RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 RPL37AP8A6NKH3 93 aa6.17□□□□□ -1.42
CCDC88C-206ENST00000553437 VPREB1P12018 145 aa6.17□□□□□ -1.42
CCDC88C-206ENST00000553437 TAL2Q16559 108 aa6.17□□□□□ -1.42
CCDC88C-206ENST00000553437 SFTA2Q6UW10 78 aa6.17□□□□□ -1.42
CCDC88C-206ENST00000553437 Q8NDZ9 215 aa6.17□□□□□ -1.42
CCDC88C-206ENST00000553437 IGKV2D-26A0A0A0MRZ7 120 aa6.16□□□□□ -1.42
CCDC88C-206ENST00000553437 BCE1O60756 84 aa6.16□□□□□ -1.42
CCDC88C-206ENST00000553437 Q6ZVH6 145 aa6.16□□□□□ -1.42
CCDC88C-206ENST00000553437 C9orf118A6NHY6 69 aa6.15□□□□□ -1.42
CCDC88C-206ENST00000553437 NKAPP1Q8N9T2 125 aa6.15□□□□□ -1.42
CCDC88C-206ENST00000553437 IGLV1-50A0A075B6I6 118 aa6.14□□□□□ -1.43
CCDC88C-206ENST00000553437 E9PLD3 99 aa6.14□□□□□ -1.43
CCDC88C-206ENST00000553437 HERVK_113P61574 105 aa6.14□□□□□ -1.43
CCDC88C-206ENST00000553437 KRTAP13-1Q8IUC0 172 aa6.14□□□□□ -1.43
CCDC88C-206ENST00000553437 MYMXA0A1B0GTQ4 84 aa6.13□□□□□ -1.43
CCDC88C-206ENST00000553437 RPL28P46779 137 aaKnown RBP6.13□□□□□ -1.43
CCDC88C-206ENST00000553437 LINC00158P58513 81 aa6.13□□□□□ -1.43
CCDC88C-206ENST00000553437 GTF2H5Q6ZYL4 71 aa6.13□□□□□ -1.43
CCDC88C-206ENST00000553437 CEND1Q8N111 149 aa6.13□□□□□ -1.43
CCDC88C-206ENST00000553437 IGKV2-28A0A075B6P5 120 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 A0A0U1RRA0 63 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 IGKV2D-28P01615 120 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 SMIM13P0DJ93 91 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 TSPEAR-AS2P59090 65 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 RPL24P83731 157 aaKnown RBP6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 LCE4AQ5TA78 99 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 TTTY13Q9BZ97 58 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 NDUFA12Q9UI09 145 aa6.12□□□□□ -1.43
CCDC88C-206ENST00000553437 HERV-K104P63124 156 aa6.11□□□□□ -1.43
CCDC88C-206ENST00000553437 TMEM238C9JI98 176 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 H3BUT2 72 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 K7EP34 96 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 M0R378 163 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 LEPROTO15243 131 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 FXYD2P54710 66 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 HIST1H4GQ99525 98 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 TMEM126AQ9H061 195 aa6.1□□□□□ -1.43
CCDC88C-206ENST00000553437 A0A1W2PPM0 123 aa6.09□□□□□ -1.43
CCDC88C-206ENST00000553437 ZNF815PA8K554 130 aa6.09□□□□□ -1.43
CCDC88C-206ENST00000553437 RPL13AP40429 203 aaKnown RBP6.09□□□□□ -1.43
CCDC88C-206ENST00000553437 MEIG1Q5JSS6 88 aa6.09□□□□□ -1.43
CCDC88C-206ENST00000553437 MIR7-3HGQ8N6C7 128 aa6.09□□□□□ -1.43
CCDC88C-206ENST00000553437 A0A087X002 238 aa6.08□□□□□ -1.44
CCDC88C-206ENST00000553437 FABP2P12104 132 aa6.08□□□□□ -1.44
CCDC88C-206ENST00000553437 UBE2AP49459 152 aa6.08□□□□□ -1.44
CCDC88C-206ENST00000553437 RAB37Q96AX2 223 aa6.08□□□□□ -1.44
CCDC88C-206ENST00000553437 PLEKHB2Q96CS7 222 aa6.08□□□□□ -1.44
CCDC88C-206ENST00000553437 NHP2Q9NX24 153 aaKnown RBP6.08□□□□□ -1.44
CCDC88C-206ENST00000553437 A0A1B0GWB2 263 aa6.07□□□□□ -1.44
CCDC88C-206ENST00000553437 J3QQQ9 107 aa6.07□□□□□ -1.44
CCDC88C-206ENST00000553437 PRLHP81277 87 aa6.07□□□□□ -1.44
CCDC88C-206ENST00000553437 ANAPC11Q9NYG5 84 aa6.07□□□□□ -1.44
CCDC88C-206ENST00000553437 CBY1Q9Y3M2 126 aa6.07□□□□□ -1.44
CCDC88C-206ENST00000553437 SPCS1Q9Y6A9 102 aa6.07□□□□□ -1.44
CCDC88C-206ENST00000553437 LOC107984156A0A0G2JMH3 177 aa6.06□□□□□ -1.44
CCDC88C-206ENST00000553437 SCGB1D4Q6XE38 83 aa6.06□□□□□ -1.44
CCDC88C-206ENST00000553437 FAM19A1Q7Z5A9 133 aa6.06□□□□□ -1.44
CCDC88C-206ENST00000553437 ARL17AQ8IVW1 177 aa6.06□□□□□ -1.44
CCDC88C-206ENST00000553437 SPANXB1Q9NS25 103 aaPredicted RBP6.06□□□□□ -1.44
CCDC88C-206ENST00000553437 LPAP08519 4548 aa6.06□□□□□ -1.44
CCDC88C-206ENST00000553437 K7ERJ3 54 aa6.05□□□□□ -1.44
CCDC88C-206ENST00000553437 CRYGAP11844 174 aa6.05□□□□□ -1.44
CCDC88C-206ENST00000553437 LGALS3P17931 250 aaKnown RBP6.05□□□□□ -1.44
CCDC88C-206ENST00000553437 DAND5Q8N907 189 aa6.05□□□□□ -1.44
CCDC88C-206ENST00000553437 NAA38Q9BRA0 125 aaKnown RBP6.05□□□□□ -1.44
CCDC88C-206ENST00000553437 NCR3O14931 201 aa6.04□□□□□ -1.44
CCDC88C-206ENST00000553437 KRTAP13-2Q52LG2 175 aa6.04□□□□□ -1.44
CCDC88C-206ENST00000553437 KCNQ1DNQ9H478 68 aa6.04□□□□□ -1.44
CCDC88C-206ENST00000553437 KRTAP4-16G5E9R7 235 aaPredicted RBP6.03□□□□□ -1.44
CCDC88C-206ENST00000553437 SPRR1AP35321 89 aa6.03□□□□□ -1.44
CCDC88C-206ENST00000553437 FAM229BQ4G0N7 80 aa6.03□□□□□ -1.44
CCDC88C-206ENST00000553437 OCIAD2Q56VL3 154 aa6.03□□□□□ -1.44
CCDC88C-206ENST00000553437 FAT4Q6V0I7 4981 aa6.02□□□□□ -1.45
CCDC88C-206ENST00000553437 A0A0J9YXY3 114 aa6.02□□□□□ -1.45
CCDC88C-206ENST00000553437 TRBV10-3A0A0K0K1G6 114 aa6.02□□□□□ -1.45
CCDC88C-206ENST00000553437 K7ERU9 68 aa6.02□□□□□ -1.45
CCDC88C-206ENST00000553437 PRYO14603 147 aa6.02□□□□□ -1.45
CCDC88C-206ENST00000553437 C21orf62-AS1Q17RA5 79 aa6.02□□□□□ -1.45
CCDC88C-206ENST00000553437 TYMSOSQ8TAI1 123 aa6.02□□□□□ -1.45
CCDC88C-206ENST00000553437 EIF4EBP3O60516 100 aaPredicted RBP6.01□□□□□ -1.45
CCDC88C-206ENST00000553437 ADAMTSL4-AS1Q5T5F5 129 aa6.01□□□□□ -1.45
CCDC88C-206ENST00000553437 LYRM7Q5U5X0 104 aa6.01□□□□□ -1.45
CCDC88C-206ENST00000553437 SOSTDC1Q6X4U4 206 aa6.01□□□□□ -1.45
CCDC88C-206ENST00000553437 LINC00337Q8N6G1 96 aa6.01□□□□□ -1.45
CCDC88C-206ENST00000553437 HIGD2AQ9BW72 106 aa6.01□□□□□ -1.45
CCDC88C-206ENST00000553437 TRBV10-2A0A0K0K1G8 114 aa6□□□□□ -1.45
CCDC88C-206ENST00000553437 LCE5AQ5TCM9 118 aa6□□□□□ -1.45
CCDC88C-206ENST00000553437 NDUFC2O95298 119 aa5.99□□□□□ -1.45
CCDC88C-206ENST00000553437 TSPAN13O95857 204 aa5.99□□□□□ -1.45
CCDC88C-206ENST00000553437 SPRR4Q96PI1 79 aa5.99□□□□□ -1.45
CCDC88C-206ENST00000553437 LITAFQ99732 161 aa5.99□□□□□ -1.45
CCDC88C-206ENST00000553437 F8W1H4 67 aa5.98□□□□□ -1.45
CCDC88C-206ENST00000553437 SMCR5Q8TEV8 140 aa5.98□□□□□ -1.45
CCDC88C-206ENST00000553437 ETDCA0A1B0GVM5 59 aa5.97□□□□□ -1.45
CCDC88C-206ENST00000553437 B5MCH6 92 aa5.97□□□□□ -1.45
CCDC88C-206ENST00000553437 IGLV6-57P01721 117 aa5.97□□□□□ -1.45
CCDC88C-206ENST00000553437 A0A0B4J2C4 111 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 TIMM17BO60830 172 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 CFC1BP0CG36 223 aa5.96□□□□□ -1.46
CCDC88C-206ENST00000553437 CFC1P0CG37 223 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms