RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NOTCH1P46531 2555 aa14.8□□□□□ -0.04
VPS53-211ENST00000571805 DNAH1Q9P2D7 4330 aa14.8□□□□□ -0.04
VPS53-211ENST00000571805 CASC10Q5T4H9 136 aa14.8□□□□□ -0.04
VPS53-211ENST00000571805 PLA2G2DQ9UNK4 145 aa14.79□□□□□ -0.04
VPS53-211ENST00000571805 BCE1O60756 84 aa14.77□□□□□ -0.04
VPS53-211ENST00000571805 MRAPQ8TCY5 172 aa14.77□□□□□ -0.05
VPS53-211ENST00000571805 TMEM258P61165 79 aa14.75□□□□□ -0.05
VPS53-211ENST00000571805 PRB2P02812 416 aaPredicted RBP14.74□□□□□ -0.05
VPS53-211ENST00000571805 FAM168BA1KXE4 195 aa14.74□□□□□ -0.05
VPS53-211ENST00000571805 Q8N377 158 aa14.74□□□□□ -0.05
VPS53-211ENST00000571805 IGLV5-37A0A075B6J1 123 aa14.73□□□□□ -0.05
VPS53-211ENST00000571805 SVIPQ8NHG7 77 aa14.73□□□□□ -0.05
VPS53-211ENST00000571805 TM2D3Q9BRN9 247 aa14.73□□□□□ -0.05
VPS53-211ENST00000571805 KRTAP4-16G5E9R7 235 aaPredicted RBP14.72□□□□□ -0.05
VPS53-211ENST00000571805 SCXQ7RTU7 201 aa14.72□□□□□ -0.05
VPS53-211ENST00000571805 KRTAP7-1Q8IUC3 87 aa14.71□□□□□ -0.05
VPS53-211ENST00000571805 IGLV1-50A0A075B6I6 118 aa14.71□□□□□ -0.05
VPS53-211ENST00000571805 RPL37AP8A6NKH3 93 aa14.71□□□□□ -0.05
VPS53-211ENST00000571805 TRAV7A0A075B6U4 112 aa14.7□□□□□ -0.06
VPS53-211ENST00000571805 HUWE1Q7Z6Z7 4374 aaKnown RBP14.7□□□□□ -0.06
VPS53-211ENST00000571805 DEFB105AQ8NG35 78 aa14.7□□□□□ -0.06
VPS53-211ENST00000571805 LOC107984640A0A0U1RRK4 108 aa14.69□□□□□ -0.06
VPS53-211ENST00000571805 Q6ZRX8 168 aa14.69□□□□□ -0.06
VPS53-211ENST00000571805 BAHCC1Q9P281 2608 aa14.69□□□□□ -0.06
VPS53-211ENST00000571805 NBEAL1Q6ZS30 2694 aa14.68□□□□□ -0.06
VPS53-211ENST00000571805 J3KT08 172 aa14.68□□□□□ -0.06
VPS53-211ENST00000571805 SPRR1AP35321 89 aa14.68□□□□□ -0.06
VPS53-211ENST00000571805 RPS28P62857 69 aaKnown RBP14.68□□□□□ -0.06
VPS53-211ENST00000571805 PRYO14603 147 aa14.68□□□□□ -0.06
VPS53-211ENST00000571805 Q9BRP9 147 aa14.68□□□□□ -0.06
VPS53-211ENST00000571805 DHRS4-AS1Q9P1J3 65 aa14.68□□□□□ -0.06
VPS53-211ENST00000571805 IGLV5-48A0A075B6I7 105 aa14.67□□□□□ -0.06
VPS53-211ENST00000571805 C20orf197Q8N268 126 aa14.67□□□□□ -0.06
VPS53-211ENST00000571805 RMI2Q96E14 147 aa14.66□□□□□ -0.06
VPS53-211ENST00000571805 DPH3Q96FX2 82 aa14.66□□□□□ -0.06
VPS53-211ENST00000571805 K7EIL1 84 aa14.65□□□□□ -0.07
VPS53-211ENST00000571805 ETDCA0A1B0GVM5 59 aa14.62□□□□□ -0.07
VPS53-211ENST00000571805 COL6A5A8TX70 2615 aa14.61□□□□□ -0.07
VPS53-211ENST00000571805 NREPQ16612 68 aa14.61□□□□□ -0.07
VPS53-211ENST00000571805 MRPL55Q7Z7F7 128 aaKnown RBP14.6□□□□□ -0.07
VPS53-211ENST00000571805 C3orf84H3BNL1 204 aa14.59□□□□□ -0.07
VPS53-211ENST00000571805 FAM19A5Q7Z5A7 132 aaPredicted RBP14.59□□□□□ -0.07
VPS53-211ENST00000571805 ST20-AS1Q8NBB2 130 aa14.59□□□□□ -0.07
VPS53-211ENST00000571805 TNP2Q05952 138 aa14.58□□□□□ -0.08
VPS53-211ENST00000571805 Q8N9L7 120 aa14.57□□□□□ -0.08
VPS53-211ENST00000571805 IGKV4-1P06312 121 aa14.56□□□□□ -0.08
VPS53-211ENST00000571805 KLKP1Q107X0 134 aa14.55□□□□□ -0.08
VPS53-211ENST00000571805 ERC2-IT1O76042 136 aa14.55□□□□□ -0.08
VPS53-211ENST00000571805 A0A1W2PNM2 257 aa14.54□□□□□ -0.08
VPS53-211ENST00000571805 H7BZZ5 65 aa14.53□□□□□ -0.08
VPS53-211ENST00000571805 OXTP01178 125 aa14.52□□□□□ -0.08
VPS53-211ENST00000571805 A0A1B0GW54 56 aa14.52□□□□□ -0.09
VPS53-211ENST00000571805 BPY2O14599 106 aa14.52□□□□□ -0.09
VPS53-211ENST00000571805 C1orf137Q5JT78 98 aa14.51□□□□□ -0.09
VPS53-211ENST00000571805 FUSP35637 526 aaKnown RBP eCLIP14.5□□□□□ -0.09
VPS53-211ENST00000571805 KRTAP1-5Q9BYS1 174 aa14.5□□□□□ -0.09
VPS53-211ENST00000571805 DNAH10Q8IVF4 4471 aa14.49□□□□□ -0.09
VPS53-211ENST00000571805 REG3GQ6UW15 175 aa14.49□□□□□ -0.09
VPS53-211ENST00000571805 SNURFQ9Y675 71 aa14.49□□□□□ -0.09
VPS53-211ENST00000571805 UBE2BP63146 152 aa14.48□□□□□ -0.09
VPS53-211ENST00000571805 LYSTQ99698 3801 aa14.47□□□□□ -0.09
VPS53-211ENST00000571805 Q8NBF4 154 aa14.46□□□□□ -0.09
VPS53-211ENST00000571805 FAM236DA0A1B0GTK5 79 aa14.45□□□□□ -0.1
VPS53-211ENST00000571805 FAM236CP0DP71 79 aa14.45□□□□□ -0.1
VPS53-211ENST00000571805 SPRR4Q96PI1 79 aa14.45□□□□□ -0.1
VPS53-211ENST00000571805 A0A096LNI7 61 aa14.44□□□□□ -0.1
VPS53-211ENST00000571805 SMIM29Q86T20 159 aa14.44□□□□□ -0.1
VPS53-211ENST00000571805 DNAH9Q9NYC9 4486 aa14.43□□□□□ -0.1
VPS53-211ENST00000571805 COL7A1Q02388 2944 aa14.43□□□□□ -0.1
VPS53-211ENST00000571805 CNBPP62633 177 aaKnown RBP14.42□□□□□ -0.1
VPS53-211ENST00000571805 C16orf90A8MZG2 172 aa14.42□□□□□ -0.1
VPS53-211ENST00000571805 A0A1W2PNN7 141 aa14.41□□□□□ -0.1
VPS53-211ENST00000571805 OCR1Q9BZK8 76 aa14.41□□□□□ -0.1
VPS53-211ENST00000571805 MGAM2Q2M2H8 2515 aa14.4□□□□□ -0.1
VPS53-211ENST00000571805 STAB2Q8WWQ8 2551 aa14.4□□□□□ -0.1
VPS53-211ENST00000571805 IGKV2-24A0A0C4DH68 120 aa14.39□□□□□ -0.11
VPS53-211ENST00000571805 F8WEM9 126 aa14.38□□□□□ -0.11
VPS53-211ENST00000571805 TMEM254Q8TBM7 123 aa14.36□□□□□ -0.11
VPS53-211ENST00000571805 PSCAO43653 123 aa14.35□□□□□ -0.11
VPS53-211ENST00000571805 LINC00476Q8WZB0 136 aa14.35□□□□□ -0.11
VPS53-211ENST00000571805 APLNQ9ULZ1 77 aa14.35□□□□□ -0.11
VPS53-211ENST00000571805 NDUFC1O43677 76 aa14.34□□□□□ -0.11
VPS53-211ENST00000571805 EPM2AB3EWF7 344 aa14.34□□□□□ -0.11
VPS53-211ENST00000571805 PRLHP81277 87 aa14.33□□□□□ -0.11
VPS53-211ENST00000571805 DYNC2H1Q8NCM8 4307 aaKnown RBP14.32□□□□□ -0.12
VPS53-211ENST00000571805 DSCR10P59022 87 aa14.32□□□□□ -0.12
VPS53-211ENST00000571805 UBE2DNLQ8IWF7 75 aa14.31□□□□□ -0.12
VPS53-211ENST00000571805 SERP1Q9Y6X1 66 aa14.31□□□□□ -0.12
VPS53-211ENST00000571805 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.3□□□□□ -0.12
VPS53-211ENST00000571805 A0A0G2JQZ4 141 aa14.3□□□□□ -0.12
VPS53-211ENST00000571805 IGFL1Q6UW32 110 aa14.29□□□□□ -0.12
VPS53-211ENST00000571805 A0A0U1RQV1 116 aa14.28□□□□□ -0.12
VPS53-211ENST00000571805 Q5XG85 94 aa14.27□□□□□ -0.13
VPS53-211ENST00000571805 KRTAP11-1Q8IUC1 163 aa14.27□□□□□ -0.13
VPS53-211ENST00000571805 IGLV8-61A0A075B6I0 122 aa14.26□□□□□ -0.13
VPS53-211ENST00000571805 DNAH7Q8WXX0 4024 aa14.26□□□□□ -0.13
VPS53-211ENST00000571805 HIGD2AQ9BW72 106 aa14.26□□□□□ -0.13
VPS53-211ENST00000571805 CHTF8P0CG12 524 aa14.25□□□□□ -0.13
VPS53-211ENST00000571805 C14orf177Q52M58 125 aa14.25□□□□□ -0.13
VPS53-211ENST00000571805 K7EQZ3 153 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms