RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 IGLV3-1P01715 115 aa3.2□□□□□ -1.9
NUP54-210ENST00000510884 TFF1P04155 84 aa3.2□□□□□ -1.9
NUP54-210ENST00000510884 ERHP84090 104 aaKnown RBP3.2□□□□□ -1.9
NUP54-210ENST00000510884 ADM2Q7Z4H4 148 aa3.2□□□□□ -1.9
NUP54-210ENST00000510884 MIR7-3HGQ8N6C7 128 aa3.2□□□□□ -1.9
NUP54-210ENST00000510884 TNRC6BQ9UPQ9 1833 aaKnown RBP3.19□□□□□ -1.9
NUP54-210ENST00000510884 MYO7BQ6PIF6 2116 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 IGHV1-18A0A0C4DH31 117 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 H3BSH0 61 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 PANO1I0J062 215 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 CCL22O00626 93 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 HAMPP81172 84 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 DEFB103AP81534 67 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 CSAG1Q6PB30 78 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 Q8NAQ8 132 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 ZNF625Q96I27 306 aaPredicted RBP3.19□□□□□ -1.9
NUP54-210ENST00000510884 C20orf166-AS1Q96NR2 134 aa3.19□□□□□ -1.9
NUP54-210ENST00000510884 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.18□□□□□ -1.9
NUP54-210ENST00000510884 A0A1B0GVX0 72 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 A0A1W2PNM2 257 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 LRCOL1A6NCL2 159 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 UQCR11O14957 56 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 IGLV1-47P01700 117 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 LINC00483Q53H64 154 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 GAFA1Q96PS6 74 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 COL6A6A6NMZ7 2263 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 COL6A5A8TX70 2615 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 ACACAQ13085 2346 aa3.18□□□□□ -1.9
NUP54-210ENST00000510884 SPTBP11277 2137 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 APCP25054 2843 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 AKAP9Q99996 3911 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 ETDCA0A1B0GVM5 59 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 CLPSL1A2RUU4 121 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 C17orf98A8MV24 154 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 ODF3BA8MYP8 253 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 NDUFA4O00483 81 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 NDUFA1O15239 70 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 KRTAP5-8O75690 187 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 IGKV1-17P01599 117 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 Q8TAT8 98 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 ZNRD1Q9P1U0 126 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 MUC4Q99102 2169 aa3.17□□□□□ -1.9
NUP54-210ENST00000510884 MDC1Q14676 2089 aaKnown RBP3.16□□□□□ -1.9
NUP54-210ENST00000510884 HCP5Q6MZN7 132 aa3.16□□□□□ -1.9
NUP54-210ENST00000510884 LINC00308Q8TCZ7 52 aa3.16□□□□□ -1.9
NUP54-210ENST00000510884 INTS1Q8N201 2190 aaKnown RBP3.16□□□□□ -1.9
NUP54-210ENST00000510884 IGHV3-64A0A075B6Q5 118 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 NUPR2A6NF83 97 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 NCR3O14931 201 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 CCL18P55774 89 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 KRTAP25-1Q3LHN0 102 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 TTTY12Q9BZ98 90 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 KCNQ1DNQ9H478 68 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 TLN2Q9Y4G6 2542 aa3.15□□□□□ -1.91
NUP54-210ENST00000510884 AHCTF1Q8WYP5 2266 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 TGP01266 2768 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 RYR3Q15413 4870 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 SPTBN1Q01082 2364 aaKnown RBP3.14□□□□□ -1.91
NUP54-210ENST00000510884 TRGV2A0A075B6R0 118 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 IGKV1D-37A0A075B6S9 117 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 IGHV3-53P01767 116 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 NTM-AS1Q6ZSK4 140 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 C15orf56Q8N910 161 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 DEFB124Q8NES8 71 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 CIRBP-AS1Q8TBR5 109 aa3.14□□□□□ -1.91
NUP54-210ENST00000510884 KMT2CQ8NEZ4 4911 aaKnown RBP3.14□□□□□ -1.91
NUP54-210ENST00000510884 COL4A2P08572 1712 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 CEP192Q8TEP8 1941 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 MED13Q9UHV7 2174 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 IGKV1OR2-108A0A075B7D4 117 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 IGKV3D-11A0A0A0MRZ8 115 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 TRGV4A0A0C4DH28 118 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 ZNF861PO60384 105 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 MRPL33O75394 65 aaKnown RBP3.13□□□□□ -1.91
NUP54-210ENST00000510884 INSP01308 110 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 RPS27P42677 84 aaKnown RBP3.13□□□□□ -1.91
NUP54-210ENST00000510884 DEFB113Q30KQ7 82 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 DEFB112Q30KQ8 113 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 Q9Y3F1 56 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 CABIN1Q9Y6J0 2220 aa3.13□□□□□ -1.91
NUP54-210ENST00000510884 CUBNO60494 3623 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 NSD1Q96L73 2696 aaPredicted RBP3.12□□□□□ -1.91
NUP54-210ENST00000510884 URB1O60287 2271 aaKnown RBP3.12□□□□□ -1.91
NUP54-210ENST00000510884 TLX1NBP0CAT3 122 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 KRTAP10-10P60014 251 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 PRCDQ00LT1 54 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 COX17Q14061 63 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 PIGYQ3MUY2 71 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 KRTAP26-1Q6PEX3 210 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 SPATA8Q6RVD6 105 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 C4orf3Q8WVX3 66 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 UBR4Q5T4S7 5183 aa3.12□□□□□ -1.91
NUP54-210ENST00000510884 NBASA2RRP1 2371 aa3.11□□□□□ -1.91
NUP54-210ENST00000510884 ARFGEF3Q5TH69 2177 aa3.11□□□□□ -1.91
NUP54-210ENST00000510884 IGKV2-29A2NJV5 120 aaPredicted RBP3.11□□□□□ -1.91
NUP54-210ENST00000510884 A8MUU9 505 aa3.11□□□□□ -1.91
NUP54-210ENST00000510884 IGKV4-1P06312 121 aa3.11□□□□□ -1.91
NUP54-210ENST00000510884 CCL3L1P16619 93 aa3.11□□□□□ -1.91
NUP54-210ENST00000510884 COA5Q86WW8 74 aa3.11□□□□□ -1.91
NUP54-210ENST00000510884 CSPG4Q6UVK1 2322 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms