RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 HIVEP2P31629 2446 aa7.69□□□□□ -1.18
HDAC4-210ENST00000493582 Q8N377 158 aa7.69□□□□□ -1.18
HDAC4-210ENST00000493582 CAMK2N2Q96S95 79 aa7.69□□□□□ -1.18
HDAC4-210ENST00000493582 LCE6AA0A183 80 aa7.69□□□□□ -1.18
HDAC4-210ENST00000493582 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.68□□□□□ -1.18
HDAC4-210ENST00000493582 ITPR3Q14573 2671 aa7.68□□□□□ -1.18
HDAC4-210ENST00000493582 KRTAP10-9P60411 292 aa7.68□□□□□ -1.18
HDAC4-210ENST00000493582 ZCCHC13Q8WW36 166 aaKnown RBP7.68□□□□□ -1.18
HDAC4-210ENST00000493582 A8MUN3 132 aa7.67□□□□□ -1.18
HDAC4-210ENST00000493582 ST20-AS1Q8NBB2 130 aa7.67□□□□□ -1.18
HDAC4-210ENST00000493582 PRR34Q9NV39 138 aa7.67□□□□□ -1.18
HDAC4-210ENST00000493582 ACANP16112 2415 aa7.67□□□□□ -1.18
HDAC4-210ENST00000493582 A0A1W2PNM2 257 aa7.67□□□□□ -1.18
HDAC4-210ENST00000493582 ETDCA0A1B0GVM5 59 aa7.65□□□□□ -1.18
HDAC4-210ENST00000493582 K7EQZ3 153 aa7.65□□□□□ -1.18
HDAC4-210ENST00000493582 DEFB135Q30KP9 77 aa7.65□□□□□ -1.18
HDAC4-210ENST00000493582 FLNAP21333 2647 aaKnown RBP7.65□□□□□ -1.18
HDAC4-210ENST00000493582 VWFP04275 2813 aa7.65□□□□□ -1.18
HDAC4-210ENST00000493582 IGLV5-48A0A075B6I7 105 aa7.65□□□□□ -1.18
HDAC4-210ENST00000493582 DSCR10P59022 87 aa7.65□□□□□ -1.18
HDAC4-210ENST00000493582 UNC79Q9P2D8 2635 aa7.65□□□□□ -1.19
HDAC4-210ENST00000493582 LELP1Q5T871 98 aa7.65□□□□□ -1.19
HDAC4-210ENST00000493582 LYRM9A8MSI8 78 aa7.64□□□□□ -1.19
HDAC4-210ENST00000493582 PSCAO43653 123 aa7.64□□□□□ -1.19
HDAC4-210ENST00000493582 F8P00451 2351 aa7.63□□□□□ -1.19
HDAC4-210ENST00000493582 EGFEM1PQ0D2K5 195 aa7.63□□□□□ -1.19
HDAC4-210ENST00000493582 SYCNQ0VAF6 134 aa7.62□□□□□ -1.19
HDAC4-210ENST00000493582 DEFB116Q30KQ4 102 aa7.62□□□□□ -1.19
HDAC4-210ENST00000493582 C1orf137Q5JT78 98 aa7.62□□□□□ -1.19
HDAC4-210ENST00000493582 CYP4F30PQ9H0H9 118 aa7.61□□□□□ -1.19
HDAC4-210ENST00000493582 SERTAD4-AS1Q5TG53 156 aa7.59□□□□□ -1.19
HDAC4-210ENST00000493582 Q5VV11 94 aa7.59□□□□□ -1.19
HDAC4-210ENST00000493582 Q8NBF4 154 aa7.59□□□□□ -1.19
HDAC4-210ENST00000493582 RPL37AP8A6NKH3 93 aa7.59□□□□□ -1.2
HDAC4-210ENST00000493582 A0A0G2JQZ4 141 aa7.58□□□□□ -1.2
HDAC4-210ENST00000493582 A0A1W2PNN7 141 aa7.58□□□□□ -1.2
HDAC4-210ENST00000493582 DEFB113Q30KQ7 82 aa7.58□□□□□ -1.2
HDAC4-210ENST00000493582 C7orf33Q8WU49 177 aa7.58□□□□□ -1.2
HDAC4-210ENST00000493582 KCNQ1DNQ9H478 68 aa7.58□□□□□ -1.2
HDAC4-210ENST00000493582 C15orf56Q8N910 161 aa7.58□□□□□ -1.2
HDAC4-210ENST00000493582 NKAPP1Q8N9T2 125 aa7.58□□□□□ -1.2
HDAC4-210ENST00000493582 HCG22E2RYF7 251 aa7.57□□□□□ -1.2
HDAC4-210ENST00000493582 WFDC10BQ8IUB3 73 aa7.57□□□□□ -1.2
HDAC4-210ENST00000493582 Q9BRP9 147 aa7.57□□□□□ -1.2
HDAC4-210ENST00000493582 RETNQ9HD89 108 aa7.57□□□□□ -1.2
HDAC4-210ENST00000493582 FLNBO75369 2602 aaKnown RBP7.57□□□□□ -1.2
HDAC4-210ENST00000493582 WFDC13Q8IUB5 93 aa7.57□□□□□ -1.2
HDAC4-210ENST00000493582 CD164Q04900 197 aa7.56□□□□□ -1.2
HDAC4-210ENST00000493582 PKD1L1Q8TDX9 2849 aa7.56□□□□□ -1.2
HDAC4-210ENST00000493582 CHKB-CPT1BH3BT56 60 aa7.56□□□□□ -1.2
HDAC4-210ENST00000493582 TNP2Q05952 138 aa7.56□□□□□ -1.2
HDAC4-210ENST00000493582 HELZ2Q9BYK8 2649 aaKnown RBP7.55□□□□□ -1.2
HDAC4-210ENST00000493582 KRTAP26-1Q6PEX3 210 aa7.55□□□□□ -1.2
HDAC4-210ENST00000493582 LINC00208Q96KT6 92 aa7.55□□□□□ -1.2
HDAC4-210ENST00000493582 HIVEP1P15822 2718 aa7.55□□□□□ -1.2
HDAC4-210ENST00000493582 A0A1B0GW54 56 aa7.55□□□□□ -1.2
HDAC4-210ENST00000493582 SPRR4Q96PI1 79 aa7.55□□□□□ -1.2
HDAC4-210ENST00000493582 B9D2Q9BPU9 175 aa7.55□□□□□ -1.2
HDAC4-210ENST00000493582 HECTD1Q9ULT8 2610 aa7.54□□□□□ -1.2
HDAC4-210ENST00000493582 Q6ZRX8 168 aa7.54□□□□□ -1.2
HDAC4-210ENST00000493582 SPTSSBQ8NFR3 76 aa7.54□□□□□ -1.2
HDAC4-210ENST00000493582 C16orf90A8MZG2 172 aa7.53□□□□□ -1.2
HDAC4-210ENST00000493582 NDUFB1O75438 58 aa7.53□□□□□ -1.2
HDAC4-210ENST00000493582 Q8NAQ8 132 aa7.53□□□□□ -1.2
HDAC4-210ENST00000493582 ANK3Q12955 4377 aaKnown RBP7.53□□□□□ -1.2
HDAC4-210ENST00000493582 SPART-AS1P0CW21 52 aa7.53□□□□□ -1.2
HDAC4-210ENST00000493582 KRTAP1-3Q8IUG1 177 aa7.53□□□□□ -1.2
HDAC4-210ENST00000493582 DHRS4-AS1Q9P1J3 65 aa7.53□□□□□ -1.2
HDAC4-210ENST00000493582 MP68P56378 58 aa7.52□□□□□ -1.21
HDAC4-210ENST00000493582 OXLD1Q5BKU9 147 aa7.52□□□□□ -1.21
HDAC4-210ENST00000493582 Q8N9P0 234 aaPredicted RBP7.52□□□□□ -1.21
HDAC4-210ENST00000493582 FAM168BA1KXE4 195 aa7.52□□□□□ -1.21
HDAC4-210ENST00000493582 UBE2BP63146 152 aa7.52□□□□□ -1.21
HDAC4-210ENST00000493582 PRR15LQ9BU68 103 aa7.51□□□□□ -1.21
HDAC4-210ENST00000493582 C4orf48Q5BLP8 95 aa7.51□□□□□ -1.21
HDAC4-210ENST00000493582 LINC00588Q9Y4M8 146 aa7.51□□□□□ -1.21
HDAC4-210ENST00000493582 KRTAP4-16G5E9R7 235 aaPredicted RBP7.5□□□□□ -1.21
HDAC4-210ENST00000493582 KRTAP10-3P60369 221 aa7.5□□□□□ -1.21
HDAC4-210ENST00000493582 RPL37AP61513 92 aaKnown RBP7.49□□□□□ -1.21
HDAC4-210ENST00000493582 OTOGQ6ZRI0 2925 aa7.49□□□□□ -1.21
HDAC4-210ENST00000493582 IGKV2D-24A0A075B6R9 120 aa7.49□□□□□ -1.21
HDAC4-210ENST00000493582 UBE2AP49459 152 aa7.49□□□□□ -1.21
HDAC4-210ENST00000493582 MRPL55Q7Z7F7 128 aaKnown RBP7.49□□□□□ -1.21
HDAC4-210ENST00000493582 ITPR2Q14571 2701 aa7.48□□□□□ -1.21
HDAC4-210ENST00000493582 LCA10Q71F78 164 aa7.48□□□□□ -1.21
HDAC4-210ENST00000493582 BAHCC1Q9P281 2608 aa7.48□□□□□ -1.21
HDAC4-210ENST00000493582 KTN1-AS1Q86SY8 53 aa7.47□□□□□ -1.21
HDAC4-210ENST00000493582 LINC00476Q8WZB0 136 aa7.47□□□□□ -1.21
HDAC4-210ENST00000493582 RBM12B-AS1Q9P1G2 102 aa7.47□□□□□ -1.21
HDAC4-210ENST00000493582 APOC4P55056 127 aa7.47□□□□□ -1.21
HDAC4-210ENST00000493582 LIMD2Q9BT23 127 aa7.47□□□□□ -1.21
HDAC4-210ENST00000493582 IGLV1-50A0A075B6I6 118 aa7.47□□□□□ -1.21
HDAC4-210ENST00000493582 TEP1Q99973 2627 aaKnown RBP7.45□□□□□ -1.22
HDAC4-210ENST00000493582 H0Y9P7 68 aa7.45□□□□□ -1.22
HDAC4-210ENST00000493582 A0A087WSZ3 146 aa7.45□□□□□ -1.22
HDAC4-210ENST00000493582 PDZD2O15018 2839 aa7.45□□□□□ -1.22
HDAC4-210ENST00000493582 A6NED7 52 aa7.45□□□□□ -1.22
HDAC4-210ENST00000493582 IGFL1Q6UW32 110 aa7.44□□□□□ -1.22
HDAC4-210ENST00000493582 SPRR1AP35321 89 aa7.44□□□□□ -1.22
HDAC4-210ENST00000493582 KRTAP7-1Q8IUC3 87 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms