RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 KRTAP1-1Q07627 177 aa8.13□□□□□ -1.11
COL4A6-209ENST00000545689 ANKRD17O75179 2603 aaKnown RBP8.13□□□□□ -1.11
COL4A6-209ENST00000545689 PLA2G1BP04054 148 aaKnown RBP8.12□□□□□ -1.11
COL4A6-209ENST00000545689 ATP11AUNQ6ZP68 121 aa8.12□□□□□ -1.11
COL4A6-209ENST00000545689 A0A087WTM6 91 aa8.12□□□□□ -1.11
COL4A6-209ENST00000545689 TLN2Q9Y4G6 2542 aa8.11□□□□□ -1.11
COL4A6-209ENST00000545689 IGLV5-48A0A075B6I7 105 aa8.11□□□□□ -1.11
COL4A6-209ENST00000545689 JMJD1CQ15652 2540 aa8.1□□□□□ -1.11
COL4A6-209ENST00000545689 SPANXA2-OT1Q8N9U9 137 aa8.09□□□□□ -1.11
COL4A6-209ENST00000545689 A0A1W2PNM2 257 aa8.09□□□□□ -1.12
COL4A6-209ENST00000545689 A8MUN3 132 aa8.08□□□□□ -1.12
COL4A6-209ENST00000545689 APLNQ9ULZ1 77 aa8.08□□□□□ -1.12
COL4A6-209ENST00000545689 FAM104AQ969W3 186 aa8.07□□□□□ -1.12
COL4A6-209ENST00000545689 SPRR4Q96PI1 79 aa8.07□□□□□ -1.12
COL4A6-209ENST00000545689 UQCR11O14957 56 aa8.06□□□□□ -1.12
COL4A6-209ENST00000545689 A0A1W2PNN7 141 aa8.06□□□□□ -1.12
COL4A6-209ENST00000545689 DSCR10P59022 87 aa8.06□□□□□ -1.12
COL4A6-209ENST00000545689 IGLV7-43P04211 117 aa8.05□□□□□ -1.12
COL4A6-209ENST00000545689 LINC00304Q8N9R0 145 aa8.05□□□□□ -1.12
COL4A6-209ENST00000545689 ZFYVE26Q68DK2 2539 aa8.02□□□□□ -1.12
COL4A6-209ENST00000545689 WIPF1O43516 503 aa8.02□□□□□ -1.13
COL4A6-209ENST00000545689 CENPFP49454 3210 aa8.02□□□□□ -1.13
COL4A6-209ENST00000545689 CASC10Q5T4H9 136 aa8.01□□□□□ -1.13
COL4A6-209ENST00000545689 PSORS1C2Q9UIG4 136 aa8□□□□□ -1.13
COL4A6-209ENST00000545689 CHD8Q9HCK8 2581 aa7.99□□□□□ -1.13
COL4A6-209ENST00000545689 PKD1L2Q7Z442 2459 aa7.99□□□□□ -1.13
COL4A6-209ENST00000545689 CD164Q04900 197 aa7.99□□□□□ -1.13
COL4A6-209ENST00000545689 OCR1Q9BZK8 76 aa7.98□□□□□ -1.13
COL4A6-209ENST00000545689 A0A0G2JQZ4 141 aa7.97□□□□□ -1.13
COL4A6-209ENST00000545689 MIR22HGQ0VDD5 57 aa7.97□□□□□ -1.13
COL4A6-209ENST00000545689 LINC00336Q6ZUF6 198 aa7.97□□□□□ -1.13
COL4A6-209ENST00000545689 SPTBN4Q9H254 2564 aa7.97□□□□□ -1.13
COL4A6-209ENST00000545689 SETD2Q9BYW2 2564 aaPredicted RBP7.96□□□□□ -1.13
COL4A6-209ENST00000545689 IGLV8-61A0A075B6I0 122 aa7.96□□□□□ -1.14
COL4A6-209ENST00000545689 MTORP42345 2549 aa7.94□□□□□ -1.14
COL4A6-209ENST00000545689 POLQO75417 2590 aa7.93□□□□□ -1.14
COL4A6-209ENST00000545689 Q1T7F1 81 aa7.9□□□□□ -1.14
COL4A6-209ENST00000545689 ANAPC11Q9NYG5 84 aa7.89□□□□□ -1.15
COL4A6-209ENST00000545689 SPRR1AP35321 89 aa7.88□□□□□ -1.15
COL4A6-209ENST00000545689 CDC42SE1Q9NRR8 79 aa7.88□□□□□ -1.15
COL4A6-209ENST00000545689 KTN1-AS1Q86SY8 53 aa7.87□□□□□ -1.15
COL4A6-209ENST00000545689 C9orf92A6NGG3 77 aa7.85□□□□□ -1.15
COL4A6-209ENST00000545689 IGLV7-46A0A075B6I9 117 aa7.85□□□□□ -1.15
COL4A6-209ENST00000545689 ACANP16112 2415 aa7.85□□□□□ -1.15
COL4A6-209ENST00000545689 FAM229BQ4G0N7 80 aa7.84□□□□□ -1.15
COL4A6-209ENST00000545689 SPINT4Q6UDR6 99 aa7.83□□□□□ -1.16
COL4A6-209ENST00000545689 J3QL48 77 aa7.82□□□□□ -1.16
COL4A6-209ENST00000545689 SPRR1BP22528 89 aa7.82□□□□□ -1.16
COL4A6-209ENST00000545689 LCA10Q71F78 164 aa7.81□□□□□ -1.16
COL4A6-209ENST00000545689 CRIPTQ9P021 101 aa7.8□□□□□ -1.16
COL4A6-209ENST00000545689 Q8NDZ9 215 aa7.8□□□□□ -1.16
COL4A6-209ENST00000545689 PLAC8Q9NZF1 115 aa7.79□□□□□ -1.16
COL4A6-209ENST00000545689 RBM12B-AS1Q9P1G2 102 aa7.78□□□□□ -1.16
COL4A6-209ENST00000545689 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.78□□□□□ -1.16
COL4A6-209ENST00000545689 MMP24-AS1A0A0U1RRL7 71 aa7.78□□□□□ -1.16
COL4A6-209ENST00000545689 SMR3BP02814 79 aaPredicted RBP7.76□□□□□ -1.17
COL4A6-209ENST00000545689 Q75L30 129 aa7.76□□□□□ -1.17
COL4A6-209ENST00000545689 FASNP49327 2511 aaKnown RBP7.76□□□□□ -1.17
COL4A6-209ENST00000545689 TNP2Q05952 138 aa7.75□□□□□ -1.17
COL4A6-209ENST00000545689 GOLGB1Q14789 3259 aaKnown RBP7.75□□□□□ -1.17
COL4A6-209ENST00000545689 F8P00451 2351 aa7.75□□□□□ -1.17
COL4A6-209ENST00000545689 CR1P17927 2039 aa7.73□□□□□ -1.17
COL4A6-209ENST00000545689 COX6B2Q6YFQ2 88 aa7.73□□□□□ -1.17
COL4A6-209ENST00000545689 KRTAP26-1Q6PEX3 210 aa7.73□□□□□ -1.17
COL4A6-209ENST00000545689 Q8N1X5 172 aa7.73□□□□□ -1.17
COL4A6-209ENST00000545689 DNAH12Q6ZR08 3092 aa7.72□□□□□ -1.17
COL4A6-209ENST00000545689 HRES1P13985 223 aa7.71□□□□□ -1.17
COL4A6-209ENST00000545689 LINC01558Q9Y6Z2 57 aa7.71□□□□□ -1.17
COL4A6-209ENST00000545689 LINC00472Q9H8W2 130 aa7.71□□□□□ -1.18
COL4A6-209ENST00000545689 PRR26Q8N8Z3 221 aa7.69□□□□□ -1.18
COL4A6-209ENST00000545689 Q5XG85 94 aa7.69□□□□□ -1.18
COL4A6-209ENST00000545689 BPTFQ12830 3046 aa7.69□□□□□ -1.18
COL4A6-209ENST00000545689 Q8N9P0 234 aaPredicted RBP7.66□□□□□ -1.18
COL4A6-209ENST00000545689 ZCCHC13Q8WW36 166 aaKnown RBP7.66□□□□□ -1.18
COL4A6-209ENST00000545689 EPG5Q9HCE0 2579 aa7.63□□□□□ -1.19
COL4A6-209ENST00000545689 CYSTM1Q9H1C7 97 aa7.63□□□□□ -1.19
COL4A6-209ENST00000545689 FP248Q71RG6 208 aaPredicted RBP7.62□□□□□ -1.19
COL4A6-209ENST00000545689 A0A1B0GU33 70 aa7.61□□□□□ -1.19
COL4A6-209ENST00000545689 LINC00483Q53H64 154 aa7.61□□□□□ -1.19
COL4A6-209ENST00000545689 Q5W150 140 aa7.6□□□□□ -1.19
COL4A6-209ENST00000545689 CHD7Q9P2D1 2997 aa7.59□□□□□ -1.19
COL4A6-209ENST00000545689 KRTAP1-5Q9BYS1 174 aa7.58□□□□□ -1.2
COL4A6-209ENST00000545689 Q6ZSA8 131 aa7.58□□□□□ -1.2
COL4A6-209ENST00000545689 A0A0D9SG42 100 aa7.57□□□□□ -1.2
COL4A6-209ENST00000545689 KRTAP4-16G5E9R7 235 aaPredicted RBP7.57□□□□□ -1.2
COL4A6-209ENST00000545689 CHD9Q3L8U1 2897 aa7.57□□□□□ -1.2
COL4A6-209ENST00000545689 FLNAP21333 2647 aaKnown RBP7.56□□□□□ -1.2
COL4A6-209ENST00000545689 Q5VV11 94 aa7.55□□□□□ -1.2
COL4A6-209ENST00000545689 DMAC1Q96GE9 116 aa7.54□□□□□ -1.2
COL4A6-209ENST00000545689 PRRC2CQ9Y520 2896 aaKnown RBP7.53□□□□□ -1.2
COL4A6-209ENST00000545689 HECTD1Q9ULT8 2610 aa7.51□□□□□ -1.21
COL4A6-209ENST00000545689 Q6ZR54 194 aa7.51□□□□□ -1.21
COL4A6-209ENST00000545689 LINC01554Q52M75 96 aa7.49□□□□□ -1.21
COL4A6-209ENST00000545689 ITPR3Q14573 2671 aa7.48□□□□□ -1.21
COL4A6-209ENST00000545689 S4R3F8 94 aa7.48□□□□□ -1.21
COL4A6-209ENST00000545689 KRTAP29-1A8MX34 341 aaPredicted RBP7.48□□□□□ -1.21
COL4A6-209ENST00000545689 CSAG1Q6PB30 78 aa7.46□□□□□ -1.22
COL4A6-209ENST00000545689 OXTP01178 125 aa7.45□□□□□ -1.22
COL4A6-209ENST00000545689 TRANK1O15050 2925 aa7.44□□□□□ -1.22
COL4A6-209ENST00000545689 SPINK7P58062 85 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms