RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 Q0VG73 95 aa3.09□□□□□ -1.91
VPS35P1-201ENST00000563400 ATP6V0E2Q8NHE4 81 aa3.09□□□□□ -1.91
VPS35P1-201ENST00000563400 VAMP8Q9BV40 100 aa3.09□□□□□ -1.91
VPS35P1-201ENST00000563400 KLK12Q9UKR0 248 aa3.09□□□□□ -1.91
VPS35P1-201ENST00000563400 TRBV25-1A0A075B6N4 114 aa3.09□□□□□ -1.92
VPS35P1-201ENST00000563400 DEFB4AO15263 64 aa3.09□□□□□ -1.92
VPS35P1-201ENST00000563400 APOC3P02656 99 aa3.09□□□□□ -1.92
VPS35P1-201ENST00000563400 FCER1GP30273 86 aa3.09□□□□□ -1.92
VPS35P1-201ENST00000563400 DSCR10P59022 87 aa3.09□□□□□ -1.92
VPS35P1-201ENST00000563400 CNFNQ9BYD5 112 aa3.09□□□□□ -1.92
VPS35P1-201ENST00000563400 ST20Q9HBF5 79 aa3.09□□□□□ -1.92
VPS35P1-201ENST00000563400 TENM1Q9UKZ4 2725 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 SMIM27A0A1W2PRY6 76 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 LY6G6CO95867 125 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 MGPP08493 103 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 DEFB1P60022 68 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 CFAP126Q5VTH2 177 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 Q6ZTI0 123 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 LINC00269Q8N2A0 174 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 C20orf78Q9BR46 151 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 SMCO4Q9NRQ5 59 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 R4GN34 69 aa3.08□□□□□ -1.92
VPS35P1-201ENST00000563400 IGHV3-64A0A075B6Q5 118 aa3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 I3L3M4 83 aa3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 RNASE3P12724 160 aaKnown RBP3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 CRIP1P50238 77 aa3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 SEC11AP67812 179 aa3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 ASB16-AS1Q495Z4 193 aa3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 LELP1Q5T871 98 aa3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 C14orf132Q9NPU4 83 aa3.07□□□□□ -1.92
VPS35P1-201ENST00000563400 IGLV2-18A0A075B6J9 118 aa3.06□□□□□ -1.92
VPS35P1-201ENST00000563400 PSCAO43653 123 aa3.06□□□□□ -1.92
VPS35P1-201ENST00000563400 PRB4P10163 310 aaPredicted RBP3.06□□□□□ -1.92
VPS35P1-201ENST00000563400 NXT2Q9NPJ8 142 aaKnown RBP3.06□□□□□ -1.92
VPS35P1-201ENST00000563400 NOTCH1P46531 2555 aa3.06□□□□□ -1.92
VPS35P1-201ENST00000563400 A0A0J9YY99 117 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 C7orf77A4D0Y5 90 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 SNCGO76070 127 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 GAS8-AS1O95177 125 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 S100A7L2Q5SY68 101 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 PRR9Q5T870 116 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 Q8N8P6 123 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 OR10AG1Q8NH19 301 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 V9GYV3 84 aa3.05□□□□□ -1.92
VPS35P1-201ENST00000563400 TRBV6-8A0A0A6YYG3 113 aa3.04□□□□□ -1.92
VPS35P1-201ENST00000563400 TRBV6-5A0A0K0K1A5 114 aa3.04□□□□□ -1.92
VPS35P1-201ENST00000563400 P0C880 135 aa3.04□□□□□ -1.92
VPS35P1-201ENST00000563400 IFI27P40305 119 aaPredicted RBP3.04□□□□□ -1.92
VPS35P1-201ENST00000563400 LYPD5Q6UWN5 251 aa3.04□□□□□ -1.92
VPS35P1-201ENST00000563400 APLNQ9ULZ1 77 aa3.04□□□□□ -1.92
VPS35P1-201ENST00000563400 A0A096LPF7 62 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 LCE6AA0A183 80 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 SDHAF1A6NFY7 115 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 M0QY20 66 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 LCE1EQ5T753 118 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 SPINT4Q6UDR6 99 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 IBA57-AS1B1ANH7 110 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 UBE2D3P61077 147 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 UBE2D2P62837 147 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 RBM3P98179 157 aaKnown RBP3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 IQCJQ1A5X6 159 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 LINC01556Q5JQF7 62 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 CASC2Q6XLA1 102 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 HIGD2AQ9BW72 106 aa3.03□□□□□ -1.92
VPS35P1-201ENST00000563400 TRRAPQ9Y4A5 3859 aa3.03□□□□□ -1.93
VPS35P1-201ENST00000563400 VWFP04275 2813 aa3.02□□□□□ -1.93
VPS35P1-201ENST00000563400 PKD1L1Q8TDX9 2849 aa3.02□□□□□ -1.93
VPS35P1-201ENST00000563400 ANGP03950 147 aaKnown RBP3.02□□□□□ -1.93
VPS35P1-201ENST00000563400 ADCYAP1P18509 176 aa3.02□□□□□ -1.93
VPS35P1-201ENST00000563400 SFTA2Q6UW10 78 aa3.02□□□□□ -1.93
VPS35P1-201ENST00000563400 C9orf163Q8N9P6 203 aa3.02□□□□□ -1.93
VPS35P1-201ENST00000563400 NBDYA0A0U1RRE5 68 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 D6R8Y8 96 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 BAALC-AS2P0C853 105 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 COX7CP15954 63 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 HINT1P49773 126 aaPredicted RBP3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 BAGE3Q86Y29 109 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 TMEM141Q96I45 108 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 TIMM21Q9BVV7 248 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 NDUFA12Q9UI09 145 aa3.01□□□□□ -1.93
VPS35P1-201ENST00000563400 IGLV10-54A0A075B6I4 117 aa3□□□□□ -1.93
VPS35P1-201ENST00000563400 MUC21A0A140T8X8 626 aa3□□□□□ -1.93
VPS35P1-201ENST00000563400 TMEM254Q8TBM7 123 aa3□□□□□ -1.93
VPS35P1-201ENST00000563400 SMIM2Q9BVW6 85 aa3□□□□□ -1.93
VPS35P1-201ENST00000563400 ANK2Q01484 3957 aa3□□□□□ -1.93
VPS35P1-201ENST00000563400 TGP01266 2768 aa3□□□□□ -1.93
VPS35P1-201ENST00000563400 A0A1W2PNM2 257 aa2.99□□□□□ -1.93
VPS35P1-201ENST00000563400 H3BRM9 83 aa2.99□□□□□ -1.93
VPS35P1-201ENST00000563400 HRES1P13985 223 aa2.99□□□□□ -1.93
VPS35P1-201ENST00000563400 POLR2KP53803 58 aaKnown RBP2.99□□□□□ -1.93
VPS35P1-201ENST00000563400 MIR22HGQ0VDD5 57 aa2.99□□□□□ -1.93
VPS35P1-201ENST00000563400 MEGF8Q7Z7M0 2845 aa2.99□□□□□ -1.93
VPS35P1-201ENST00000563400 IGKV2D-24A0A075B6R9 120 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 A0A087WSZ3 146 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 C5orf38Q86SI9 138 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 LINC00474Q9P2X8 69 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 ERC2-IT1O76042 136 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 IGHV3-30P01768 117 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 IGHV3-33P01772 117 aa2.98□□□□□ -1.93
VPS35P1-201ENST00000563400 IGHV3-30-5P0DP03 117 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms