RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 NCR3O14931 201 aa12.5□□□□□ -0.41
USP53-208ENST00000514305 HNRNPA3P51991 378 aaKnown RBP12.5□□□□□ -0.41
USP53-208ENST00000514305 LCE1DQ5T752 114 aa12.5□□□□□ -0.41
USP53-208ENST00000514305 SOSTDC1Q6X4U4 206 aa12.5□□□□□ -0.41
USP53-208ENST00000514305 FAT3Q8TDW7 4589 aa12.49□□□□□ -0.41
USP53-208ENST00000514305 PSORS1C2Q9UIG4 136 aa12.48□□□□□ -0.41
USP53-208ENST00000514305 IGLV1-50A0A075B6I6 118 aa12.47□□□□□ -0.41
USP53-208ENST00000514305 RPL37AP8A6NKH3 93 aa12.47□□□□□ -0.41
USP53-208ENST00000514305 H3BS24 57 aa12.47□□□□□ -0.41
USP53-208ENST00000514305 PRR3P79522 188 aaKnown RBP12.47□□□□□ -0.41
USP53-208ENST00000514305 TAL2Q16559 108 aa12.47□□□□□ -0.41
USP53-208ENST00000514305 C1orf137Q5JT78 98 aa12.47□□□□□ -0.41
USP53-208ENST00000514305 IGKV2-28A0A075B6P5 120 aa12.46□□□□□ -0.41
USP53-208ENST00000514305 IGKV2D-28P01615 120 aa12.46□□□□□ -0.41
USP53-208ENST00000514305 DDTP30046 118 aa12.46□□□□□ -0.41
USP53-208ENST00000514305 Q8NDZ9 215 aa12.46□□□□□ -0.41
USP53-208ENST00000514305 OR13C6PQ8NH95 151 aa12.45□□□□□ -0.42
USP53-208ENST00000514305 TMEM126AQ9H061 195 aa12.45□□□□□ -0.42
USP53-208ENST00000514305 TRAV13-2A0A0B4J235 113 aa12.43□□□□□ -0.42
USP53-208ENST00000514305 PRYO14603 147 aa12.43□□□□□ -0.42
USP53-208ENST00000514305 REG3GQ6UW15 175 aa12.43□□□□□ -0.42
USP53-208ENST00000514305 C12orf57Q99622 126 aa12.42□□□□□ -0.42
USP53-208ENST00000514305 TRBV10-3A0A0K0K1G6 114 aa12.41□□□□□ -0.42
USP53-208ENST00000514305 C2orf91Q6ZV80 131 aa12.41□□□□□ -0.42
USP53-208ENST00000514305 TSTD3H0UI37 97 aa12.4□□□□□ -0.42
USP53-208ENST00000514305 BCE1O60756 84 aa12.4□□□□□ -0.42
USP53-208ENST00000514305 HINT1P49773 126 aaPredicted RBP12.4□□□□□ -0.42
USP53-208ENST00000514305 KCNQ1DNQ9H478 68 aa12.4□□□□□ -0.42
USP53-208ENST00000514305 IGLV6-57P01721 117 aa12.39□□□□□ -0.43
USP53-208ENST00000514305 A4D1N5 150 aa12.38□□□□□ -0.43
USP53-208ENST00000514305 A6NDN8 102 aa12.38□□□□□ -0.43
USP53-208ENST00000514305 IGLV7-43P04211 117 aa12.38□□□□□ -0.43
USP53-208ENST00000514305 HSD52Q0P140 79 aa12.38□□□□□ -0.43
USP53-208ENST00000514305 CEND1Q8N111 149 aa12.38□□□□□ -0.43
USP53-208ENST00000514305 RPL28P46779 137 aaKnown RBP12.37□□□□□ -0.43
USP53-208ENST00000514305 UBE2AP49459 152 aa12.37□□□□□ -0.43
USP53-208ENST00000514305 KRTAP11-1Q8IUC1 163 aa12.37□□□□□ -0.43
USP53-208ENST00000514305 HMCN2Q8NDA2 5059 aa12.37□□□□□ -0.43
USP53-208ENST00000514305 TRAV23DV6A0A075B6W5 121 aa12.36□□□□□ -0.43
USP53-208ENST00000514305 SPINK6Q6UWN8 80 aa12.36□□□□□ -0.43
USP53-208ENST00000514305 KRTAP4-7Q9BYR0 210 aa12.36□□□□□ -0.43
USP53-208ENST00000514305 PRO1933Q9H354 126 aa12.36□□□□□ -0.43
USP53-208ENST00000514305 ETDCA0A1B0GVM5 59 aa12.35□□□□□ -0.43
USP53-208ENST00000514305 FAM19A1Q7Z5A9 133 aa12.35□□□□□ -0.43
USP53-208ENST00000514305 ZNF861PO60384 105 aa12.34□□□□□ -0.43
USP53-208ENST00000514305 MT1HL1P0DM35 61 aa12.34□□□□□ -0.43
USP53-208ENST00000514305 LCE4AQ5TA78 99 aa12.34□□□□□ -0.43
USP53-208ENST00000514305 LINC00337Q8N6G1 96 aa12.34□□□□□ -0.43
USP53-208ENST00000514305 DIRC1Q969H9 104 aa12.33□□□□□ -0.44
USP53-208ENST00000514305 RAB37Q96AX2 223 aa12.33□□□□□ -0.44
