RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 LINC01600Q96MT4 127 aa11.92□□□□□ -0.5
LIME1-205ENST00000480139 TRAV23DV6A0A075B6W5 121 aa11.91□□□□□ -0.5
LIME1-205ENST00000480139 PRLHP81277 87 aa11.91□□□□□ -0.5
LIME1-205ENST00000480139 DMBT1Q9UGM3 2413 aaPredicted RBP11.89□□□□□ -0.51
LIME1-205ENST00000480139 ETDCA0A1B0GVM5 59 aa11.89□□□□□ -0.51
LIME1-205ENST00000480139 J3QL48 77 aa11.89□□□□□ -0.51
LIME1-205ENST00000480139 OR13C6PQ8NH95 151 aa11.89□□□□□ -0.51
LIME1-205ENST00000480139 C2orf91Q6ZV80 131 aa11.88□□□□□ -0.51
LIME1-205ENST00000480139 HIST1H4GQ99525 98 aa11.88□□□□□ -0.51
LIME1-205ENST00000480139 ZNF73O43830 326 aaPredicted RBP11.87□□□□□ -0.51
LIME1-205ENST00000480139 KRTAP1-4P0C5Y4 121 aa11.87□□□□□ -0.51
LIME1-205ENST00000480139 B5MCH6 92 aa11.86□□□□□ -0.51
LIME1-205ENST00000480139 TRAV13-2A0A0B4J235 113 aa11.85□□□□□ -0.51
LIME1-205ENST00000480139 A4D1N5 150 aa11.85□□□□□ -0.51
LIME1-205ENST00000480139 MT1HL1P0DM35 61 aa11.85□□□□□ -0.51
LIME1-205ENST00000480139 Q6ZRX8 168 aa11.84□□□□□ -0.51
LIME1-205ENST00000480139 A6NDN8 102 aa11.83□□□□□ -0.52
LIME1-205ENST00000480139 TAL2Q16559 108 aa11.83□□□□□ -0.52
LIME1-205ENST00000480139 HIGD2AQ9BW72 106 aa11.83□□□□□ -0.52
LIME1-205ENST00000480139 SMIM6P0DI80 62 aa11.82□□□□□ -0.52
LIME1-205ENST00000480139 HINT1P49773 126 aaPredicted RBP11.81□□□□□ -0.52
LIME1-205ENST00000480139 KRTAP10-8P60410 259 aa11.8□□□□□ -0.52
LIME1-205ENST00000480139 SMCR5Q8TEV8 140 aa11.8□□□□□ -0.52
LIME1-205ENST00000480139 UQCR10Q9UDW1 63 aa11.8□□□□□ -0.52
LIME1-205ENST00000480139 Q9BRP9 147 aa11.78□□□□□ -0.52
LIME1-205ENST00000480139 TRBV7-6A0A0J9YX20 115 aa11.77□□□□□ -0.53
LIME1-205ENST00000480139 LOC105371267A0A1B0GV96 52 aa11.77□□□□□ -0.53
LIME1-205ENST00000480139 C6orf99Q4VX62 202 aa11.77□□□□□ -0.53
LIME1-205ENST00000480139 ZNF706Q9Y5V0 76 aaPredicted RBP11.77□□□□□ -0.53
LIME1-205ENST00000480139 RPL13AP40429 203 aaKnown RBP11.76□□□□□ -0.53
LIME1-205ENST00000480139 ELOF1P60002 83 aaKnown RBP11.76□□□□□ -0.53
LIME1-205ENST00000480139 FAM229BQ4G0N7 80 aa11.76□□□□□ -0.53
LIME1-205ENST00000480139 CEND1Q8N111 149 aa11.76□□□□□ -0.53
LIME1-205ENST00000480139 PRR26Q8N8Z3 221 aa11.76□□□□□ -0.53
LIME1-205ENST00000480139 SPRR4Q96PI1 79 aa11.75□□□□□ -0.53
LIME1-205ENST00000480139 SMIM11BQ8TCY0 68 aa11.74□□□□□ -0.53
LIME1-205ENST00000480139 TNXBP22105 4242 aa11.74□□□□□ -0.53
LIME1-205ENST00000480139 COX7BP24311 80 aa11.73□□□□□ -0.53
LIME1-205ENST00000480139 HSD52Q0P140 79 aa11.73□□□□□ -0.53
LIME1-205ENST00000480139 C12orf57Q99622 126 aa11.73□□□□□ -0.53
LIME1-205ENST00000480139 A0A0B4J2C4 111 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 TMEM238LA0A1B0GVL6 79 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 A0A1B0GWB2 263 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 A6NJY4 79 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 CFC1BP0CG36 223 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 CFC1P0CG37 223 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 CRYGAP11844 174 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 DHRS4-AS1Q9P1J3 65 aa11.72□□□□□ -0.53
LIME1-205ENST00000480139 A0A087X002 238 aa11.71□□□□□ -0.53
LIME1-205ENST00000480139 ERC2-IT1O76042 136 aa11.71□□□□□ -0.53
LIME1-205ENST00000480139 RAB37Q96AX2 223 aa11.69□□□□□ -0.54
LIME1-205ENST00000480139 ANAPC11Q9NYG5 84 aa11.69□□□□□ -0.54
LIME1-205ENST00000480139 HERC1Q15751 4861 aa11.68□□□□□ -0.54
LIME1-205ENST00000480139 FXYD2P54710 66 aa11.68□□□□□ -0.54
LIME1-205ENST00000480139 LINC00483Q53H64 154 aa11.68□□□□□ -0.54
LIME1-205ENST00000480139 VAMP3Q15836 100 aa11.66□□□□□ -0.54
LIME1-205ENST00000480139 KRTAP13-2Q52LG2 175 aa11.65□□□□□ -0.54
LIME1-205ENST00000480139 PRO1933Q9H354 126 aa11.65□□□□□ -0.54
LIME1-205ENST00000480139 GAGE2AQ6NT46 116 aa11.63□□□□□ -0.55
LIME1-205ENST00000480139 TYMSOSQ8TAI1 123 aa11.63□□□□□ -0.55
LIME1-205ENST00000480139 NHP2Q9NX24 153 aaKnown RBP11.63□□□□□ -0.55
LIME1-205ENST00000480139 BVES-AS1Q5T3Y7 98 aa11.62□□□□□ -0.55
LIME1-205ENST00000480139 PRO1854Q9UHT4 67 aa11.62□□□□□ -0.55
LIME1-205ENST00000480139 ST20-AS1Q8NBB2 130 aa11.6□□□□□ -0.55
LIME1-205ENST00000480139 H7C2G1 150 aa11.59□□□□□ -0.55
LIME1-205ENST00000480139 SPRR1BP22528 89 aa11.59□□□□□ -0.55
LIME1-205ENST00000480139 TSTD3H0UI37 97 aa11.58□□□□□ -0.56
LIME1-205ENST00000480139 LINC00575Q6W349 94 aa11.58□□□□□ -0.56
LIME1-205ENST00000480139 SLC25A20O43772 301 aa11.57□□□□□ -0.56
LIME1-205ENST00000480139 C3orf22Q8N5N4 141 aa11.57□□□□□ -0.56
LIME1-205ENST00000480139 Q1RN00 199 aa11.55□□□□□ -0.56
LIME1-205ENST00000480139 IGLV5-48A0A075B6I7 105 aa11.54□□□□□ -0.56
LIME1-205ENST00000480139 hADV29S1A0JD25 119 aa11.53□□□□□ -0.56
LIME1-205ENST00000480139 H0YGX0 51 aa11.53□□□□□ -0.56
LIME1-205ENST00000480139 TEX49A0A1B0GTD5 131 aa11.52□□□□□ -0.57
LIME1-205ENST00000480139 K7ERJ3 54 aa11.52□□□□□ -0.57
LIME1-205ENST00000480139 M0R143 59 aa11.52□□□□□ -0.57
LIME1-205ENST00000480139 CTAG1AP78358 180 aa11.52□□□□□ -0.57
LIME1-205ENST00000480139 LINC01547P58512 204 aaPredicted RBP11.51□□□□□ -0.57
LIME1-205ENST00000480139 LINC00304Q8N9R0 145 aa11.51□□□□□ -0.57
LIME1-205ENST00000480139 IGLV9-49A0A0B4J1Y8 123 aa11.49□□□□□ -0.57
LIME1-205ENST00000480139 SSBP3-AS1Q7Z2R9 100 aa11.49□□□□□ -0.57
LIME1-205ENST00000480139 TRIAP1O43715 76 aa11.48□□□□□ -0.57
LIME1-205ENST00000480139 MOBPQ13875 183 aa11.48□□□□□ -0.57
LIME1-205ENST00000480139 DEFB105AQ8NG35 78 aa11.48□□□□□ -0.57
LIME1-205ENST00000480139 LAMTOR3Q9UHA4 124 aa11.48□□□□□ -0.57
LIME1-205ENST00000480139 TSPAN13O95857 204 aa11.47□□□□□ -0.57
LIME1-205ENST00000480139 SPAG11AQ6PDA7 123 aa11.47□□□□□ -0.57
LIME1-205ENST00000480139 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.47□□□□□ -0.57
LIME1-205ENST00000480139 Q6ZQY7 126 aa11.47□□□□□ -0.57
LIME1-205ENST00000480139 SNCGO76070 127 aa11.46□□□□□ -0.57
LIME1-205ENST00000480139 Q8NBF4 154 aa11.46□□□□□ -0.57
LIME1-205ENST00000480139 A0A1B0GX51 115 aa11.45□□□□□ -0.58
LIME1-205ENST00000480139 SMIM29Q86T20 159 aa11.45□□□□□ -0.58
LIME1-205ENST00000480139 Q8N377 158 aa11.45□□□□□ -0.58
LIME1-205ENST00000480139 C9orf153Q5TBE3 101 aa11.44□□□□□ -0.58
LIME1-205ENST00000480139 PSMB2P49721 201 aa11.43□□□□□ -0.58
LIME1-205ENST00000480139 PPDPFLQ8WWR9 84 aa11.43□□□□□ -0.58
LIME1-205ENST00000480139 FAM218AQ96MZ4 157 aa11.43□□□□□ -0.58
LIME1-205ENST00000480139 HMCN2Q8NDA2 5059 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms