RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TRRAPQ9Y4A5 3859 aa3.12□□□□□ -1.91
CCDC88A-209ENST00000456975 A0A1W2PNM2 257 aa3.12□□□□□ -1.91
CCDC88A-209ENST00000456975 ELOF1P60002 83 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-209ENST00000456975 TET2Q6N021 2002 aaPredicted RBP3.12□□□□□ -1.91
CCDC88A-209ENST00000456975 KMT2CQ8NEZ4 4911 aaKnown RBP3.12□□□□□ -1.91
CCDC88A-209ENST00000456975 BPY2O14599 106 aa3.12□□□□□ -1.91
CCDC88A-209ENST00000456975 HIGD2AQ9BW72 106 aa3.12□□□□□ -1.91
CCDC88A-209ENST00000456975 IGHV3-49A0A0A0MS15 119 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 IGHV3-73A0A0B4J1V6 119 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 IGHV7-4-1A0A0J9YVY3 117 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 C17orf98A8MV24 154 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 K7ERS5 55 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 C9orf129Q5T035 196 aaKnown RBP3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 NPBQ8NG41 125 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 ZNF625Q96I27 306 aaPredicted RBP3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 NBEAL2Q6ZNJ1 2754 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 TRAV21A0A0B4J279 112 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 NDPQ00604 133 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 PIGYQ3MUY2 71 aa3.11□□□□□ -1.91
CCDC88A-209ENST00000456975 ORMDL1Q9P0S3 153 aa3.1□□□□□ -1.91
CCDC88A-209ENST00000456975 DPM3Q9P2X0 92 aa3.1□□□□□ -1.91
CCDC88A-209ENST00000456975 WNK1Q9H4A3 2382 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 LCE6AA0A183 80 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 CCL3L1P16619 93 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 MUC7Q8TAX7 377 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 C20orf166-AS1Q96NR2 134 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 Q9BRP9 147 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 ODF3BA8MYP8 253 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 JMJD7-PLA2G4BH0Y9G9 81 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 IGHV1-8P0DP01 117 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 FAM74A4Q5TZK3 123 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 Q8TAT8 98 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 C7orf33Q8WU49 177 aa3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 MRPL36Q9P0J6 103 aaKnown RBP3.09□□□□□ -1.91
CCDC88A-209ENST00000456975 IGLV4-69A0A075B6H9 119 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 TRBV6-1A0A0K0K1D8 114 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 P0C879 139 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 ZCCHC13Q8WW36 166 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 KRTAP4-11Q9BYQ6 195 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 VWFP04275 2813 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 IGKV2D-30A0A075B6S6 120 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 PPP1R17O96001 155 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 CNBPP62633 177 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 DEFB112Q30KQ8 113 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 BRD3OSQ6XYD6 125 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 Q8N377 158 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 PLAC8Q9NZF1 115 aa3.08□□□□□ -1.92
CCDC88A-209ENST00000456975 PRB3Q04118 309 aaPredicted RBP3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 SPAG11BQ08648 103 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 MINOS1Q5TGZ0 78 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 SPAG11AQ6PDA7 123 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 CHCHD7Q9BUK0 85 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 LINC01558Q9Y6Z2 57 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 MINOS1-NBL1R4GNA1 71 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 CMYA5Q8N3K9 4069 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 NCR3O14931 201 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 NDUFB1O75438 58 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 IGKV1-17P01599 117 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 LINC00483Q53H64 154 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 MIR7-3HGQ8N6C7 128 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 CIRBP-AS1Q8TBR5 109 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 ZNRD1Q9P1U0 126 aa3.07□□□□□ -1.92
CCDC88A-209ENST00000456975 BIRC6Q9NR09 4857 aa3.06□□□□□ -1.92
CCDC88A-209ENST00000456975 WNK2Q9Y3S1 2297 aa3.06□□□□□ -1.92
CCDC88A-209ENST00000456975 IGLV8-61A0A075B6I0 122 aa3.06□□□□□ -1.92
CCDC88A-209ENST00000456975 SPINK7P58062 85 aa3.06□□□□□ -1.92
CCDC88A-209ENST00000456975 LINC01006Q8NI28 216 aa3.06□□□□□ -1.92
CCDC88A-209ENST00000456975 LINC00208Q96KT6 92 aa3.06□□□□□ -1.92
CCDC88A-209ENST00000456975 TRBV10-1A0A0K0K1A3 114 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 A6NDX4 124 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 GAS8-AS1O95177 125 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 PRB2P02812 416 aaPredicted RBP3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 DNAH10OSP0CZ25 163 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 HAMPP81172 84 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 C2orf66Q6UXQ4 117 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 Q8N9W7 124 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 EPPK1P58107 5090 aaKnown RBP3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 A0A087WSZ3 146 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 NDUFAF8A1L188 74 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 Q86TA4 180 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 LEAP2Q969E1 77 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 LINC00167Q96N53 147 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 LENEPQ9Y5L5 61 aa3.05□□□□□ -1.92
CCDC88A-209ENST00000456975 IGHV1-3A0A0C4DH29 117 aa3.04□□□□□ -1.92
CCDC88A-209ENST00000456975 IGHV3-66A0A0C4DH42 116 aa3.04□□□□□ -1.92
CCDC88A-209ENST00000456975 IGHV3-23P01764 117 aa3.04□□□□□ -1.92
CCDC88A-209ENST00000456975 CNFNQ9BYD5 112 aa3.04□□□□□ -1.92
CCDC88A-209ENST00000456975 A8MUU9 505 aa3.04□□□□□ -1.92
CCDC88A-209ENST00000456975 H3BUX3 64 aa3.04□□□□□ -1.92
CCDC88A-209ENST00000456975 IGLV1-50A0A075B6I6 118 aa3.03□□□□□ -1.92
CCDC88A-209ENST00000456975 A0A1B0GVX0 72 aa3.03□□□□□ -1.92
CCDC88A-209ENST00000456975 H0YGX0 51 aa3.03□□□□□ -1.92
CCDC88A-209ENST00000456975 KPRPQ5T749 579 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-209ENST00000456975 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.03□□□□□ -1.92
CCDC88A-209ENST00000456975 SPANXA2-OT1Q8N9U9 137 aa3.03□□□□□ -1.92
CCDC88A-209ENST00000456975 PRR34Q9NV39 138 aa3.03□□□□□ -1.92
CCDC88A-209ENST00000456975 IGLV10-54A0A075B6I4 117 aa3.03□□□□□ -1.93
CCDC88A-209ENST00000456975 IGKV1D-37A0A075B6S9 117 aa3.03□□□□□ -1.93
CCDC88A-209ENST00000456975 A0A087WYN8 130 aa3.03□□□□□ -1.93
CCDC88A-209ENST00000456975 PDE6GP18545 87 aa3.03□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms