RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 FXYD2P54710 66 aa7.79□□□□□ -1.16
SHMT2-227ENST00000557269 HSD52Q0P140 79 aa7.79□□□□□ -1.16
SHMT2-227ENST00000557269 FAM19A1Q7Z5A9 133 aa7.79□□□□□ -1.16
SHMT2-227ENST00000557269 PKHD1L1Q86WI1 4243 aa7.79□□□□□ -1.16
SHMT2-227ENST00000557269 ZNF861PO60384 105 aa7.78□□□□□ -1.16
SHMT2-227ENST00000557269 CFC1BP0CG36 223 aa7.78□□□□□ -1.16
SHMT2-227ENST00000557269 CFC1P0CG37 223 aa7.78□□□□□ -1.16
SHMT2-227ENST00000557269 TRAV13-2A0A0B4J235 113 aa7.77□□□□□ -1.17
SHMT2-227ENST00000557269 ZNF73O43830 326 aaPredicted RBP7.77□□□□□ -1.17
SHMT2-227ENST00000557269 UBE2AP49459 152 aa7.77□□□□□ -1.17
SHMT2-227ENST00000557269 SPINK6Q6UWN8 80 aa7.77□□□□□ -1.17
SHMT2-227ENST00000557269 B5MCH6 92 aa7.76□□□□□ -1.17
SHMT2-227ENST00000557269 RPL28P46779 137 aaKnown RBP7.75□□□□□ -1.17
SHMT2-227ENST00000557269 CTAG1AP78358 180 aa7.75□□□□□ -1.17
SHMT2-227ENST00000557269 SMIM11BQ8TCY0 68 aa7.75□□□□□ -1.17
SHMT2-227ENST00000557269 ETDCA0A1B0GVM5 59 aa7.74□□□□□ -1.17
SHMT2-227ENST00000557269 PCP4L1A6NKN8 68 aa7.74□□□□□ -1.17
SHMT2-227ENST00000557269 H0Y9J4 135 aa7.74□□□□□ -1.17
SHMT2-227ENST00000557269 RPL13AP40429 203 aaKnown RBP7.74□□□□□ -1.17
SHMT2-227ENST00000557269 C6orf99Q4VX62 202 aa7.74□□□□□ -1.17
SHMT2-227ENST00000557269 A0A0B4J2C4 111 aa7.73□□□□□ -1.17
SHMT2-227ENST00000557269 BVES-AS1Q5T3Y7 98 aa7.73□□□□□ -1.17
SHMT2-227ENST00000557269 DIRC1Q969H9 104 aa7.73□□□□□ -1.17
SHMT2-227ENST00000557269 Q9BRP9 147 aa7.73□□□□□ -1.17
SHMT2-227ENST00000557269 PCLOQ9Y6V0 5065 aa7.72□□□□□ -1.17
SHMT2-227ENST00000557269 K7ERJ3 54 aa7.72□□□□□ -1.17
SHMT2-227ENST00000557269 Q6ZRX8 168 aa7.72□□□□□ -1.17
SHMT2-227ENST00000557269 SMCR5Q8TEV8 140 aa7.72□□□□□ -1.17
SHMT2-227ENST00000557269 RAB37Q96AX2 223 aa7.72□□□□□ -1.17
SHMT2-227ENST00000557269 HIGD2AQ9BW72 106 aa7.72□□□□□ -1.17
SHMT2-227ENST00000557269 TMEM238LA0A1B0GVL6 79 aa7.71□□□□□ -1.18
SHMT2-227ENST00000557269 A6NJY4 79 aa7.71□□□□□ -1.18
SHMT2-227ENST00000557269 H7C2G1 150 aa7.71□□□□□ -1.18
SHMT2-227ENST00000557269 ERC2-IT1O76042 136 aa7.71□□□□□ -1.18
SHMT2-227ENST00000557269 HINT1P49773 126 aaPredicted RBP7.71□□□□□ -1.18
SHMT2-227ENST00000557269 NHP2Q9NX24 153 aaKnown RBP7.71□□□□□ -1.18
SHMT2-227ENST00000557269 CBY1Q9Y3M2 126 aa7.71□□□□□ -1.18
SHMT2-227ENST00000557269 FLG2Q5D862 2391 aaPredicted RBP7.71□□□□□ -1.18
SHMT2-227ENST00000557269 A0A1B0GWB2 263 aa7.69□□□□□ -1.18
SHMT2-227ENST00000557269 KRTAP1-4P0C5Y4 121 aa7.69□□□□□ -1.18
SHMT2-227ENST00000557269 COX7BP24311 80 aa7.69□□□□□ -1.18
SHMT2-227ENST00000557269 ELOF1P60002 83 aaKnown RBP7.69□□□□□ -1.18
SHMT2-227ENST00000557269 PRO1854Q9UHT4 67 aa7.69□□□□□ -1.18
SHMT2-227ENST00000557269 TRBV7-6A0A0J9YX20 115 aa7.68□□□□□ -1.18
SHMT2-227ENST00000557269 ANAPC11Q9NYG5 84 aa7.68□□□□□ -1.18
SHMT2-227ENST00000557269 LRP1Q07954 4544 aaKnown RBP7.67□□□□□ -1.18
SHMT2-227ENST00000557269 MYCBP2O75592 4640 aa7.66□□□□□ -1.18
SHMT2-227ENST00000557269 M0R143 59 aa7.65□□□□□ -1.18
SHMT2-227ENST00000557269 FAT3Q8TDW7 4589 aa7.64□□□□□ -1.19
SHMT2-227ENST00000557269 KRTAP29-1A8MX34 341 aaPredicted RBP7.64□□□□□ -1.19
SHMT2-227ENST00000557269 BATFQ16520 125 aa7.64□□□□□ -1.19
SHMT2-227ENST00000557269 Q1RN00 199 aa7.64□□□□□ -1.19
SHMT2-227ENST00000557269 ST20-AS1Q8NBB2 130 aa7.64□□□□□ -1.19
SHMT2-227ENST00000557269 LINC01600Q96MT4 127 aa7.64□□□□□ -1.19
SHMT2-227ENST00000557269 SPRR4Q96PI1 79 aa7.64□□□□□ -1.19
SHMT2-227ENST00000557269 TSPAN13O95857 204 aa7.63□□□□□ -1.19
SHMT2-227ENST00000557269 MT1HL1P0DM35 61 aa7.63□□□□□ -1.19
SHMT2-227ENST00000557269 PRR26Q8N8Z3 221 aa7.63□□□□□ -1.19
SHMT2-227ENST00000557269 DHRS4-AS1Q9P1J3 65 aa7.63□□□□□ -1.19
SHMT2-227ENST00000557269 TRIAP1O43715 76 aa7.62□□□□□ -1.19
SHMT2-227ENST00000557269 OXTP01178 125 aa7.62□□□□□ -1.19
SHMT2-227ENST00000557269 VAMP3Q15836 100 aa7.62□□□□□ -1.19
SHMT2-227ENST00000557269 LINC00575Q6W349 94 aa7.62□□□□□ -1.19
SHMT2-227ENST00000557269 A0A087X002 238 aa7.61□□□□□ -1.19
SHMT2-227ENST00000557269 KRTAP10-8P60410 259 aa7.6□□□□□ -1.19
SHMT2-227ENST00000557269 GAGE2AQ6NT46 116 aa7.6□□□□□ -1.19
SHMT2-227ENST00000557269 FAM218AQ96MZ4 157 aa7.6□□□□□ -1.19
SHMT2-227ENST00000557269 LINC00483Q53H64 154 aa7.59□□□□□ -1.19
SHMT2-227ENST00000557269 ZNF706Q9Y5V0 76 aaPredicted RBP7.59□□□□□ -1.19
SHMT2-227ENST00000557269 PSMB2P49721 201 aa7.58□□□□□ -1.2
SHMT2-227ENST00000557269 KRTAP13-2Q52LG2 175 aa7.58□□□□□ -1.2
SHMT2-227ENST00000557269 hADV29S1A0JD25 119 aa7.57□□□□□ -1.2
SHMT2-227ENST00000557269 LINC01547P58512 204 aaPredicted RBP7.57□□□□□ -1.2
SHMT2-227ENST00000557269 FAM229BQ4G0N7 80 aa7.57□□□□□ -1.2
SHMT2-227ENST00000557269 DEFB105AQ8NG35 78 aa7.57□□□□□ -1.2
SHMT2-227ENST00000557269 NAA38Q9BRA0 125 aaKnown RBP7.57□□□□□ -1.2
SHMT2-227ENST00000557269 SNHG12Q9BXW3 62 aa7.57□□□□□ -1.2
SHMT2-227ENST00000557269 H0YGX0 51 aa7.56□□□□□ -1.2
SHMT2-227ENST00000557269 SLC25A20O43772 301 aa7.56□□□□□ -1.2
SHMT2-227ENST00000557269 CRYGAP11844 174 aa7.56□□□□□ -1.2
SHMT2-227ENST00000557269 C3orf22Q8N5N4 141 aa7.56□□□□□ -1.2
SHMT2-227ENST00000557269 CLEC2BQ92478 149 aa7.56□□□□□ -1.2
SHMT2-227ENST00000557269 J3QL48 77 aa7.55□□□□□ -1.2
SHMT2-227ENST00000557269 TNXBP22105 4242 aa7.55□□□□□ -1.2
SHMT2-227ENST00000557269 IGLV5-48A0A075B6I7 105 aa7.54□□□□□ -1.2
SHMT2-227ENST00000557269 SPRR1BP22528 89 aa7.54□□□□□ -1.2
SHMT2-227ENST00000557269 Q6ZQY7 126 aa7.54□□□□□ -1.2
SHMT2-227ENST00000557269 Q8N377 158 aa7.53□□□□□ -1.2
SHMT2-227ENST00000557269 TEX49A0A1B0GTD5 131 aa7.52□□□□□ -1.21
SHMT2-227ENST00000557269 TAX1BP3O14907 124 aa7.52□□□□□ -1.21
SHMT2-227ENST00000557269 SMIM29Q86T20 159 aa7.52□□□□□ -1.21
SHMT2-227ENST00000557269 IGLV9-49A0A0B4J1Y8 123 aa7.51□□□□□ -1.21
SHMT2-227ENST00000557269 COX6CP09669 75 aa7.51□□□□□ -1.21
SHMT2-227ENST00000557269 SCGB1C2P0DMR2 95 aa7.51□□□□□ -1.21
SHMT2-227ENST00000557269 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.51□□□□□ -1.21
SHMT2-227ENST00000557269 TYMSOSQ8TAI1 123 aa7.51□□□□□ -1.21
SHMT2-227ENST00000557269 H3BUT2 72 aa7.49□□□□□ -1.21
SHMT2-227ENST00000557269 MOBPQ13875 183 aa7.49□□□□□ -1.21
SHMT2-227ENST00000557269 A0A1B0GX51 115 aa7.48□□□□□ -1.21
SHMT2-227ENST00000557269 C9orf118A6NHY6 69 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms