RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SYS1-DBNDD2H3BUS1 97 aa9.52□□□□□ -0.89
CLK3-227ENST00000570296 NEBP20929 6669 aa9.52□□□□□ -0.89
CLK3-227ENST00000570296 KRTDAPP60985 99 aa9.52□□□□□ -0.89
CLK3-227ENST00000570296 SNRPEP62304 92 aaKnown RBP9.52□□□□□ -0.89
CLK3-227ENST00000570296 KRTAP6-3Q3LI67 103 aa9.52□□□□□ -0.89
CLK3-227ENST00000570296 HIST3H2BBQ8N257 126 aa9.52□□□□□ -0.89
CLK3-227ENST00000570296 C20orf202A1L168 122 aa9.51□□□□□ -0.89
CLK3-227ENST00000570296 LCE2BO14633 110 aa9.51□□□□□ -0.89
CLK3-227ENST00000570296 DPM2O94777 84 aa9.51□□□□□ -0.89
CLK3-227ENST00000570296 IGLV6-57P01721 117 aa9.51□□□□□ -0.89
CLK3-227ENST00000570296 SPINK8P0C7L1 97 aa9.51□□□□□ -0.89
CLK3-227ENST00000570296 PET117Q6UWS5 81 aa9.51□□□□□ -0.89
CLK3-227ENST00000570296 PRYO14603 147 aa9.5□□□□□ -0.89
CLK3-227ENST00000570296 IGKCP01834 107 aa9.5□□□□□ -0.89
CLK3-227ENST00000570296 LINC00846Q9NV44 126 aa9.5□□□□□ -0.89
CLK3-227ENST00000570296 C3orf79P0CE67 100 aa9.49□□□□□ -0.89
CLK3-227ENST00000570296 RPL37P61927 97 aaKnown RBP9.49□□□□□ -0.89
CLK3-227ENST00000570296 SPRR1AP35321 89 aa9.48□□□□□ -0.89
CLK3-227ENST00000570296 HERVK_113P61574 105 aa9.48□□□□□ -0.89
CLK3-227ENST00000570296 COX17Q14061 63 aa9.48□□□□□ -0.89
CLK3-227ENST00000570296 HIST1H2BLQ99880 126 aa9.48□□□□□ -0.89
CLK3-227ENST00000570296 PMCHL2Q9BQD1 86 aa9.48□□□□□ -0.89
CLK3-227ENST00000570296 ERG28Q9UKR5 140 aa9.48□□□□□ -0.89
CLK3-227ENST00000570296 C5orf52A6NGY3 159 aa9.47□□□□□ -0.89
CLK3-227ENST00000570296 AKR1D1P51857 326 aa9.47□□□□□ -0.89
CLK3-227ENST00000570296 LIMD2Q9BT23 127 aa9.47□□□□□ -0.89
CLK3-227ENST00000570296 ETDCA0A1B0GVM5 59 aa9.46□□□□□ -0.9
CLK3-227ENST00000570296 TMEM223A0PJW6 202 aa9.46□□□□□ -0.9
CLK3-227ENST00000570296 LINC01545Q5VT33 79 aa9.46□□□□□ -0.9
CLK3-227ENST00000570296 Q6Q795 121 aa9.46□□□□□ -0.9
CLK3-227ENST00000570296 TMA7Q9Y2S6 64 aaKnown RBP9.46□□□□□ -0.9
CLK3-227ENST00000570296 IGLV5-39A0A0G2JS06 123 aa9.45□□□□□ -0.9
CLK3-227ENST00000570296 C9orf153Q5TBE3 101 aa9.44□□□□□ -0.9
CLK3-227ENST00000570296 SFTA2Q6UW10 78 aa9.44□□□□□ -0.9
CLK3-227ENST00000570296 KCNQ1DNQ9H478 68 aa9.44□□□□□ -0.9
CLK3-227ENST00000570296 ERC2-IT1O76042 136 aa9.41□□□□□ -0.9
CLK3-227ENST00000570296 LEPROTO15243 131 aa9.4□□□□□ -0.9
CLK3-227ENST00000570296 MT2AP02795 61 aa9.39□□□□□ -0.91
CLK3-227ENST00000570296 LGALS3P17931 250 aaKnown RBP9.39□□□□□ -0.91
CLK3-227ENST00000570296 SCGB1D1O95968 90 aa9.38□□□□□ -0.91
CLK3-227ENST00000570296 MYMXA0A1B0GTQ4 84 aa9.37□□□□□ -0.91
CLK3-227ENST00000570296 E9PLD3 99 aa9.37□□□□□ -0.91
CLK3-227ENST00000570296 J3QQQ9 107 aa9.37□□□□□ -0.91
CLK3-227ENST00000570296 B5MCH6 92 aa9.36□□□□□ -0.91
CLK3-227ENST00000570296 HSBP1L1C9JCN9 74 aa9.36□□□□□ -0.91
CLK3-227ENST00000570296 HERV-K104P63124 156 aa9.36□□□□□ -0.91
CLK3-227ENST00000570296 KRTAP19-6Q3LI70 58 aa9.36□□□□□ -0.91
CLK3-227ENST00000570296 ATOH7Q8N100 152 aa9.36□□□□□ -0.91
CLK3-227ENST00000570296 KRTAP9-3Q9BYQ3 159 aa9.36□□□□□ -0.91
CLK3-227ENST00000570296 LINC00587B1AMM8 73 aa9.35□□□□□ -0.91
CLK3-227ENST00000570296 NMUP48645 174 aa9.35□□□□□ -0.91
CLK3-227ENST00000570296 ZNF625Q96I27 306 aaPredicted RBP9.35□□□□□ -0.91
CLK3-227ENST00000570296 MEIG1Q5JSS6 88 aa9.34□□□□□ -0.91
CLK3-227ENST00000570296 LINC00158P58513 81 aa9.32□□□□□ -0.92
CLK3-227ENST00000570296 Q9BRP9 147 aa9.32□□□□□ -0.92
CLK3-227ENST00000570296 MT1FP04733 61 aa9.31□□□□□ -0.92
CLK3-227ENST00000570296 TSPEAR-AS2P59090 65 aa9.31□□□□□ -0.92
CLK3-227ENST00000570296 S100A12P80511 92 aa9.31□□□□□ -0.92
CLK3-227ENST00000570296 TRBV10-3A0A0K0K1G6 114 aa9.3□□□□□ -0.92
CLK3-227ENST00000570296 NCR3O14931 201 aa9.3□□□□□ -0.92
CLK3-227ENST00000570296 HRCT1Q6UXD1 115 aa9.3□□□□□ -0.92
CLK3-227ENST00000570296 A0A0U1RRA0 63 aa9.28□□□□□ -0.92
CLK3-227ENST00000570296 ZNF815PA8K554 130 aa9.28□□□□□ -0.92
CLK3-227ENST00000570296 JOSD1Q15040 202 aaPredicted RBP9.28□□□□□ -0.92
CLK3-227ENST00000570296 ANKRD39Q53RE8 183 aa9.28□□□□□ -0.92
CLK3-227ENST00000570296 Q6ZRX8 168 aa9.28□□□□□ -0.92
CLK3-227ENST00000570296 SMIM13P0DJ93 91 aa9.27□□□□□ -0.93
CLK3-227ENST00000570296 BOD1L2Q8IYS8 172 aa9.27□□□□□ -0.93
CLK3-227ENST00000570296 MUC12Q9UKN1 5478 aa9.27□□□□□ -0.93
CLK3-227ENST00000570296 KRTAP20-1Q3LI63 56 aa9.25□□□□□ -0.93
CLK3-227ENST00000570296 SCGB1D4Q6XE38 83 aa9.25□□□□□ -0.93
CLK3-227ENST00000570296 A0A0J9YXY3 114 aa9.24□□□□□ -0.93
CLK3-227ENST00000570296 KRTAP10-10P60014 251 aa9.23□□□□□ -0.93
CLK3-227ENST00000570296 MIR7-3HGQ8N6C7 128 aa9.23□□□□□ -0.93
CLK3-227ENST00000570296 VAMP8Q9BV40 100 aa9.23□□□□□ -0.93
CLK3-227ENST00000570296 TTTY13Q9BZ97 58 aa9.23□□□□□ -0.93
CLK3-227ENST00000570296 MIEN1Q9BRT3 115 aa9.22□□□□□ -0.93
CLK3-227ENST00000570296 TIMM17BO60830 172 aa9.21□□□□□ -0.94
CLK3-227ENST00000570296 CD164Q04900 197 aa9.21□□□□□ -0.94
CLK3-227ENST00000570296 C1orf195Q5TG92 126 aa9.21□□□□□ -0.94
CLK3-227ENST00000570296 Q5XG85 94 aa9.21□□□□□ -0.94
CLK3-227ENST00000570296 PCP2Q8IVA1 136 aa9.21□□□□□ -0.94
CLK3-227ENST00000570296 PAM16Q9Y3D7 125 aa9.2□□□□□ -0.94
CLK3-227ENST00000570296 SPATA45Q537H7 98 aa9.19□□□□□ -0.94
CLK3-227ENST00000570296 PYY3Q5JQD4 70 aa9.19□□□□□ -0.94
CLK3-227ENST00000570296 ST20-AS1Q8NBB2 130 aa9.19□□□□□ -0.94
CLK3-227ENST00000570296 SLC25A34Q6PIV7 304 aa9.18□□□□□ -0.94
CLK3-227ENST00000570296 ATP11AUNQ6ZP68 121 aa9.17□□□□□ -0.94
CLK3-227ENST00000570296 COPS9Q8WXC6 57 aa9.17□□□□□ -0.94
CLK3-227ENST00000570296 COX8AP10176 69 aa9.16□□□□□ -0.94
CLK3-227ENST00000570296 DDTP30046 118 aa9.16□□□□□ -0.94
CLK3-227ENST00000570296 SPRR1BP22528 89 aa9.15□□□□□ -0.94
CLK3-227ENST00000570296 NPC2P61916 151 aa9.15□□□□□ -0.94
CLK3-227ENST00000570296 ADAMTSL4-AS1Q5T5F5 129 aa9.15□□□□□ -0.94
CLK3-227ENST00000570296 LOC107984156A0A0G2JMH3 177 aa9.14□□□□□ -0.95
CLK3-227ENST00000570296 Q6ZVH6 145 aa9.14□□□□□ -0.95
CLK3-227ENST00000570296 ARL17AQ8IVW1 177 aa9.14□□□□□ -0.95
CLK3-227ENST00000570296 LITAFQ99732 161 aa9.14□□□□□ -0.95
CLK3-227ENST00000570296 DLEU1O43261 78 aa9.13□□□□□ -0.95
CLK3-227ENST00000570296 C14orf144Q96I85 54 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms