RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 DIRC1Q969H9 104 aa8.61□□□□□ -1.03
CCDC40-209ENST00000573474 SPCS1Q9Y6A9 102 aa8.61□□□□□ -1.03
CCDC40-209ENST00000573474 DNAH8Q96JB1 4490 aa8.6□□□□□ -1.03
CCDC40-209ENST00000573474 TRBV7-6A0A0J9YX20 115 aa8.59□□□□□ -1.03
CCDC40-209ENST00000573474 K7EP34 96 aa8.59□□□□□ -1.03
CCDC40-209ENST00000573474 Q6ZSA8 131 aa8.59□□□□□ -1.03
CCDC40-209ENST00000573474 GTF2H5Q6ZYL4 71 aa8.59□□□□□ -1.03
CCDC40-209ENST00000573474 FAM30AQ9NZY2 134 aa8.59□□□□□ -1.03
CCDC40-209ENST00000573474 TCL1BO95988 128 aa8.58□□□□□ -1.04
CCDC40-209ENST00000573474 UBE2BP63146 152 aa8.58□□□□□ -1.04
CCDC40-209ENST00000573474 CLEC2BQ92478 149 aa8.58□□□□□ -1.04
CCDC40-209ENST00000573474 COX7BP24311 80 aa8.57□□□□□ -1.04
CCDC40-209ENST00000573474 ATXN8Q156A1 80 aa8.57□□□□□ -1.04
CCDC40-209ENST00000573474 SPRR1AP35321 89 aa8.56□□□□□ -1.04
CCDC40-209ENST00000573474 REG3GQ6UW15 175 aa8.56□□□□□ -1.04
CCDC40-209ENST00000573474 LST1O00453 97 aa8.55□□□□□ -1.04
CCDC40-209ENST00000573474 ELOF1P60002 83 aaKnown RBP8.55□□□□□ -1.04
CCDC40-209ENST00000573474 ETDCA0A1B0GVM5 59 aa8.54□□□□□ -1.04
CCDC40-209ENST00000573474 H3BMG7 143 aa8.54□□□□□ -1.04
CCDC40-209ENST00000573474 UBE2V1Q13404 147 aa8.54□□□□□ -1.04
CCDC40-209ENST00000573474 CIRBP-AS1Q8TBR5 109 aa8.54□□□□□ -1.04
CCDC40-209ENST00000573474 FAM218AQ96MZ4 157 aa8.54□□□□□ -1.04
CCDC40-209ENST00000573474 A0A1B0GX51 115 aa8.53□□□□□ -1.04
CCDC40-209ENST00000573474 KRTAP4-16G5E9R7 235 aaPredicted RBP8.53□□□□□ -1.04
CCDC40-209ENST00000573474 SNCGO76070 127 aa8.53□□□□□ -1.04
CCDC40-209ENST00000573474 LINC00575Q6W349 94 aa8.53□□□□□ -1.04
CCDC40-209ENST00000573474 KRTAP11-1Q8IUC1 163 aa8.53□□□□□ -1.04
CCDC40-209ENST00000573474 RYR3Q15413 4870 aa8.53□□□□□ -1.04
CCDC40-209ENST00000573474 B5MCH6 92 aa8.52□□□□□ -1.05
CCDC40-209ENST00000573474 TRACP01848 142 aa8.52□□□□□ -1.05
CCDC40-209ENST00000573474 SCXQ7RTU7 201 aa8.52□□□□□ -1.05
CCDC40-209ENST00000573474 SLC25A20O43772 301 aa8.51□□□□□ -1.05
CCDC40-209ENST00000573474 INAFM2P0DMQ5 153 aa8.51□□□□□ -1.05
CCDC40-209ENST00000573474 LINC00528Q8N1L1 170 aa8.51□□□□□ -1.05
CCDC40-209ENST00000573474 hADV29S1A0JD25 119 aa8.5□□□□□ -1.05
CCDC40-209ENST00000573474 Q6ZRX8 168 aa8.5□□□□□ -1.05
CCDC40-209ENST00000573474 DYNC1H1Q14204 4646 aaKnown RBP8.5□□□□□ -1.05
CCDC40-209ENST00000573474 BCE1O60756 84 aa8.49□□□□□ -1.05
CCDC40-209ENST00000573474 FAM19A1Q7Z5A9 133 aa8.49□□□□□ -1.05
CCDC40-209ENST00000573474 LRP1BQ9NZR2 4599 aa8.48□□□□□ -1.05
CCDC40-209ENST00000573474 C9JAW5 83 aa8.48□□□□□ -1.05
CCDC40-209ENST00000573474 DNAL4O96015 105 aa8.48□□□□□ -1.05
CCDC40-209ENST00000573474 DHRS4-AS1Q9P1J3 65 aa8.48□□□□□ -1.05
CCDC40-209ENST00000573474 PKHD1P08F94 4074 aa8.48□□□□□ -1.05
CCDC40-209ENST00000573474 PSORS1C2Q9UIG4 136 aa8.47□□□□□ -1.05
CCDC40-209ENST00000573474 H0Y9J4 135 aa8.46□□□□□ -1.06
CCDC40-209ENST00000573474 HAMPP81172 84 aa8.46□□□□□ -1.06
CCDC40-209ENST00000573474 Q9BRP9 147 aa8.46□□□□□ -1.06
CCDC40-209ENST00000573474 F8W1H4 67 aa8.45□□□□□ -1.06
CCDC40-209ENST00000573474 UBE2AP49459 152 aa8.45□□□□□ -1.06
CCDC40-209ENST00000573474 PRO0461Q9UI25 63 aa8.45□□□□□ -1.06
CCDC40-209ENST00000573474 PRLHP81277 87 aa8.44□□□□□ -1.06
CCDC40-209ENST00000573474 C1orf137Q5JT78 98 aa8.44□□□□□ -1.06
CCDC40-209ENST00000573474 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.44□□□□□ -1.06
CCDC40-209ENST00000573474 MTURNQ8N3F0 131 aa8.44□□□□□ -1.06
CCDC40-209ENST00000573474 BAALC-AS2P0C853 105 aa8.43□□□□□ -1.06
CCDC40-209ENST00000573474 XGP55808 180 aa8.43□□□□□ -1.06
CCDC40-209ENST00000573474 SMCR5Q8TEV8 140 aa8.43□□□□□ -1.06
CCDC40-209ENST00000573474 ORMDL1Q9P0S3 153 aa8.43□□□□□ -1.06
CCDC40-209ENST00000573474 H3BT86 120 aa8.42□□□□□ -1.06
CCDC40-209ENST00000573474 OCIAD2Q56VL3 154 aa8.42□□□□□ -1.06
CCDC40-209ENST00000573474 Q6ZQY7 126 aa8.42□□□□□ -1.06
CCDC40-209ENST00000573474 KRTAP13-1Q8IUC0 172 aa8.42□□□□□ -1.06
CCDC40-209ENST00000573474 H3BQ85 93 aa8.41□□□□□ -1.06
CCDC40-209ENST00000573474 GHRHP01286 108 aa8.41□□□□□ -1.06
CCDC40-209ENST00000573474 SMCPP49901 116 aaPredicted RBP8.41□□□□□ -1.06
CCDC40-209ENST00000573474 ANKRD29Q8N6D5 301 aa8.41□□□□□ -1.06
CCDC40-209ENST00000573474 LINC01600Q96MT4 127 aa8.41□□□□□ -1.06
CCDC40-209ENST00000573474 HIGD2AQ9BW72 106 aa8.41□□□□□ -1.06
CCDC40-209ENST00000573474 ERC2-IT1O76042 136 aa8.4□□□□□ -1.06
CCDC40-209ENST00000573474 TMEM256-PLSCR3K7ERE1 68 aa8.39□□□□□ -1.07
CCDC40-209ENST00000573474 IGLV7-43P04211 117 aa8.39□□□□□ -1.07
CCDC40-209ENST00000573474 ZNF861PO60384 105 aa8.38□□□□□ -1.07
CCDC40-209ENST00000573474 APOBP04114 4563 aaKnown RBP8.37□□□□□ -1.07
CCDC40-209ENST00000573474 ST20-AS1Q8NBB2 130 aa8.36□□□□□ -1.07
CCDC40-209ENST00000573474 DEFB105AQ8NG35 78 aa8.35□□□□□ -1.07
CCDC40-209ENST00000573474 PPDPFLQ8WWR9 84 aa8.35□□□□□ -1.07
CCDC40-209ENST00000573474 IGLV5-48A0A075B6I7 105 aa8.34□□□□□ -1.07
CCDC40-209ENST00000573474 LINC01547P58512 204 aaPredicted RBP8.34□□□□□ -1.07
CCDC40-209ENST00000573474 Q8N377 158 aa8.34□□□□□ -1.07
CCDC40-209ENST00000573474 TEX49A0A1B0GTD5 131 aa8.33□□□□□ -1.08
CCDC40-209ENST00000573474 CDK2AP2O75956 126 aa8.33□□□□□ -1.08
CCDC40-209ENST00000573474 SMR3BP02814 79 aaPredicted RBP8.33□□□□□ -1.08
CCDC40-209ENST00000573474 RPL37AP61513 92 aaKnown RBP8.33□□□□□ -1.08
CCDC40-209ENST00000573474 ETDBQ3ZM63 59 aa8.33□□□□□ -1.08
CCDC40-209ENST00000573474 TEN1Q86WV5 123 aa8.33□□□□□ -1.08
CCDC40-209ENST00000573474 ZNF706Q9Y5V0 76 aaPredicted RBP8.31□□□□□ -1.08
CCDC40-209ENST00000573474 LAMTOR3Q9UHA4 124 aa8.3□□□□□ -1.08
CCDC40-209ENST00000573474 SPRR1BP22528 89 aa8.29□□□□□ -1.08
CCDC40-209ENST00000573474 NDUFV3P56181 108 aaKnown RBP8.29□□□□□ -1.08
CCDC40-209ENST00000573474 GAGE2AQ6NT46 116 aa8.29□□□□□ -1.08
CCDC40-209ENST00000573474 SPRR4Q96PI1 79 aa8.29□□□□□ -1.08
CCDC40-209ENST00000573474 JMJD7-PLA2G4BH0Y9G9 81 aa8.28□□□□□ -1.08
CCDC40-209ENST00000573474 OBSCN-AS1Q96MR7 158 aa8.28□□□□□ -1.08
CCDC40-209ENST00000573474 VPS13BQ7Z7G8 4022 aa8.27□□□□□ -1.09
CCDC40-209ENST00000573474 LINC00483Q53H64 154 aa8.26□□□□□ -1.09
CCDC40-209ENST00000573474 SMIM29Q86T20 159 aa8.26□□□□□ -1.09
CCDC40-209ENST00000573474 SRRM2Q9UQ35 2752 aaKnown RBP8.26□□□□□ -1.09
CCDC40-209ENST00000573474 RBM3P98179 157 aaKnown RBP8.25□□□□□ -1.09
CCDC40-209ENST00000573474 C3orf22Q8N5N4 141 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms