RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 REG3GQ6UW15 175 aa11.14□□□□□ -0.63
SQSTM1-209ENST00000504627 LINC00337Q8N6G1 96 aa11.14□□□□□ -0.63
SQSTM1-209ENST00000504627 LINC01600Q96MT4 127 aa11.14□□□□□ -0.63
SQSTM1-209ENST00000504627 PRO1854Q9UHT4 67 aa11.14□□□□□ -0.63
SQSTM1-209ENST00000504627 UBR4Q5T4S7 5183 aa11.13□□□□□ -0.63
SQSTM1-209ENST00000504627 NCR3O14931 201 aa11.13□□□□□ -0.63
SQSTM1-209ENST00000504627 RPL13AP40429 203 aaKnown RBP11.12□□□□□ -0.63
SQSTM1-209ENST00000504627 NKAPP1Q8N9T2 125 aa11.12□□□□□ -0.63
SQSTM1-209ENST00000504627 TNXBP22105 4242 aa11.11□□□□□ -0.63
SQSTM1-209ENST00000504627 FAM168BA1KXE4 195 aa11.1□□□□□ -0.63
SQSTM1-209ENST00000504627 M0R378 163 aa11.1□□□□□ -0.63
SQSTM1-209ENST00000504627 FAM19A5Q7Z5A7 132 aaPredicted RBP11.1□□□□□ -0.63
SQSTM1-209ENST00000504627 PHF5AQ7RTV0 110 aaKnown RBP11.09□□□□□ -0.63
SQSTM1-209ENST00000504627 TMEM126AQ9H061 195 aa11.09□□□□□ -0.63
SQSTM1-209ENST00000504627 TAX1BP3O14907 124 aa11.08□□□□□ -0.64
SQSTM1-209ENST00000504627 S100A7L2Q5SY68 101 aa11.08□□□□□ -0.64
SQSTM1-209ENST00000504627 KRTAP7-1Q8IUC3 87 aa11.08□□□□□ -0.64
SQSTM1-209ENST00000504627 PSORS1C2Q9UIG4 136 aa11.08□□□□□ -0.64
SQSTM1-209ENST00000504627 TSPAN13O95857 204 aa11.07□□□□□ -0.64
SQSTM1-209ENST00000504627 IGLV6-57P01721 117 aa11.07□□□□□ -0.64
SQSTM1-209ENST00000504627 Q1RN00 199 aa11.07□□□□□ -0.64
SQSTM1-209ENST00000504627 OR13C6PQ8NH95 151 aa11.07□□□□□ -0.64
SQSTM1-209ENST00000504627 CBY1Q9Y3M2 126 aa11.07□□□□□ -0.64
SQSTM1-209ENST00000504627 M0QXV9 152 aa11.06□□□□□ -0.64
SQSTM1-209ENST00000504627 C1orf137Q5JT78 98 aa11.06□□□□□ -0.64
SQSTM1-209ENST00000504627 MRPL55Q7Z7F7 128 aaKnown RBP11.06□□□□□ -0.64
SQSTM1-209ENST00000504627 C22orf24Q9Y442 160 aa11.06□□□□□ -0.64
SQSTM1-209ENST00000504627 TRBV10-3A0A0K0K1G6 114 aa11.04□□□□□ -0.64
SQSTM1-209ENST00000504627 C9orf118A6NHY6 69 aa11.04□□□□□ -0.64
SQSTM1-209ENST00000504627 H7C2G1 150 aa11.04□□□□□ -0.64
SQSTM1-209ENST00000504627 RPL28P46779 137 aaKnown RBP11.02□□□□□ -0.65
SQSTM1-209ENST00000504627 KRTAP10-8P60410 259 aa11.02□□□□□ -0.65
SQSTM1-209ENST00000504627 TRAV23DV6A0A075B6W5 121 aa11.01□□□□□ -0.65
SQSTM1-209ENST00000504627 SMIM11BQ8TCY0 68 aa11.01□□□□□ -0.65
SQSTM1-209ENST00000504627 GAGE10A6NGK3 116 aa11□□□□□ -0.65
SQSTM1-209ENST00000504627 H3BUT2 72 aa11□□□□□ -0.65
SQSTM1-209ENST00000504627 LYRM7Q5U5X0 104 aa11□□□□□ -0.65
SQSTM1-209ENST00000504627 LINC00167Q96N53 147 aa11□□□□□ -0.65
SQSTM1-209ENST00000504627 PRYO14603 147 aa10.99□□□□□ -0.65
SQSTM1-209ENST00000504627 UBE2BP63146 152 aa10.99□□□□□ -0.65
SQSTM1-209ENST00000504627 KCNQ1DNQ9H478 68 aa10.99□□□□□ -0.65
SQSTM1-209ENST00000504627 IGLV1-50A0A075B6I6 118 aa10.98□□□□□ -0.65
SQSTM1-209ENST00000504627 TRIAP1O43715 76 aa10.98□□□□□ -0.65
SQSTM1-209ENST00000504627 IGLV7-43P04211 117 aa10.98□□□□□ -0.65
SQSTM1-209ENST00000504627 PSMB2P49721 201 aa10.98□□□□□ -0.65
SQSTM1-209ENST00000504627 NAA38Q9BRA0 125 aaKnown RBP10.98□□□□□ -0.65
SQSTM1-209ENST00000504627 A0A1W2PPM0 123 aa10.97□□□□□ -0.65
SQSTM1-209ENST00000504627 COX6CP09669 75 aa10.96□□□□□ -0.65
SQSTM1-209ENST00000504627 DIRC1Q969H9 104 aa10.96□□□□□ -0.65
SQSTM1-209ENST00000504627 RPL37AP8A6NKH3 93 aa10.95□□□□□ -0.66
SQSTM1-209ENST00000504627 ZNF73O43830 326 aaPredicted RBP10.95□□□□□ -0.66
SQSTM1-209ENST00000504627 FABP2P12104 132 aa10.95□□□□□ -0.66
SQSTM1-209ENST00000504627 KRTAP11-1Q8IUC1 163 aa10.95□□□□□ -0.66
SQSTM1-209ENST00000504627 C6orf99Q4VX62 202 aa10.94□□□□□ -0.66
SQSTM1-209ENST00000504627 TRBV7-6A0A0J9YX20 115 aa10.93□□□□□ -0.66
SQSTM1-209ENST00000504627 SPRR1AP35321 89 aa10.93□□□□□ -0.66
SQSTM1-209ENST00000504627 LRP2P98164 4655 aa10.92□□□□□ -0.66
SQSTM1-209ENST00000504627 H0Y9J4 135 aa10.91□□□□□ -0.66
SQSTM1-209ENST00000504627 H0YGX0 51 aa10.91□□□□□ -0.66
SQSTM1-209ENST00000504627 SCGB1C2P0DMR2 95 aa10.91□□□□□ -0.66
SQSTM1-209ENST00000504627 VAMP3Q15836 100 aa10.91□□□□□ -0.66
SQSTM1-209ENST00000504627 TRBV20-1A0A075B6N2 111 aa10.89□□□□□ -0.67
SQSTM1-209ENST00000504627 KRTAP4-16G5E9R7 235 aaPredicted RBP10.88□□□□□ -0.67
SQSTM1-209ENST00000504627 ELOF1P60002 83 aaKnown RBP10.88□□□□□ -0.67
SQSTM1-209ENST00000504627 PRR26Q8N8Z3 221 aa10.88□□□□□ -0.67
SQSTM1-209ENST00000504627 SPCS1Q9Y6A9 102 aa10.88□□□□□ -0.67
SQSTM1-209ENST00000504627 ETDCA0A1B0GVM5 59 aa10.87□□□□□ -0.67
SQSTM1-209ENST00000504627 COX7BP24311 80 aa10.87□□□□□ -0.67
SQSTM1-209ENST00000504627 A0A1B0GV90 55 aa10.86□□□□□ -0.67
SQSTM1-209ENST00000504627 K7EP34 96 aa10.86□□□□□ -0.67
SQSTM1-209ENST00000504627 LST1O00453 97 aa10.85□□□□□ -0.67
SQSTM1-209ENST00000504627 TCL1BO95988 128 aa10.85□□□□□ -0.67
SQSTM1-209ENST00000504627 ATXN8Q156A1 80 aa10.85□□□□□ -0.67
SQSTM1-209ENST00000504627 Q6ZRX8 168 aa10.85□□□□□ -0.67
SQSTM1-209ENST00000504627 CLEC2BQ92478 149 aa10.85□□□□□ -0.67
SQSTM1-209ENST00000504627 A0A1B0GX51 115 aa10.84□□□□□ -0.67
SQSTM1-209ENST00000504627 GTF2H5Q6ZYL4 71 aa10.84□□□□□ -0.67
SQSTM1-209ENST00000504627 B5MCH6 92 aa10.83□□□□□ -0.68
SQSTM1-209ENST00000504627 BCE1O60756 84 aa10.82□□□□□ -0.68
SQSTM1-209ENST00000504627 TRACP01848 142 aa10.82□□□□□ -0.68
SQSTM1-209ENST00000504627 LINC00575Q6W349 94 aa10.82□□□□□ -0.68
SQSTM1-209ENST00000504627 FAM218AQ96MZ4 157 aa10.82□□□□□ -0.68
SQSTM1-209ENST00000504627 RNF213Q63HN8 5207 aa10.81□□□□□ -0.68
SQSTM1-209ENST00000504627 SLC25A20O43772 301 aa10.81□□□□□ -0.68
SQSTM1-209ENST00000504627 ZNF861PO60384 105 aa10.81□□□□□ -0.68
SQSTM1-209ENST00000504627 SNCGO76070 127 aa10.81□□□□□ -0.68
SQSTM1-209ENST00000504627 FAM19A1Q7Z5A9 133 aa10.8□□□□□ -0.68
SQSTM1-209ENST00000504627 KRTAP1-4P0C5Y4 121 aa10.79□□□□□ -0.68
SQSTM1-209ENST00000504627 DHRS4-AS1Q9P1J3 65 aa10.79□□□□□ -0.68
SQSTM1-209ENST00000504627 DNAL4O96015 105 aa10.78□□□□□ -0.68
SQSTM1-209ENST00000504627 hADV29S1A0JD25 119 aa10.77□□□□□ -0.69
SQSTM1-209ENST00000504627 UBE2AP49459 152 aa10.77□□□□□ -0.69
SQSTM1-209ENST00000504627 PRLHP81277 87 aa10.77□□□□□ -0.69
SQSTM1-209ENST00000504627 H3BMG7 143 aa10.76□□□□□ -0.69
SQSTM1-209ENST00000504627 KRTAP13-1Q8IUC0 172 aa10.76□□□□□ -0.69
SQSTM1-209ENST00000504627 Q9BRP9 147 aa10.76□□□□□ -0.69
SQSTM1-209ENST00000504627 UBE2V1Q13404 147 aa10.74□□□□□ -0.69
SQSTM1-209ENST00000504627 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.73□□□□□ -0.69
SQSTM1-209ENST00000504627 SMCR5Q8TEV8 140 aa10.73□□□□□ -0.69
SQSTM1-209ENST00000504627 C9JAW5 83 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 180.7 ms