USP53-208ENST00000514305 ZNF73O43830 326 aaPredicted RBP12.31□□□□□ -0.44
USP53-208ENST00000514305 SPRR1AP35321 89 aa12.31□□□□□ -0.44
USP53-208ENST00000514305 H0Y9J4 135 aa12.3□□□□□ -0.44
USP53-208ENST00000514305 A0A0B4J2C4 111 aa12.28□□□□□ -0.44
USP53-208ENST00000514305 VAMP3Q15836 100 aa12.27□□□□□ -0.45
USP53-208ENST00000514305 M0R143 59 aa12.26□□□□□ -0.45
USP53-208ENST00000514305 CFC1BP0CG36 223 aa12.26□□□□□ -0.45
USP53-208ENST00000514305 CFC1P0CG37 223 aa12.26□□□□□ -0.45
USP53-208ENST00000514305 TRBV7-6A0A0J9YX20 115 aa12.25□□□□□ -0.45
USP53-208ENST00000514305 RPL13AP40429 203 aaKnown RBP12.25□□□□□ -0.45
USP53-208ENST00000514305 FXYD2P54710 66 aa12.24□□□□□ -0.45
USP53-208ENST00000514305 UBR4Q5T4S7 5183 aa12.24□□□□□ -0.45
USP53-208ENST00000514305 B5MCH6 92 aa12.23□□□□□ -0.45
USP53-208ENST00000514305 KRTAP4-16G5E9R7 235 aaPredicted RBP12.23□□□□□ -0.45
USP53-208ENST00000514305 PRLHP81277 87 aa12.23□□□□□ -0.45
USP53-208ENST00000514305 C6orf99Q4VX62 202 aa12.23□□□□□ -0.45
USP53-208ENST00000514305 LINC01600Q96MT4 127 aa12.23□□□□□ -0.45
USP53-208ENST00000514305 COX7BP24311 80 aa12.22□□□□□ -0.45
USP53-208ENST00000514305 CTAG1AP78358 180 aa12.22□□□□□ -0.45
USP53-208ENST00000514305 Q6ZRX8 168 aa12.22□□□□□ -0.45
USP53-208ENST00000514305 KRTAP13-1Q8IUC0 172 aa12.22□□□□□ -0.45
USP53-208ENST00000514305 SMIM11BQ8TCY0 68 aa12.22□□□□□ -0.45
USP53-208ENST00000514305 HIGD2AQ9BW72 106 aa12.22□□□□□ -0.45
USP53-208ENST00000514305 PRO1854Q9UHT4 67 aa12.22□□□□□ -0.45
USP53-208ENST00000514305 A0A1B0GWB2 263 aa12.21□□□□□ -0.45
USP53-208ENST00000514305 NHP2Q9NX24 153 aaKnown RBP12.21□□□□□ -0.45
USP53-208ENST00000514305 Q1RN00 199 aa12.2□□□□□ -0.46
USP53-208ENST00000514305 BVES-AS1Q5T3Y7 98 aa12.2□□□□□ -0.46
USP53-208ENST00000514305 DHRS4-AS1Q9P1J3 65 aa12.2□□□□□ -0.46
USP53-208ENST00000514305 ZNF706Q9Y5V0 76 aaPredicted RBP12.2□□□□□ -0.46
USP53-208ENST00000514305 ELOF1P60002 83 aaKnown RBP12.18□□□□□ -0.46
USP53-208ENST00000514305 H7C2G1 150 aa12.17□□□□□ -0.46
USP53-208ENST00000514305 SLC25A20O43772 301 aa12.17□□□□□ -0.46
USP53-208ENST00000514305 SNCGO76070 127 aa12.17□□□□□ -0.46
USP53-208ENST00000514305 KRTAP19-4Q3LI73 84 aa12.17□□□□□ -0.46
USP53-208ENST00000514305 TNXBP22105 4242 aa12.16□□□□□ -0.46
USP53-208ENST00000514305 SMCR5Q8TEV8 140 aa12.16□□□□□ -0.46
USP53-208ENST00000514305 KRTAP4-9Q9BYQ8 210 aa12.13□□□□□ -0.47
USP53-208ENST00000514305 H0YGX0 51 aa12.12□□□□□ -0.47
USP53-208ENST00000514305 COX6CP09669 75 aa12.11□□□□□ -0.47
USP53-208ENST00000514305 KRTAP9-7A8MTY7 169 aa12.1□□□□□ -0.47
USP53-208ENST00000514305 Q9BRP9 147 aa12.1□□□□□ -0.47
USP53-208ENST00000514305 PSMB2P49721 201 aa12.09□□□□□ -0.47
USP53-208ENST00000514305 KRTAP10-8P60410 259 aa12.09□□□□□ -0.47
USP53-208ENST00000514305 K7ERJ3 54 aa12.06□□□□□ -0.48
USP53-208ENST00000514305 FAM229BQ4G0N7 80 aa12.06□□□□□ -0.48
USP53-208ENST00000514305 SPRR4Q96PI1 79 aa12.06□□□□□ -0.48
USP53-208ENST00000514305 hADV29S1A0JD25 119 aa12.05□□□□□ -0.48
USP53-208ENST00000514305 BATFQ16520 125 aa12.05□□□□□ -0.48
USP53-208ENST00000514305 LINC00575Q6W349 94 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms