RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 TRAV10A0A0B4J240 114 aa6.44□□□□□ -1.38
HDAC3-205ENST00000469550 CLPSL2Q6UWE3 100 aa6.44□□□□□ -1.38
HDAC3-205ENST00000469550 SMIM26A0A096LP01 95 aa6.44□□□□□ -1.38
HDAC3-205ENST00000469550 M0R2N4 97 aa6.44□□□□□ -1.38
HDAC3-205ENST00000469550 ATP5EP56381 51 aaPredicted RBP6.44□□□□□ -1.38
HDAC3-205ENST00000469550 REG3AQ06141 175 aa6.44□□□□□ -1.38
HDAC3-205ENST00000469550 C9orf116Q5BN46 136 aaPredicted RBP6.44□□□□□ -1.38
HDAC3-205ENST00000469550 TRBV7-4A0A0J9YYF1 115 aa6.43□□□□□ -1.38
HDAC3-205ENST00000469550 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.43□□□□□ -1.38
HDAC3-205ENST00000469550 LINC00476Q8WZB0 136 aa6.43□□□□□ -1.38
HDAC3-205ENST00000469550 Q6ZQY7 126 aa6.42□□□□□ -1.38
HDAC3-205ENST00000469550 GVQW2A0A096LPI5 108 aaPredicted RBP6.42□□□□□ -1.38
HDAC3-205ENST00000469550 TRBV7-6A0A0J9YX20 115 aa6.42□□□□□ -1.38
HDAC3-205ENST00000469550 ERC2-IT1O76042 136 aa6.42□□□□□ -1.38
HDAC3-205ENST00000469550 ANGP03950 147 aaKnown RBP6.41□□□□□ -1.38
HDAC3-205ENST00000469550 Q8N3U1 123 aa6.41□□□□□ -1.38
HDAC3-205ENST00000469550 PRO0628Q9UI54 55 aa6.41□□□□□ -1.38
HDAC3-205ENST00000469550 NUPR2A6NF83 97 aa6.4□□□□□ -1.38
HDAC3-205ENST00000469550 LYRM9A8MSI8 78 aa6.4□□□□□ -1.38
HDAC3-205ENST00000469550 SPAG11BQ08648 103 aa6.4□□□□□ -1.38
HDAC3-205ENST00000469550 UNQ6190/PRO20217Q6UXQ8 127 aa6.4□□□□□ -1.38
HDAC3-205ENST00000469550 DIRC1Q969H9 104 aa6.4□□□□□ -1.38
HDAC3-205ENST00000469550 RMI2Q96E14 147 aa6.4□□□□□ -1.38
HDAC3-205ENST00000469550 X6R8D5 127 aa6.4□□□□□ -1.38
HDAC3-205ENST00000469550 F8WEM9 126 aa6.4□□□□□ -1.39
HDAC3-205ENST00000469550 C10orf25Q5T742 122 aa6.4□□□□□ -1.39
HDAC3-205ENST00000469550 IGLV10-54A0A075B6I4 117 aa6.39□□□□□ -1.39
HDAC3-205ENST00000469550 APOC4P55056 127 aa6.39□□□□□ -1.39
HDAC3-205ENST00000469550 SNURFQ9Y675 71 aa6.39□□□□□ -1.39
HDAC3-205ENST00000469550 A0A096LPF7 62 aa6.38□□□□□ -1.39
HDAC3-205ENST00000469550 MIFP14174 115 aa6.38□□□□□ -1.39
HDAC3-205ENST00000469550 COX7BP24311 80 aa6.38□□□□□ -1.39
HDAC3-205ENST00000469550 ELOF1P60002 83 aaKnown RBP6.38□□□□□ -1.39
HDAC3-205ENST00000469550 FP248Q71RG6 208 aaPredicted RBP6.38□□□□□ -1.39
HDAC3-205ENST00000469550 ZNF73O43830 326 aaPredicted RBP6.37□□□□□ -1.39
HDAC3-205ENST00000469550 PRR34Q9NV39 138 aa6.37□□□□□ -1.39
HDAC3-205ENST00000469550 NREPQ16612 68 aa6.37□□□□□ -1.39
HDAC3-205ENST00000469550 LINC00336Q6ZUF6 198 aa6.37□□□□□ -1.39
HDAC3-205ENST00000469550 LY6G6CO95867 125 aa6.36□□□□□ -1.39
HDAC3-205ENST00000469550 DNAH10Q8IVF4 4471 aa6.36□□□□□ -1.39
HDAC3-205ENST00000469550 BPY2O14599 106 aa6.35□□□□□ -1.39
HDAC3-205ENST00000469550 DEFB135Q30KP9 77 aa6.35□□□□□ -1.39
HDAC3-205ENST00000469550 LELP1Q5T871 98 aa6.35□□□□□ -1.39
HDAC3-205ENST00000469550 TMEM254Q8TBM7 123 aa6.35□□□□□ -1.39
HDAC3-205ENST00000469550 CELA1Q9UNI1 258 aa6.35□□□□□ -1.39
HDAC3-205ENST00000469550 DNAH6Q9C0G6 4158 aa6.35□□□□□ -1.39
HDAC3-205ENST00000469550 C6orf48Q9UBA6 75 aa6.34□□□□□ -1.39
HDAC3-205ENST00000469550 VPS13DQ5THJ4 4388 aa6.33□□□□□ -1.4
HDAC3-205ENST00000469550 LINC00528Q8N1L1 170 aa6.33□□□□□ -1.4
HDAC3-205ENST00000469550 A0A0U1RQV1 116 aa6.32□□□□□ -1.4
HDAC3-205ENST00000469550 M0R378 163 aa6.32□□□□□ -1.4
HDAC3-205ENST00000469550 VPREB1P12018 145 aa6.32□□□□□ -1.4
HDAC3-205ENST00000469550 SCXQ7RTU7 201 aa6.32□□□□□ -1.4
HDAC3-205ENST00000469550 OCR1Q9BZK8 76 aa6.32□□□□□ -1.4
HDAC3-205ENST00000469550 HERC2O95714 4834 aa6.32□□□□□ -1.4
HDAC3-205ENST00000469550 IGKV4-1P06312 121 aa6.31□□□□□ -1.4
HDAC3-205ENST00000469550 A0A1B0GW54 56 aa6.31□□□□□ -1.4
HDAC3-205ENST00000469550 DAD1P61803 113 aa6.31□□□□□ -1.4
HDAC3-205ENST00000469550 XAGE1AQ9HD64 81 aa6.31□□□□□ -1.4
HDAC3-205ENST00000469550 KRTAP17-1Q9BYP8 105 aa6.3□□□□□ -1.4
HDAC3-205ENST00000469550 KLK12Q9UKR0 248 aa6.3□□□□□ -1.4
HDAC3-205ENST00000469550 FRAS1Q86XX4 4008 aa6.3□□□□□ -1.4
HDAC3-205ENST00000469550 KMT2AQ03164 3969 aa6.3□□□□□ -1.4
HDAC3-205ENST00000469550 PRYO14603 147 aa6.29□□□□□ -1.4
HDAC3-205ENST00000469550 LINC00474Q9P2X8 69 aa6.29□□□□□ -1.4
HDAC3-205ENST00000469550 C11orf45Q8TAV5 145 aa6.29□□□□□ -1.4
HDAC3-205ENST00000469550 HIGD2BQ4VC39 106 aa6.27□□□□□ -1.4
HDAC3-205ENST00000469550 CAMK2N2Q96S95 79 aa6.27□□□□□ -1.41
HDAC3-205ENST00000469550 HECTD4Q9Y4D8 3996 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 SPART-AS1P0CW21 52 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 FUSP35637 526 aaKnown RBP eCLIP6.26□□□□□ -1.41
HDAC3-205ENST00000469550 Q6ZTC4 211 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 Q8NAQ8 132 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 IGLV5-48A0A075B6I7 105 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 F8WDY8 70 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 DEFB4AO15263 64 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 ESRGQ1W209 222 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 C1orf43Q9BWL3 253 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 APLNQ9ULZ1 77 aa6.26□□□□□ -1.41
HDAC3-205ENST00000469550 Q8N9L7 120 aa6.25□□□□□ -1.41
HDAC3-205ENST00000469550 KRTAP26-1Q6PEX3 210 aa6.24□□□□□ -1.41
HDAC3-205ENST00000469550 KCNQ1DNQ9H478 68 aa6.24□□□□□ -1.41
HDAC3-205ENST00000469550 DNAH17Q9UFH2 4485 aa6.23□□□□□ -1.41
HDAC3-205ENST00000469550 FAM229BQ4G0N7 80 aa6.23□□□□□ -1.41
HDAC3-205ENST00000469550 Q6ZRU5 148 aa6.23□□□□□ -1.41
HDAC3-205ENST00000469550 Q8N377 158 aa6.22□□□□□ -1.41
HDAC3-205ENST00000469550 HIGD2AQ9BW72 106 aa6.22□□□□□ -1.41
HDAC3-205ENST00000469550 KIAA1109Q2LD37 5005 aa6.21□□□□□ -1.41
HDAC3-205ENST00000469550 H3BNG1 76 aa6.21□□□□□ -1.42
HDAC3-205ENST00000469550 C15orf56Q8N910 161 aa6.21□□□□□ -1.42
HDAC3-205ENST00000469550 BRK1Q8WUW1 75 aa6.21□□□□□ -1.42
HDAC3-205ENST00000469550 FAT2Q9NYQ8 4349 aa6.21□□□□□ -1.42
HDAC3-205ENST00000469550 HTN3P15516 51 aa6.2□□□□□ -1.42
HDAC3-205ENST00000469550 PCLOQ9Y6V0 5065 aa6.2□□□□□ -1.42
HDAC3-205ENST00000469550 DYNC1H1Q14204 4646 aaKnown RBP6.2□□□□□ -1.42
HDAC3-205ENST00000469550 A0A1B0GVY2 172 aa6.2□□□□□ -1.42
HDAC3-205ENST00000469550 DHRS4-AS1Q9P1J3 65 aa6.2□□□□□ -1.42
HDAC3-205ENST00000469550 hDV103S1A0JD37 113 aa6.19□□□□□ -1.42
HDAC3-205ENST00000469550 TNP2Q05952 138 aa6.19□□□□□ -1.42
HDAC3-205ENST00000469550 Q6ZRP5 223 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms