RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 FAM223BA6NKX1 122 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 NDUFA3O95167 84 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 OR2H2O95918 312 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 APOC1P02654 83 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 TCRAP04437 139 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 MPC1LP0DKB6 136 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 KRTAP6-1Q3LI64 71 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 HSD17B12Q53GQ0 312 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 CLPSL2Q6UWE3 100 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 HEPN1Q6WQI6 88 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 FAM223AQ8IWN6 122 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 TTC9CQ8N5M4 171 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 MAGOHBQ96A72 148 aaKnown RBP0.12□□□□□ -2.39
PRKDC-210ENST00000541488 USMG5Q96IX5 58 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 DSCR8Q96T75 97 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 RHPN1-AS1Q9BWJ2 59 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 SPRR2GQ9BYE4 73 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 TAS2R8Q9NYW2 309 aa0.12□□□□□ -2.39
PRKDC-210ENST00000541488 TIMM8BQ9Y5J9 83 aaPredicted RBP0.12□□□□□ -2.39
PRKDC-210ENST00000541488 TRAV12-2A0A075B6T6 113 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 M0R2Z0 102 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 HLA-DRB4P13762 266 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 RPS29P62273 56 aaKnown RBP0.11□□□□□ -2.39
PRKDC-210ENST00000541488 UBE2D2P62837 147 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 SMIM21Q3B7S5 101 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 MMGT1Q8N4V1 131 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 MT1LQ93083 61 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 HLA-DRB4X5D2U9 266 aa0.11□□□□□ -2.39
PRKDC-210ENST00000541488 TRAV36DV7A0A075B6V5 113 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 TRGV1A0A0A0MS02 117 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 NDUFA4O00483 81 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 YPEL1O60688 119 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 SFTA3P0C7M3 94 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 AKR1D1P51857 326 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 IQCJQ1A5X6 159 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 C9orf116Q5BN46 136 aaPredicted RBP0.1□□□□□ -2.39
PRKDC-210ENST00000541488 C10orf128Q5T292 105 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 TMEM91Q6ZNR0 172 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 SLC25A26Q70HW3 274 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 COMMD6Q7Z4G1 85 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 TMEM263Q8WUH6 116 aaKnown RBP0.1□□□□□ -2.39
PRKDC-210ENST00000541488 CALML5Q9NZT1 146 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 PRO0255Q9UI72 69 aa0.1□□□□□ -2.39
PRKDC-210ENST00000541488 NOP16Q9Y3C1 178 aaKnown RBP0.1□□□□□ -2.39
PRKDC-210ENST00000541488 GNG14A0A1W2PPG7 69 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 SMIM24O75264 130 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 CD3DP04234 171 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 HMGN2P05204 90 aaKnown RBP0.09□□□□□ -2.4
PRKDC-210ENST00000541488 NBEAP1P0C6P0 100 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 PYYP10082 97 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 SPAG11AQ6PDA7 123 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 ENHOQ6UWT2 76 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 TMEM167AQ8TBQ9 72 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 TMEM141Q96I45 108 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 BET1LQ9NYM9 111 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 LINC00474Q9P2X8 69 aa0.09□□□□□ -2.4
PRKDC-210ENST00000541488 BORCS7-ASMTA0A0B4J1R7 106 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 I3L2K1 104 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 M0R135 149 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 DEGS1O15121 323 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 SPINK4O60575 86 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 SPINK1P00995 79 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 SAA2P0DJI9 122 aaPredicted RBP0.08□□□□□ -2.4
PRKDC-210ENST00000541488 KRTAP19-5Q3LI72 72 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 ATP11AUNQ6ZP68 121 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 TCTE3Q8IZS6 198 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 PRR15LQ9BU68 103 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 RERGLQ9H628 205 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 DNAJC15Q9Y5T4 150 aa0.08□□□□□ -2.4
PRKDC-210ENST00000541488 TRBV7-1A0A0A6YYK4 115 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 FAM24AA6NFZ4 105 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 C9JAW5 83 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 H0YJX3 145 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 MT1AP04731 61 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 DBIP07108 87 aaKnown RBP0.07□□□□□ -2.4
PRKDC-210ENST00000541488 RPS27P42677 84 aaKnown RBP0.07□□□□□ -2.4
PRKDC-210ENST00000541488 PRCDQ00LT1 54 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 Q0VG73 95 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 CCDC153Q494R4 210 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 Q56UQ5 140 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 RPL39P5Q59GN2 51 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 SDF2Q99470 211 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 BANF2Q9H503 90 aa0.07□□□□□ -2.4
PRKDC-210ENST00000541488 PVALEFA0A1B0GWK0 134 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 RBAKDNA6NC62 111 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 F2Z2F3 143 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 ZNF670-ZNF695F2Z2N8 137 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 CCDC179H3BU77 68 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 MT-ND4LP03901 98 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 GUCA1AP43080 201 aaPredicted RBP0.06□□□□□ -2.4
PRKDC-210ENST00000541488 B2MP61769 119 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 COPZ1P61923 177 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 PRLHP81277 87 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 EMX2Q04743 252 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 TMEM244Q5VVB8 128 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 TMEM203Q969S6 136 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 DPY30Q9C005 99 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 ERG28Q9UKR5 140 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 HIGD1AQ9Y241 93 aa0.06□□□□□ -2.4
PRKDC-210ENST00000541488 A0A1B0GWA3 101 aa0.05□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms