RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 NPC2P61916 151 aa11.74□□□□□ -0.53
COL9A3-207ENST00000467819 NDUFC2O95298 119 aa11.73□□□□□ -0.53
COL9A3-207ENST00000467819 LINC01547P58512 204 aaPredicted RBP11.73□□□□□ -0.53
COL9A3-207ENST00000467819 IGKCP01834 107 aa11.72□□□□□ -0.53
COL9A3-207ENST00000467819 JOSD1Q15040 202 aaPredicted RBP11.72□□□□□ -0.53
COL9A3-207ENST00000467819 HSPB8Q9UJY1 196 aa11.72□□□□□ -0.53
COL9A3-207ENST00000467819 SOSTDC1Q6X4U4 206 aa11.71□□□□□ -0.53
COL9A3-207ENST00000467819 EIF4EBP3O60516 100 aaPredicted RBP11.7□□□□□ -0.54
COL9A3-207ENST00000467819 ST20-AS1Q8NBB2 130 aa11.7□□□□□ -0.54
COL9A3-207ENST00000467819 ZNF73O43830 326 aaPredicted RBP11.69□□□□□ -0.54
COL9A3-207ENST00000467819 A0A0J9YXY3 114 aa11.67□□□□□ -0.54
COL9A3-207ENST00000467819 ADAMTSL4-AS1Q5T5F5 129 aa11.67□□□□□ -0.54
COL9A3-207ENST00000467819 XP32Q5T750 250 aa11.66□□□□□ -0.54
COL9A3-207ENST00000467819 E9PLD3 99 aa11.62□□□□□ -0.55
COL9A3-207ENST00000467819 HINT1P49773 126 aaPredicted RBP11.62□□□□□ -0.55
COL9A3-207ENST00000467819 OR13C6PQ8NH95 151 aa11.6□□□□□ -0.55
COL9A3-207ENST00000467819 CBY1Q9Y3M2 126 aa11.6□□□□□ -0.55
COL9A3-207ENST00000467819 C5orf52A6NGY3 159 aa11.59□□□□□ -0.55
COL9A3-207ENST00000467819 HRCT1Q6UXD1 115 aa11.59□□□□□ -0.55
COL9A3-207ENST00000467819 LINC00308Q8TCZ7 52 aa11.57□□□□□ -0.56
COL9A3-207ENST00000467819 SPANXCQ9NY87 97 aa11.57□□□□□ -0.56
COL9A3-207ENST00000467819 LITAFQ99732 161 aa11.56□□□□□ -0.56
COL9A3-207ENST00000467819 SPRR1BP22528 89 aa11.55□□□□□ -0.56
COL9A3-207ENST00000467819 LIMD2Q9BT23 127 aa11.55□□□□□ -0.56
COL9A3-207ENST00000467819 COLCA2A8K830 154 aa11.54□□□□□ -0.56
COL9A3-207ENST00000467819 SLC25A34Q6PIV7 304 aa11.54□□□□□ -0.56
COL9A3-207ENST00000467819 DHRS4-AS1Q9P1J3 65 aa11.54□□□□□ -0.56
COL9A3-207ENST00000467819 C9orf92A6NGG3 77 aa11.52□□□□□ -0.57
COL9A3-207ENST00000467819 SYS1-DBNDD2H3BUS1 97 aa11.52□□□□□ -0.57
COL9A3-207ENST00000467819 LAMTOR3Q9UHA4 124 aa11.52□□□□□ -0.57
COL9A3-207ENST00000467819 TIMM17BO60830 172 aa11.51□□□□□ -0.57
COL9A3-207ENST00000467819 LCE2DQ5TA82 110 aaPredicted RBP11.51□□□□□ -0.57
COL9A3-207ENST00000467819 SPANXDQ9BXN6 97 aa11.51□□□□□ -0.57
COL9A3-207ENST00000467819 LCE2CQ5TA81 110 aa11.5□□□□□ -0.57
COL9A3-207ENST00000467819 ZNF815PA8K554 130 aa11.49□□□□□ -0.57
COL9A3-207ENST00000467819 COX7BP24311 80 aa11.49□□□□□ -0.57
COL9A3-207ENST00000467819 PCOTHQ58A44 107 aa11.49□□□□□ -0.57
COL9A3-207ENST00000467819 ELOF1P60002 83 aaKnown RBP11.48□□□□□ -0.57
COL9A3-207ENST00000467819 Q1RN00 199 aa11.48□□□□□ -0.57
COL9A3-207ENST00000467819 C6orf99Q4VX62 202 aa11.48□□□□□ -0.57
COL9A3-207ENST00000467819 DEFB105AQ8NG35 78 aa11.48□□□□□ -0.57
COL9A3-207ENST00000467819 TTTY13Q9BZ97 58 aa11.48□□□□□ -0.57
COL9A3-207ENST00000467819 TAL2Q16559 108 aa11.47□□□□□ -0.57
COL9A3-207ENST00000467819 LINC01545Q5VT33 79 aa11.46□□□□□ -0.57
COL9A3-207ENST00000467819 SLC7A5P1Q8MH63 180 aa11.46□□□□□ -0.57
COL9A3-207ENST00000467819 IGLV8-61A0A075B6I0 122 aa11.45□□□□□ -0.58
COL9A3-207ENST00000467819 KRTAP19-2Q3LHN2 52 aa11.44□□□□□ -0.58
COL9A3-207ENST00000467819 LINC00518Q8N0U6 118 aa11.44□□□□□ -0.58
COL9A3-207ENST00000467819 H7C2G1 150 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BKO60814 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BJP06899 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BOP23527 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BBP33778 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BDP58876 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BCP62807 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST2H2BEQ16778 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.42□□□□□ -0.58
COL9A3-207ENST00000467819 PET117Q6UWS5 81 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BHQ93079 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BNQ99877 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 HIST1H2BMQ99879 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 PRO1933Q9H354 126 aa11.42□□□□□ -0.58
COL9A3-207ENST00000467819 TEX49A0A1B0GTD5 131 aa11.41□□□□□ -0.58
COL9A3-207ENST00000467819 CD164Q04900 197 aa11.41□□□□□ -0.58
COL9A3-207ENST00000467819 MT1HP80294 61 aa11.39□□□□□ -0.59
COL9A3-207ENST00000467819 FSIP2Q5CZC0 6907 aa11.39□□□□□ -0.59
COL9A3-207ENST00000467819 C3orf79P0CE67 100 aa11.37□□□□□ -0.59
COL9A3-207ENST00000467819 SCGB1D4Q6XE38 83 aa11.37□□□□□ -0.59
COL9A3-207ENST00000467819 SMIM29Q86T20 159 aa11.36□□□□□ -0.59
COL9A3-207ENST00000467819 CRCT1Q9UGL9 99 aa11.36□□□□□ -0.59
COL9A3-207ENST00000467819 A0A0G2JQZ4 141 aa11.35□□□□□ -0.59
COL9A3-207ENST00000467819 TRBV7-6A0A0J9YX20 115 aa11.35□□□□□ -0.59
COL9A3-207ENST00000467819 AKR1D1P51857 326 aa11.35□□□□□ -0.59
COL9A3-207ENST00000467819 A0A1B0GWB2 263 aa11.34□□□□□ -0.59
COL9A3-207ENST00000467819 A6NDN8 102 aa11.33□□□□□ -0.6
COL9A3-207ENST00000467819 KRTDAPP60985 99 aa11.33□□□□□ -0.6
COL9A3-207ENST00000467819 C1orf195Q5TG92 126 aa11.33□□□□□ -0.6
COL9A3-207ENST00000467819 Q5XG85 94 aa11.32□□□□□ -0.6
COL9A3-207ENST00000467819 IGLV5-48A0A075B6I7 105 aa11.31□□□□□ -0.6
COL9A3-207ENST00000467819 COPS9Q8WXC6 57 aa11.31□□□□□ -0.6
COL9A3-207ENST00000467819 CFC1BP0CG36 223 aa11.3□□□□□ -0.6
COL9A3-207ENST00000467819 ANKRD39Q53RE8 183 aa11.3□□□□□ -0.6
COL9A3-207ENST00000467819 IFITM1P13164 125 aa11.29□□□□□ -0.6
COL9A3-207ENST00000467819 MUSTN1Q8IVN3 82 aa11.28□□□□□ -0.6
COL9A3-207ENST00000467819 RPL37P61927 97 aaKnown RBP11.26□□□□□ -0.61
COL9A3-207ENST00000467819 ATOH7Q8N100 152 aa11.26□□□□□ -0.61
COL9A3-207ENST00000467819 C20orf202A1L168 122 aa11.25□□□□□ -0.61
COL9A3-207ENST00000467819 A4D1N5 150 aa11.24□□□□□ -0.61
COL9A3-207ENST00000467819 Q6ZVH6 145 aa11.24□□□□□ -0.61
COL9A3-207ENST00000467819 PCP2Q8IVA1 136 aa11.23□□□□□ -0.61
COL9A3-207ENST00000467819 SMIM11BQ8TCY0 68 aa11.23□□□□□ -0.61
COL9A3-207ENST00000467819 NHP2Q9NX24 153 aaKnown RBP11.23□□□□□ -0.61
COL9A3-207ENST00000467819 TRAV13-2A0A0B4J235 113 aa11.21□□□□□ -0.61
COL9A3-207ENST00000467819 TCL1BO95988 128 aa11.21□□□□□ -0.61
COL9A3-207ENST00000467819 LORP23490 312 aaPredicted RBP11.21□□□□□ -0.61
COL9A3-207ENST00000467819 KRTAP10-6P60371 365 aaPredicted RBP11.21□□□□□ -0.61
COL9A3-207ENST00000467819 COA6Q5JTJ3 125 aaKnown RBP11.21□□□□□ -0.61
COL9A3-207ENST00000467819 M0R2T5 61 aa11.2□□□□□ -0.62
COL9A3-207ENST00000467819 COX6B2Q6YFQ2 88 aa11.19□□□□□ -0.62
COL9A3-207ENST00000467819 F8WEM9 126 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms