RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 M0QXV9 152 aa5.8□□□□□ -1.48
LDLR-211ENST00000560173 TSPAN13O95857 204 aa5.8□□□□□ -1.48
LDLR-211ENST00000560173 PSMB2P49721 201 aa5.8□□□□□ -1.48
LDLR-211ENST00000560173 Q1RN00 199 aa5.8□□□□□ -1.48
LDLR-211ENST00000560173 MIR7-3HGQ8N6C7 128 aa5.8□□□□□ -1.48
LDLR-211ENST00000560173 LOC107984156A0A0G2JMH3 177 aa5.79□□□□□ -1.48
LDLR-211ENST00000560173 SCGB1C2P0DMR2 95 aa5.79□□□□□ -1.48
LDLR-211ENST00000560173 SERTAD4-AS1Q5TG53 156 aa5.79□□□□□ -1.48
LDLR-211ENST00000560173 KRTAP11-1Q8IUC1 163 aa5.79□□□□□ -1.48
LDLR-211ENST00000560173 ARL17AQ8IVW1 177 aa5.79□□□□□ -1.48
LDLR-211ENST00000560173 PSORS1C2Q9UIG4 136 aa5.79□□□□□ -1.48
LDLR-211ENST00000560173 A0A0U1RRA0 63 aa5.78□□□□□ -1.48
LDLR-211ENST00000560173 KRTAP29-1A8MX34 341 aaPredicted RBP5.78□□□□□ -1.48
LDLR-211ENST00000560173 NDUFC2O95298 119 aa5.78□□□□□ -1.48
LDLR-211ENST00000560173 PFN2P35080 140 aa5.78□□□□□ -1.48
LDLR-211ENST00000560173 DAND5Q8N907 189 aa5.78□□□□□ -1.48
LDLR-211ENST00000560173 SND1-IT1Q9HBX3 110 aa5.78□□□□□ -1.48
LDLR-211ENST00000560173 F8W1H4 67 aa5.77□□□□□ -1.49
LDLR-211ENST00000560173 RPL13AP40429 203 aaKnown RBP5.77□□□□□ -1.49
LDLR-211ENST00000560173 NPC2P61916 151 aa5.77□□□□□ -1.49
LDLR-211ENST00000560173 OXTP01178 125 aa5.76□□□□□ -1.49
LDLR-211ENST00000560173 NAA38Q9BRA0 125 aaKnown RBP5.76□□□□□ -1.49
LDLR-211ENST00000560173 PLA2G2DQ9UNK4 145 aa5.76□□□□□ -1.49
LDLR-211ENST00000560173 C22orf24Q9Y442 160 aa5.76□□□□□ -1.49
LDLR-211ENST00000560173 IGLV5-37A0A075B6J1 123 aa5.75□□□□□ -1.49
LDLR-211ENST00000560173 H7C2G1 150 aa5.75□□□□□ -1.49
LDLR-211ENST00000560173 UBE2BP63146 152 aa5.75□□□□□ -1.49
LDLR-211ENST00000560173 ATXN8Q156A1 80 aa5.75□□□□□ -1.49
LDLR-211ENST00000560173 C1orf137Q5JT78 98 aa5.75□□□□□ -1.49
LDLR-211ENST00000560173 SOSTDC1Q6X4U4 206 aa5.75□□□□□ -1.49
LDLR-211ENST00000560173 CBY1Q9Y3M2 126 aa5.75□□□□□ -1.49
LDLR-211ENST00000560173 SPINK6Q6UWN8 80 aa5.74□□□□□ -1.49
LDLR-211ENST00000560173 IGLV7-43P04211 117 aa5.73□□□□□ -1.49
LDLR-211ENST00000560173 MRPL55Q7Z7F7 128 aaKnown RBP5.73□□□□□ -1.49
LDLR-211ENST00000560173 TNXBP22105 4242 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 TRBV10-2A0A0K0K1G8 114 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 H0YGX0 51 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 H3BMG7 143 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 TRIAP1O43715 76 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 EIF4EBP3O60516 100 aaPredicted RBP5.72□□□□□ -1.49
LDLR-211ENST00000560173 SNCGO76070 127 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 VPREB1P12018 145 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 RPL28P46779 137 aaKnown RBP5.72□□□□□ -1.49
LDLR-211ENST00000560173 NKAPP1Q8N9T2 125 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 Q8NDZ9 215 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 LINC00167Q96N53 147 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 TMEM126AQ9H061 195 aa5.72□□□□□ -1.49
LDLR-211ENST00000560173 TCL1BO95988 128 aa5.71□□□□□ -1.5
LDLR-211ENST00000560173 MT1HL1P0DM35 61 aa5.71□□□□□ -1.5
LDLR-211ENST00000560173 OR13C6PQ8NH95 151 aa5.71□□□□□ -1.5
LDLR-211ENST00000560173 IGKV2-28A0A075B6P5 120 aa5.7□□□□□ -1.5
LDLR-211ENST00000560173 RPL37AP8A6NKH3 93 aa5.7□□□□□ -1.5
LDLR-211ENST00000560173 IGKV2D-28P01615 120 aa5.7□□□□□ -1.5
LDLR-211ENST00000560173 J3QR89 54 aa5.69□□□□□ -1.5
LDLR-211ENST00000560173 K7ERU9 68 aa5.69□□□□□ -1.5
LDLR-211ENST00000560173 LST1O00453 97 aa5.69□□□□□ -1.5
LDLR-211ENST00000560173 S100A7L2Q5SY68 101 aa5.69□□□□□ -1.5
LDLR-211ENST00000560173 REG3GQ6UW15 175 aa5.69□□□□□ -1.5
LDLR-211ENST00000560173 LINC00337Q8N6G1 96 aa5.69□□□□□ -1.5
LDLR-211ENST00000560173 DIRC1Q969H9 104 aa5.69□□□□□ -1.5
LDLR-211ENST00000560173 A0A1B0GX51 115 aa5.68□□□□□ -1.5
LDLR-211ENST00000560173 H0Y9J4 135 aa5.68□□□□□ -1.5
LDLR-211ENST00000560173 H3BT86 120 aa5.68□□□□□ -1.5
LDLR-211ENST00000560173 BCE1O60756 84 aa5.68□□□□□ -1.5
LDLR-211ENST00000560173 TRACP01848 142 aa5.68□□□□□ -1.5
LDLR-211ENST00000560173 LINC01600Q96MT4 127 aa5.68□□□□□ -1.5
LDLR-211ENST00000560173 RNF213Q63HN8 5207 aa5.67□□□□□ -1.5
LDLR-211ENST00000560173 IGLV1-50A0A075B6I6 118 aa5.67□□□□□ -1.5
LDLR-211ENST00000560173 ZNF861PO60384 105 aa5.67□□□□□ -1.5
LDLR-211ENST00000560173 PCP4P48539 62 aa5.67□□□□□ -1.5
LDLR-211ENST00000560173 SMIM11BQ8TCY0 68 aa5.67□□□□□ -1.5
LDLR-211ENST00000560173 C9JAW5 83 aa5.66□□□□□ -1.5
LDLR-211ENST00000560173 SLC25A20O43772 301 aa5.66□□□□□ -1.5
LDLR-211ENST00000560173 DNAL4O96015 105 aa5.66□□□□□ -1.5
LDLR-211ENST00000560173 PRO0461Q9UI25 63 aa5.66□□□□□ -1.5
LDLR-211ENST00000560173 M0R378 163 aa5.65□□□□□ -1.5
LDLR-211ENST00000560173 GHRHP01286 108 aa5.65□□□□□ -1.5
LDLR-211ENST00000560173 KRTAP13-1Q8IUC0 172 aa5.65□□□□□ -1.5
LDLR-211ENST00000560173 ANKRD29Q8N6D5 301 aa5.65□□□□□ -1.5
LDLR-211ENST00000560173 TRBV7-6A0A0J9YX20 115 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 H3BQ85 93 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 NCR3O14931 201 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 IGLV6-57P01721 117 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 KRTAP1-4P0C5Y4 121 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 KRTAP10-8P60410 259 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 OCIAD2Q56VL3 154 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 TEN1Q86WV5 123 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 CLEC2BQ92478 149 aa5.64□□□□□ -1.51
LDLR-211ENST00000560173 PPDPFLQ8WWR9 84 aa5.63□□□□□ -1.51
LDLR-211ENST00000560173 UBE2AP49459 152 aa5.62□□□□□ -1.51
LDLR-211ENST00000560173 ETDBQ3ZM63 59 aa5.62□□□□□ -1.51
LDLR-211ENST00000560173 C4orf48Q5BLP8 95 aa5.62□□□□□ -1.51
LDLR-211ENST00000560173 TRAV23DV6A0A075B6W5 121 aa5.61□□□□□ -1.51
LDLR-211ENST00000560173 TRBV10-3A0A0K0K1G6 114 aa5.61□□□□□ -1.51
LDLR-211ENST00000560173 PRYO14603 147 aa5.61□□□□□ -1.51
LDLR-211ENST00000560173 PRLHP81277 87 aa5.61□□□□□ -1.51
LDLR-211ENST00000560173 KCNQ1DNQ9H478 68 aa5.61□□□□□ -1.51
LDLR-211ENST00000560173 SMCPP49901 116 aaPredicted RBP5.6□□□□□ -1.51
LDLR-211ENST00000560173 FAM19A1Q7Z5A9 133 aa5.6□□□□□ -1.51
LDLR-211ENST00000560173 PRR26Q8N8Z3 221 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms