RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 Q1T7F1 81 aa13.08□□□□□ -0.32
HDAC4-215ENST00000543185 Q96NJ1 140 aa13.08□□□□□ -0.32
HDAC4-215ENST00000543185 LUZP6Q538Z0 58 aa13.07□□□□□ -0.32
HDAC4-215ENST00000543185 ITPR3Q14573 2671 aa13.06□□□□□ -0.32
HDAC4-215ENST00000543185 CDSNQ15517 529 aa13.05□□□□□ -0.32
HDAC4-215ENST00000543185 NOTCH1P46531 2555 aa13.05□□□□□ -0.32
HDAC4-215ENST00000543185 A0A1B0GVX0 72 aa13.04□□□□□ -0.32
HDAC4-215ENST00000543185 LINC00528Q8N1L1 170 aa13.04□□□□□ -0.32
HDAC4-215ENST00000543185 GCN1Q92616 2671 aaKnown RBP13.03□□□□□ -0.32
HDAC4-215ENST00000543185 STAB1Q9NY15 2570 aa13.03□□□□□ -0.32
HDAC4-215ENST00000543185 KLK9Q2XQG4 91 aa13.01□□□□□ -0.33
HDAC4-215ENST00000543185 CHD6Q8TD26 2715 aa13.01□□□□□ -0.33
HDAC4-215ENST00000543185 RTL8CO15255 209 aa12.99□□□□□ -0.33
HDAC4-215ENST00000543185 PHF5AQ7RTV0 110 aaKnown RBP12.98□□□□□ -0.33
HDAC4-215ENST00000543185 C8orf17Q9NRJ1 99 aa12.98□□□□□ -0.33
HDAC4-215ENST00000543185 APLNQ9ULZ1 77 aa12.97□□□□□ -0.33
HDAC4-215ENST00000543185 IGFL1Q6UW32 110 aa12.96□□□□□ -0.34
HDAC4-215ENST00000543185 NBDYA0A0U1RRE5 68 aa12.95□□□□□ -0.34
HDAC4-215ENST00000543185 IGLV1-50A0A075B6I6 118 aa12.95□□□□□ -0.34
HDAC4-215ENST00000543185 Q8NAQ8 132 aa12.94□□□□□ -0.34
HDAC4-215ENST00000543185 EP400Q96L91 3159 aa12.94□□□□□ -0.34
HDAC4-215ENST00000543185 PLA2G2DQ9UNK4 145 aa12.93□□□□□ -0.34
HDAC4-215ENST00000543185 PRO3102Q9H379 93 aa12.93□□□□□ -0.34
HDAC4-215ENST00000543185 CHTF8P0CG12 524 aa12.91□□□□□ -0.34
HDAC4-215ENST00000543185 SMR3AQ99954 134 aa12.9□□□□□ -0.34
HDAC4-215ENST00000543185 HELZ2Q9BYK8 2649 aaKnown RBP12.88□□□□□ -0.35
HDAC4-215ENST00000543185 A0A1W2PPR1 153 aa12.88□□□□□ -0.35
HDAC4-215ENST00000543185 LINC00588Q9Y4M8 146 aa12.87□□□□□ -0.35
HDAC4-215ENST00000543185 FAM104AQ969W3 186 aa12.86□□□□□ -0.35
HDAC4-215ENST00000543185 C9orf129Q5T035 196 aaKnown RBP12.85□□□□□ -0.35
HDAC4-215ENST00000543185 TLX1NBP0CAT3 122 aa12.85□□□□□ -0.35
HDAC4-215ENST00000543185 LINC01554Q52M75 96 aa12.84□□□□□ -0.35
HDAC4-215ENST00000543185 FAM168BA1KXE4 195 aa12.84□□□□□ -0.35
HDAC4-215ENST00000543185 C15orf56Q8N910 161 aa12.84□□□□□ -0.35
HDAC4-215ENST00000543185 Q75L30 129 aa12.84□□□□□ -0.35
HDAC4-215ENST00000543185 PRR34Q9NV39 138 aa12.84□□□□□ -0.35
HDAC4-215ENST00000543185 DMBT1Q9UGM3 2413 aaPredicted RBP12.83□□□□□ -0.35
HDAC4-215ENST00000543185 OBSCN-AS1Q96MR7 158 aa12.83□□□□□ -0.36
HDAC4-215ENST00000543185 UNC79Q9P2D8 2635 aa12.83□□□□□ -0.36
HDAC4-215ENST00000543185 SRCAPQ6ZRS2 3230 aa12.82□□□□□ -0.36
HDAC4-215ENST00000543185 Q8N377 158 aa12.81□□□□□ -0.36
HDAC4-215ENST00000543185 LINC00304Q8N9R0 145 aa12.8□□□□□ -0.36
HDAC4-215ENST00000543185 ZNF861PO60384 105 aa12.8□□□□□ -0.36
HDAC4-215ENST00000543185 COL6A5A8TX70 2615 aa12.79□□□□□ -0.36
HDAC4-215ENST00000543185 KRTAP10-9P60411 292 aa12.79□□□□□ -0.36
HDAC4-215ENST00000543185 KMT2BQ9UMN6 2715 aaPredicted RBP12.78□□□□□ -0.36
HDAC4-215ENST00000543185 TEX15Q9BXT5 2789 aa12.78□□□□□ -0.36
HDAC4-215ENST00000543185 LINC00483Q53H64 154 aa12.74□□□□□ -0.37
HDAC4-215ENST00000543185 CSNK1G2-AS1Q8NCQ2 148 aa12.74□□□□□ -0.37
HDAC4-215ENST00000543185 DSCR10P59022 87 aa12.74□□□□□ -0.37
HDAC4-215ENST00000543185 OCR1Q9BZK8 76 aa12.73□□□□□ -0.37
HDAC4-215ENST00000543185 RBM12B-AS1Q9P1G2 102 aa12.71□□□□□ -0.37
HDAC4-215ENST00000543185 STAB2Q8WWQ8 2551 aa12.71□□□□□ -0.38
HDAC4-215ENST00000543185 IGLV5-48A0A075B6I7 105 aa12.69□□□□□ -0.38
HDAC4-215ENST00000543185 COX6B2Q6YFQ2 88 aa12.66□□□□□ -0.38
HDAC4-215ENST00000543185 DMAC1Q96GE9 116 aa12.65□□□□□ -0.38
HDAC4-215ENST00000543185 IGLV7-46A0A075B6I9 117 aa12.63□□□□□ -0.39
HDAC4-215ENST00000543185 A0A0A0MQY5 61 aa12.61□□□□□ -0.39
HDAC4-215ENST00000543185 SPRR4Q96PI1 79 aa12.6□□□□□ -0.39
HDAC4-215ENST00000543185 CNBPP62633 177 aaKnown RBP12.6□□□□□ -0.39
HDAC4-215ENST00000543185 EIF4EBP3O60516 100 aaPredicted RBP12.59□□□□□ -0.39
HDAC4-215ENST00000543185 MAP1AP78559 2803 aaPredicted RBP12.58□□□□□ -0.4
HDAC4-215ENST00000543185 IGLV5-37A0A075B6J1 123 aa12.57□□□□□ -0.4
HDAC4-215ENST00000543185 LINC00612Q8N6U2 182 aa12.56□□□□□ -0.4
HDAC4-215ENST00000543185 A0A1B0GU33 70 aa12.54□□□□□ -0.4
HDAC4-215ENST00000543185 A0A0D9SG42 100 aa12.54□□□□□ -0.4
HDAC4-215ENST00000543185 H3BS24 57 aa12.53□□□□□ -0.4
HDAC4-215ENST00000543185 DNAH12Q6ZR08 3092 aa12.52□□□□□ -0.41
HDAC4-215ENST00000543185 C9orf163Q8N9P6 203 aa12.5□□□□□ -0.41
HDAC4-215ENST00000543185 A0A1W2PNM2 257 aa12.49□□□□□ -0.41
HDAC4-215ENST00000543185 IGLV7-43P04211 117 aa12.49□□□□□ -0.41
HDAC4-215ENST00000543185 TEP1Q99973 2627 aaKnown RBP12.47□□□□□ -0.41
HDAC4-215ENST00000543185 CEP350Q5VT06 3117 aa12.46□□□□□ -0.41
HDAC4-215ENST00000543185 WWC2-AS2Q96NR7 200 aa12.45□□□□□ -0.42
HDAC4-215ENST00000543185 C9orf92A6NGG3 77 aa12.45□□□□□ -0.42
HDAC4-215ENST00000543185 J3QL48 77 aa12.44□□□□□ -0.42
HDAC4-215ENST00000543185 ASB16-AS1Q495Z4 193 aa12.44□□□□□ -0.42
HDAC4-215ENST00000543185 LINC01558Q9Y6Z2 57 aa12.43□□□□□ -0.42
HDAC4-215ENST00000543185 Q8N1X5 172 aa12.43□□□□□ -0.42
HDAC4-215ENST00000543185 Q5XG85 94 aa12.43□□□□□ -0.42
HDAC4-215ENST00000543185 ITPR2Q14571 2701 aa12.42□□□□□ -0.42
HDAC4-215ENST00000543185 BAHCC1Q9P281 2608 aa12.41□□□□□ -0.42
HDAC4-215ENST00000543185 Q8N9P0 234 aaPredicted RBP12.4□□□□□ -0.42
HDAC4-215ENST00000543185 ZNF292O60281 2723 aa12.4□□□□□ -0.42
HDAC4-215ENST00000543185 APCP25054 2843 aa12.39□□□□□ -0.43
HDAC4-215ENST00000543185 PSORS1C2Q9UIG4 136 aa12.39□□□□□ -0.43
HDAC4-215ENST00000543185 A0A087WTM6 91 aa12.39□□□□□ -0.43
HDAC4-215ENST00000543185 GIG44P09565 113 aaPredicted RBP12.35□□□□□ -0.43
HDAC4-215ENST00000543185 PRR26Q8N8Z3 221 aa12.33□□□□□ -0.44
HDAC4-215ENST00000543185 C19orf73Q9NVV2 129 aa12.33□□□□□ -0.44
HDAC4-215ENST00000543185 CAMK2N1Q7Z7J9 78 aa12.31□□□□□ -0.44
HDAC4-215ENST00000543185 Q5VV11 94 aa12.3□□□□□ -0.44
HDAC4-215ENST00000543185 HRES1P13985 223 aa12.3□□□□□ -0.44
HDAC4-215ENST00000543185 FP248Q71RG6 208 aaPredicted RBP12.29□□□□□ -0.44
HDAC4-215ENST00000543185 TNP2Q05952 138 aa12.29□□□□□ -0.44
HDAC4-215ENST00000543185 FAM229BQ4G0N7 80 aa12.29□□□□□ -0.44
HDAC4-215ENST00000543185 SETXQ7Z333 2677 aaKnown RBP12.28□□□□□ -0.44
HDAC4-215ENST00000543185 KRTAP24-1Q3LI83 254 aa12.26□□□□□ -0.45
HDAC4-215ENST00000543185 A0A0G2JQZ4 141 aa12.26□□□□□ -0.45
HDAC4-215ENST00000543185 A0A1W2PNN7 141 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms