RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PRR15LQ9BU68 103 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 USF3Q68DE3 2245 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 CRYBG1Q9Y4K1 1723 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 ANKRD50Q9ULJ7 1429 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 SYCP2Q9BX26 1530 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 TRAV1-2A0A0B4J238 106 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 TRBV10-3A0A0K0K1G6 114 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 A0A1B0GV90 55 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 FAM25AB3EWG3 89 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 FAM25CB3EWG5 89 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 FAM25GB3EWG6 89 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 MCRIP1C9JLW8 97 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 APOC4-APOC2K7ER74 178 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 SPINK6Q6UWN8 80 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 ZNF818PQ6ZRF7 136 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 SNRNP25Q9BV90 132 aaKnown RBP0.14□□□□□ -2.39
CPSF3-205ENST00000489629 RERGLQ9H628 205 aa0.14□□□□□ -2.39
CPSF3-205ENST00000489629 DAPK1P53355 1430 aa0.13□□□□□ -2.39
CPSF3-205ENST00000489629 NSD3Q9BZ95 1437 aa0.13□□□□□ -2.39
CPSF3-205ENST00000489629 PI4KAP42356 2102 aa0.13□□□□□ -2.39
CPSF3-205ENST00000489629 TMEM14DPA8MWL7 114 aa0.13□□□□□ -2.39
CPSF3-205ENST00000489629 SIX6O95475 246 aa0.13□□□□□ -2.39
CPSF3-205ENST00000489629 IFNA17P01571 189 aa0.13□□□□□ -2.39
CPSF3-205ENST00000489629 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.13□□□□□ -2.39
CPSF3-205ENST00000489629 SERP1Q9Y6X1 66 aa0.13□□□□□ -2.39
CPSF3-205ENST00000489629 ROCK2O75116 1388 aaKnown RBP0.12□□□□□ -2.39
CPSF3-205ENST00000489629 TRAV13-2A0A0B4J235 113 aa0.12□□□□□ -2.39
CPSF3-205ENST00000489629 Q6AWC8 147 aa0.12□□□□□ -2.39
CPSF3-205ENST00000489629 OOSP1A8MZH6 123 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 APODP05090 189 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 CCL18P55774 89 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 BTG2P78543 158 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 MT1HP80294 61 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 KRTAP20-2Q3LI61 65 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 C10orf128Q5T292 105 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 SSBP3-AS1Q7Z2R9 100 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 TSLPQ969D9 159 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 SCN3BQ9NY72 215 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 LINC00474Q9P2X8 69 aa0.11□□□□□ -2.39
CPSF3-205ENST00000489629 CPSF1Q10570 1443 aaKnown RBP0.11□□□□□ -2.39
CPSF3-205ENST00000489629 ARFGEF2Q9Y6D5 1785 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 MIF4GDA9UHW6 222 aaKnown RBP0.1□□□□□ -2.39
CPSF3-205ENST00000489629 DLEU1O43261 78 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 PPP1R17O96001 155 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 GCHFRP30047 84 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 Q56UQ5 140 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 Q5VV11 94 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 RPL13AP3Q6NVV1 102 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 TTC9CQ8N5M4 171 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 NAA60Q9H7X0 242 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 TCHHQ07283 1943 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 DNAJC13O75165 2243 aa0.1□□□□□ -2.39
CPSF3-205ENST00000489629 RGPD2P0DJD1 1756 aa0.09□□□□□ -2.39
CPSF3-205ENST00000489629 ZNF815PA8K554 130 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 M0R135 149 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 FGF7P21781 194 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 COX6A2Q02221 97 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 CATR1Q13166 79 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 DEFB109BQ30KR1 87 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 BAGE3Q86Y29 109 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 DEFB104AQ8WTQ1 72 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 PP6455Q8WZ26 134 aa0.09□□□□□ -2.4
CPSF3-205ENST00000489629 MYO7BQ6PIF6 2116 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 LINC00587B1AMM8 73 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 AKAIN1P0CW23 69 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 SPAG11BQ08648 103 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 CFAP126Q5VTH2 177 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 SPAG11AQ6PDA7 123 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 KRTAP8-1Q8IUC2 63 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 UBE2DNLQ8IWF7 75 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 C1orf54Q8WWF1 131 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 COPS9Q8WXC6 57 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 SPANXDQ9BXN6 97 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 ANKRD36CQ5JPF3 1778 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 CCDC141Q6ZP82 1450 aa0.08□□□□□ -2.4
CPSF3-205ENST00000489629 EFCAB10A6NFE3 127 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 APOC2P02655 101 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 MT1HL1P0DM35 61 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 SARNPP82979 210 aaKnown RBP0.07□□□□□ -2.4
CPSF3-205ENST00000489629 Q5BKY6 102 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 C12orf73Q69YU5 71 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 AQP10Q96PS8 301 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 DPH3P1Q9H4G8 78 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 LINC00472Q9H8W2 130 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 SCP2D1Q9UJQ7 156 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 GCC2Q8IWJ2 1684 aa0.07□□□□□ -2.4
CPSF3-205ENST00000489629 ANKRD36BQ8N2N9 1353 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 IQGAP3Q86VI3 1631 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 TRBV7-3A0A075B6L6 115 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 STATHP02808 62 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 COX6B2Q6YFQ2 88 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 PPP3R2Q96LZ3 170 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 AMELXQ99217 191 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 NPVFQ9HCQ7 196 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 NDUFA4L2Q9NRX3 87 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 LENEPQ9Y5L5 61 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 R4GMQ9 66 aa0.06□□□□□ -2.4
CPSF3-205ENST00000489629 PDCD11Q14690 1871 aaKnown RBP0.05□□□□□ -2.4
CPSF3-205ENST00000489629 EDC4Q6P2E9 1401 aaKnown RBP0.05□□□□□ -2.4
CPSF3-205ENST00000489629 PPLO60437 1756 aa0.05□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms