RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 CD164Q04900 197 aa5.24□□□□□ -1.57
VPS13D-211ENST00000543710 PRR34Q9NV39 138 aa5.24□□□□□ -1.57
VPS13D-211ENST00000543710 PIEZO2Q9H5I5 2752 aa5.23□□□□□ -1.57
VPS13D-211ENST00000543710 C4orf26Q17RF5 130 aa5.22□□□□□ -1.57
VPS13D-211ENST00000543710 CEP295Q9C0D2 2601 aa5.22□□□□□ -1.57
VPS13D-211ENST00000543710 PRLHP81277 87 aa5.22□□□□□ -1.57
VPS13D-211ENST00000543710 PRR15Q8IV56 129 aa5.22□□□□□ -1.57
VPS13D-211ENST00000543710 HECTD1Q9ULT8 2610 aa5.21□□□□□ -1.57
VPS13D-211ENST00000543710 COA5Q86WW8 74 aa5.21□□□□□ -1.58
VPS13D-211ENST00000543710 APLNQ9ULZ1 77 aa5.21□□□□□ -1.58
VPS13D-211ENST00000543710 A0A0A0MQY5 61 aa5.21□□□□□ -1.58
VPS13D-211ENST00000543710 SEC61BP60468 96 aaKnown RBP5.21□□□□□ -1.58
VPS13D-211ENST00000543710 HCFC1P51610 2035 aa5.2□□□□□ -1.58
VPS13D-211ENST00000543710 LUZP6Q538Z0 58 aa5.2□□□□□ -1.58
VPS13D-211ENST00000543710 UQCR11O14957 56 aa5.2□□□□□ -1.58
VPS13D-211ENST00000543710 A0A1B0GVX0 72 aa5.19□□□□□ -1.58
VPS13D-211ENST00000543710 C15orf56Q8N910 161 aa5.19□□□□□ -1.58
VPS13D-211ENST00000543710 CNBPP62633 177 aaKnown RBP5.19□□□□□ -1.58
VPS13D-211ENST00000543710 ST20-AS1Q8NBB2 130 aa5.19□□□□□ -1.58
VPS13D-211ENST00000543710 C8orf17Q9NRJ1 99 aa5.19□□□□□ -1.58
VPS13D-211ENST00000543710 DSCAML1Q8TD84 2053 aa5.18□□□□□ -1.58
VPS13D-211ENST00000543710 A8MUN3 132 aa5.18□□□□□ -1.58
VPS13D-211ENST00000543710 BAHCC1Q9P281 2608 aa5.18□□□□□ -1.58
VPS13D-211ENST00000543710 BPTFQ12830 3046 aa5.17□□□□□ -1.58
VPS13D-211ENST00000543710 SPINK1P00995 79 aa5.17□□□□□ -1.58
VPS13D-211ENST00000543710 Q5VSD8 79 aa5.17□□□□□ -1.58
VPS13D-211ENST00000543710 Q6ZSA8 131 aa5.17□□□□□ -1.58
VPS13D-211ENST00000543710 Q1T7F1 81 aa5.17□□□□□ -1.58
VPS13D-211ENST00000543710 NCOA6Q14686 2063 aaPredicted RBP5.16□□□□□ -1.58
VPS13D-211ENST00000543710 IGKV2D-30A0A075B6S6 120 aa5.15□□□□□ -1.58
VPS13D-211ENST00000543710 IGKV2-30P06310 120 aa5.15□□□□□ -1.58
VPS13D-211ENST00000543710 PHF5AQ7RTV0 110 aaKnown RBP5.15□□□□□ -1.58
VPS13D-211ENST00000543710 CHTF8P0CG12 524 aa5.15□□□□□ -1.59
VPS13D-211ENST00000543710 IGFL1Q6UW32 110 aa5.15□□□□□ -1.59
VPS13D-211ENST00000543710 KRTAP1-3Q8IUG1 177 aa5.15□□□□□ -1.59
VPS13D-211ENST00000543710 KRTAP1-1Q07627 177 aa5.14□□□□□ -1.59
VPS13D-211ENST00000543710 ANKRD17O75179 2603 aaKnown RBP5.14□□□□□ -1.59
VPS13D-211ENST00000543710 A0A096LNT2 108 aa5.14□□□□□ -1.59
VPS13D-211ENST00000543710 TLN2Q9Y4G6 2542 aa5.14□□□□□ -1.59
VPS13D-211ENST00000543710 HELZ2Q9BYK8 2649 aaKnown RBP5.14□□□□□ -1.59
VPS13D-211ENST00000543710 IGLV7-46A0A075B6I9 117 aa5.14□□□□□ -1.59
VPS13D-211ENST00000543710 CDC42SE1Q9NRR8 79 aa5.14□□□□□ -1.59
VPS13D-211ENST00000543710 LCA10Q71F78 164 aa5.14□□□□□ -1.59
VPS13D-211ENST00000543710 LAMA2P24043 3122 aaKnown RBP5.14□□□□□ -1.59
VPS13D-211ENST00000543710 K7EQZ3 153 aa5.13□□□□□ -1.59
VPS13D-211ENST00000543710 MIR22HGQ0VDD5 57 aa5.13□□□□□ -1.59
VPS13D-211ENST00000543710 KRTAP3-3Q9BYR6 98 aa5.13□□□□□ -1.59
VPS13D-211ENST00000543710 KRTAP3-2Q9BYR7 98 aa5.13□□□□□ -1.59
VPS13D-211ENST00000543710 ZNF861PO60384 105 aa5.12□□□□□ -1.59
VPS13D-211ENST00000543710 IGLV5-48A0A075B6I7 105 aa5.12□□□□□ -1.59
VPS13D-211ENST00000543710 DEFB116Q30KQ4 102 aa5.12□□□□□ -1.59
VPS13D-211ENST00000543710 WDR87Q6ZQQ6 2873 aa5.12□□□□□ -1.59
VPS13D-211ENST00000543710 H7BZZ5 65 aa5.11□□□□□ -1.59
VPS13D-211ENST00000543710 Q96NJ1 140 aa5.11□□□□□ -1.59
VPS13D-211ENST00000543710 ACANP16112 2415 aa5.1□□□□□ -1.59
VPS13D-211ENST00000543710 TNP2Q05952 138 aa5.1□□□□□ -1.59
VPS13D-211ENST00000543710 CAMK2N1Q7Z7J9 78 aa5.09□□□□□ -1.59
VPS13D-211ENST00000543710 CRIPTQ9P021 101 aa5.09□□□□□ -1.59
VPS13D-211ENST00000543710 C9orf129Q5T035 196 aaKnown RBP5.09□□□□□ -1.6
VPS13D-211ENST00000543710 Q8N377 158 aa5.09□□□□□ -1.6
VPS13D-211ENST00000543710 ASB16-AS1Q495Z4 193 aa5.08□□□□□ -1.6
VPS13D-211ENST00000543710 PLAC4Q8WY50 150 aa5.08□□□□□ -1.6
VPS13D-211ENST00000543710 SPRR4Q96PI1 79 aa5.08□□□□□ -1.6
VPS13D-211ENST00000543710 FAM229BQ4G0N7 80 aa5.08□□□□□ -1.6
VPS13D-211ENST00000543710 Q75L30 129 aa5.08□□□□□ -1.6
VPS13D-211ENST00000543710 USP9YO00507 2555 aaPredicted RBP5.07□□□□□ -1.6
VPS13D-211ENST00000543710 SETXQ7Z333 2677 aaKnown RBP5.07□□□□□ -1.6
VPS13D-211ENST00000543710 KRTAP10-3P60369 221 aa5.06□□□□□ -1.6
VPS13D-211ENST00000543710 MGAM2Q2M2H8 2515 aa5.06□□□□□ -1.6
VPS13D-211ENST00000543710 IGLV7-43P04211 117 aa5.06□□□□□ -1.6
VPS13D-211ENST00000543710 IGLV8-61A0A075B6I0 122 aa5.05□□□□□ -1.6
VPS13D-211ENST00000543710 Q9UF83 564 aa5.04□□□□□ -1.6
VPS13D-211ENST00000543710 DNAH12Q6ZR08 3092 aa5.04□□□□□ -1.6
VPS13D-211ENST00000543710 EIF4EBP3O60516 100 aaPredicted RBP5.03□□□□□ -1.6
VPS13D-211ENST00000543710 PRAC1Q96KF2 57 aa5.02□□□□□ -1.61
VPS13D-211ENST00000543710 GIG44P09565 113 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-211ENST00000543710 OCR1Q9BZK8 76 aa5.02□□□□□ -1.61
VPS13D-211ENST00000543710 LAMA3Q16787 3333 aa5.02□□□□□ -1.61
VPS13D-211ENST00000543710 PLXNB1O43157 2135 aa5.01□□□□□ -1.61
VPS13D-211ENST00000543710 LINC00483Q53H64 154 aa5.01□□□□□ -1.61
VPS13D-211ENST00000543710 MAST4O15021 2626 aa5.01□□□□□ -1.61
VPS13D-211ENST00000543710 SETD2Q9BYW2 2564 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-211ENST00000543710 FAM168BA1KXE4 195 aa5.01□□□□□ -1.61
VPS13D-211ENST00000543710 LINC01558Q9Y6Z2 57 aa5□□□□□ -1.61
VPS13D-211ENST00000543710 KRTAP16-1A8MUX0 517 aa5□□□□□ -1.61
VPS13D-211ENST00000543710 DSCR10P59022 87 aa5□□□□□ -1.61
VPS13D-211ENST00000543710 ARHGAP32A7KAX9 2087 aa4.99□□□□□ -1.61
VPS13D-211ENST00000543710 SPRR1BP22528 89 aa4.99□□□□□ -1.61
VPS13D-211ENST00000543710 A0A1W2PNM2 257 aa4.97□□□□□ -1.61
VPS13D-211ENST00000543710 HTTP42858 3142 aa4.96□□□□□ -1.62
VPS13D-211ENST00000543710 Q8N1X5 172 aa4.95□□□□□ -1.62
VPS13D-211ENST00000543710 SPRR1AP35321 89 aa4.95□□□□□ -1.62
VPS13D-211ENST00000543710 VCANP13611 3396 aa4.94□□□□□ -1.62
VPS13D-211ENST00000543710 A0A0C4DFX4 3053 aa4.94□□□□□ -1.62
VPS13D-211ENST00000543710 C9orf92A6NGG3 77 aa4.94□□□□□ -1.62
VPS13D-211ENST00000543710 DMAC1Q96GE9 116 aa4.94□□□□□ -1.62
VPS13D-211ENST00000543710 HRES1P13985 223 aa4.94□□□□□ -1.62
VPS13D-211ENST00000543710 FP248Q71RG6 208 aaPredicted RBP4.93□□□□□ -1.62
VPS13D-211ENST00000543710 PLAC8Q9NZF1 115 aa4.92□□□□□ -1.62
VPS13D-211ENST00000543710 STAB1Q9NY15 2570 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms