□□□□□ -0.72
SHKBP1-202ENST00000593764 C5orf52A6NGY3 159 aa10.54□□□□□ -0.72
SHKBP1-202ENST00000593764 C6orf99Q4VX62 202 aa10.54□□□□□ -0.72
SHKBP1-202ENST00000593764 SSBP3-AS1Q7Z2R9 100 aa10.54□□□□□ -0.72
SHKBP1-202ENST00000593764 ELOF1P60002 83 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-202ENST00000593764 IGLV7-46A0A075B6I9 117 aa10.52□□□□□ -0.73
SHKBP1-202ENST00000593764 SPINK1P00995 79 aa10.52□□□□□ -0.73
SHKBP1-202ENST00000593764 DHRS4-AS1Q9P1J3 65 aa10.52□□□□□ -0.73
SHKBP1-202ENST00000593764 COX7BP24311 80 aa10.51□□□□□ -0.73
SHKBP1-202ENST00000593764 MUC2Q02817 5179 aa10.51□□□□□ -0.73
SHKBP1-202ENST00000593764 TPRXLQ17RH7 258 aa10.5□□□□□ -0.73
SHKBP1-202ENST00000593764 HSBP1L1C9JCN9 74 aa10.49□□□□□ -0.73
SHKBP1-202ENST00000593764 SPRR1BP22528 89 aa10.49□□□□□ -0.73
SHKBP1-202ENST00000593764 TRBV7-6A0A0J9YX20 115 aa10.48□□□□□ -0.73
SHKBP1-202ENST00000593764 A6NDN8 102 aa10.48□□□□□ -0.73
SHKBP1-202ENST00000593764 RPS29P62273 56 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-202ENST00000593764 SCGB1D1O95968 90 aa10.45□□□□□ -0.74
SHKBP1-202ENST00000593764 C9orf153Q5TBE3 101 aa10.45□□□□□ -0.74
SHKBP1-202ENST00000593764 FP248Q71RG6 208 aaPredicted RBP10.45□□□□□ -0.74
SHKBP1-202ENST00000593764 TRAV13-2A0A0B4J235 113 aa10.44□□□□□ -0.74
SHKBP1-202ENST00000593764 A0A1B0GWB2 263 aa10.44□□□□□ -0.74
SHKBP1-202ENST00000593764 Q8N377 158 aa10.44□□□□□ -0.74
SHKBP1-202ENST00000593764 SMIM11BQ8TCY0 68 aa10.43□□□□□ -0.74
SHKBP1-202ENST00000593764 CDIP1Q9H305 208 aa10.42□□□□□ -0.74
SHKBP1-202ENST00000593764 SLC25A34Q6PIV7 304 aa10.41□□□□□ -0.74
SHKBP1-202ENST00000593764 MUC17Q685J3 4493 aa10.4□□□□□ -0.74
SHKBP1-202ENST00000593764 A4D1N5 150 aa10.4□□□□□ -0.74
SHKBP1-202ENST00000593764 TAL2Q16559 108 aa10.4□□□□□ -0.74
SHKBP1-202ENST00000593764 DEFB105AQ8NG35 78 aa10.4□□□□□ -0.74
SHKBP1-202ENST00000593764 LINC01547P58512 204 aaPredicted RBP10.39□□□□□ -0.75
SHKBP1-202ENST00000593764 LAMTOR3Q9UHA4 124 aa10.39□□□□□ -0.75
SHKBP1-202ENST00000593764 TEX49A0A1B0GTD5 131 aa10.38□□□□□ -0.75
SHKBP1-202ENST00000593764 COX8AP10176 69 aa10.38□□□□□ -0.75
SHKBP1-202ENST00000593764 KRTAP13-3Q3SY46 172 aa10.38□□□□□ -0.75
SHKBP1-202ENST00000593764 SLC25A20O43772 301 aa10.37□□□□□ -0.75
SHKBP1-202ENST00000593764 SMIM29Q86T20 159 aa10.37□□□□□ -0.75
SHKBP1-202ENST00000593764 IGLV5-48A0A075B6I7 105 aa10.36□□□□□ -0.75
SHKBP1-202ENST00000593764 Q1RN00 199 aa10.36□□□□□ -0.75
SHKBP1-202ENST00000593764 TMA7Q9Y2S6 64 aaKnown RBP10.36□□□□□ -0.75
SHKBP1-202ENST00000593764 DLEU1O43261 78 aa10.35□□□□□ -0.75
SHKBP1-202ENST00000593764 HIST1H4GQ99525 98 aa10.33□□□□□ -0.76
SHKBP1-202ENST00000593764 KRTAP3-3Q9BYR6 98 aa10.33□□□□□ -0.76
SHKBP1-202ENST00000593764 KRTAP3-2Q9BYR7 98 aa10.33□□□□□ -0.76
SHKBP1-202ENST00000593764 HRCT1Q6UXD1 115 aa10.32□□□□□ -0.76
SHKBP1-202ENST00000593764 C14orf144Q96I85 54 aa10.32□□□□□ -0.76
SHKBP1-202ENST00000593764 NHP2Q9NX24 153 aaKnown RBP10.31□□□□□ -0.76
SHKBP1-202ENST00000593764 VAMP3Q15836 100 aa10.3□□□□□ -0.76
SHKBP1-202ENST00000593764 LINC00575Q6W349 94 aa10.3□□□□□ -0.76
SHKBP1-202ENST00000593764 C12orf57Q99622 126 aa10.3□□□□□ -0.76
SHKBP1-202ENST00000593764 PAM16Q9Y3D7 125 aa10.3□□□□□ -0.76
SHKBP1-202ENST00000593764 SPATA45Q537H7 98 aa10.29□□□□□ -0.76
SHKBP1-202ENST00000593764 PRO1933Q9H354 126 aa10.29□□□□□ -0.76
SHKBP1-202ENST00000593764 CD164Q04900 197 aa10.28□□□□□ -0.76
SHKBP1-202ENST00000593764 LCE2DQ5TA82 110 aaPredicted RBP10.27□□□□□ -0.77
SHKBP1-202ENST00000593764 HIGD1BQ9P298 99 aa10.27□□□□□ -0.77
SHKBP1-202ENST00000593764 A0A0G2JQZ4 141 aa10.26□□□□□ -0.77
SHKBP1-202ENST00000593764 C2orf91Q6ZV80 131 aa10.25□□□□□ -0.77
SHKBP1-202ENST00000593764 LIMD2Q9BT23 127 aa10.25□□□□□ -0.77
SHKBP1-202ENST00000593764 VAMP8Q9BV40 100 aa10.25□□□□□ -0.77
SHKBP1-202ENST00000593764 hADV29S1A0JD25 119 aa10.24□□□□□ -0.77
SHKBP1-202ENST00000593764 CFC1BP0CG36 223 aa10.24□□□□□ -0.77
SHKBP1-202ENST00000593764 CFC1P0CG37 223 aa10.24□□□□□ -0.77
SHKBP1-202ENST00000593764 Q6ZQY7 126 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms