RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	LINC00337	Q8N6G1	96 aa		5.01	□□□□□ -1.61
RFX3-209	ENST00000451859	KCNQ1DN	Q9H478	68 aa		5.01	□□□□□ -1.61
RFX3-209	ENST00000451859	ZNF706	Q9Y5V0	76 aa	Predicted RBP	5.01	□□□□□ -1.61
RFX3-209	ENST00000451859	MUC2	Q02817	5179 aa		5	□□□□□ -1.61
RFX3-209	ENST00000451859	SPRR1A	P35321	89 aa		5	□□□□□ -1.61
RFX3-209	ENST00000451859	S100A7L2	Q5SY68	101 aa		5	□□□□□ -1.61
RFX3-209	ENST00000451859		B5MCH6	92 aa		4.99	□□□□□ -1.61
RFX3-209	ENST00000451859	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.99	□□□□□ -1.61
RFX3-209	ENST00000451859	NMU	P48645	174 aa		4.99	□□□□□ -1.61
RFX3-209	ENST00000451859	GAGE2A	Q6NT46	116 aa		4.99	□□□□□ -1.61
RFX3-209	ENST00000451859		Q8NBF4	154 aa		4.99	□□□□□ -1.61
RFX3-209	ENST00000451859	SPANXB1	Q9NS25	103 aa	Predicted RBP	4.99	□□□□□ -1.61
RFX3-209	ENST00000451859	IGLV7-46	A0A075B6I9	117 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859		A0A0J9YXY3	114 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BK	O60814	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	ERC2-IT1	O76042	136 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BJ	P06899	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BO	P23527	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BB	P33778	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BD	P58876	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BC	P62807	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST2H2BE	Q16778	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	KRTAP15-1	Q3LI76	137 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	ANKRD39	Q53RE8	183 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	SOSTDC1	Q6X4U4	206 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BH	Q93079	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BN	Q99877	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	HIST1H2BM	Q99879	126 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	CDIP1	Q9H305	208 aa		4.98	□□□□□ -1.61
RFX3-209	ENST00000451859	IGLV9-49	A0A0B4J1Y8	123 aa		4.97	□□□□□ -1.61
RFX3-209	ENST00000451859	TRBV10-2	A0A0K0K1G8	114 aa		4.97	□□□□□ -1.61
RFX3-209	ENST00000451859		E9PLD3	99 aa		4.97	□□□□□ -1.61
RFX3-209	ENST00000451859	SYS1-DBNDD2	H3BUS1	97 aa		4.97	□□□□□ -1.61
RFX3-209	ENST00000451859	MOBP	Q13875	183 aa		4.97	□□□□□ -1.61
RFX3-209	ENST00000451859	ADAMTSL4-AS1	Q5T5F5	129 aa		4.97	□□□□□ -1.61
RFX3-209	ENST00000451859		Q9BRP9	147 aa		4.97	□□□□□ -1.61
RFX3-209	ENST00000451859	MUC17	Q685J3	4493 aa		4.96	□□□□□ -1.62
RFX3-209	ENST00000451859	TRAV23DV6	A0A075B6W5	121 aa		4.96	□□□□□ -1.62
RFX3-209	ENST00000451859	LOC107984156	A0A0G2JMH3	177 aa		4.96	□□□□□ -1.62
RFX3-209	ENST00000451859	SPAG11A	Q6PDA7	123 aa		4.96	□□□□□ -1.62
RFX3-209	ENST00000451859		Q6ZRX8	168 aa		4.96	□□□□□ -1.62
RFX3-209	ENST00000451859	ARL17A	Q8IVW1	177 aa		4.96	□□□□□ -1.62
RFX3-209	ENST00000451859	NDUFC2	O95298	119 aa		4.95	□□□□□ -1.62
RFX3-209	ENST00000451859	ZNF815P	A8K554	130 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	IGLV6-57	P01721	117 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	TPRXL	Q17RH7	258 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	LINC00483	Q53H64	154 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	C9orf153	Q5TBE3	101 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	LINC01545	Q5VT33	79 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	OR13C6P	Q8NH95	151 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	TTTY13	Q9BZ97	58 aa		4.94	□□□□□ -1.62
RFX3-209	ENST00000451859	ZNF73	O43830	326 aa	Predicted RBP	4.93	□□□□□ -1.62
RFX3-209	ENST00000451859	C3orf79	P0CE67	100 aa		4.93	□□□□□ -1.62
RFX3-209	ENST00000451859	KRTDAP	P60985	99 aa		4.93	□□□□□ -1.62
RFX3-209	ENST00000451859	JOSD1	Q15040	202 aa	Predicted RBP	4.93	□□□□□ -1.62
RFX3-209	ENST00000451859	PET117	Q6UWS5	81 aa		4.93	□□□□□ -1.62
RFX3-209	ENST00000451859	ST20-AS1	Q8NBB2	130 aa		4.93	□□□□□ -1.62
RFX3-209	ENST00000451859	LINC00308	Q8TCZ7	52 aa		4.93	□□□□□ -1.62
RFX3-209	ENST00000451859		A0A0U1RQV1	116 aa		4.92	□□□□□ -1.62
RFX3-209	ENST00000451859	LITAF	Q99732	161 aa		4.92	□□□□□ -1.62
RFX3-209	ENST00000451859	FAT4	Q6V0I7	4981 aa		4.92	□□□□□ -1.62
RFX3-209	ENST00000451859	SPINK1	P00995	79 aa		4.91	□□□□□ -1.62
RFX3-209	ENST00000451859	HINT1	P49773	126 aa	Predicted RBP	4.91	□□□□□ -1.62
RFX3-209	ENST00000451859	CTAG1A	P78358	180 aa		4.91	□□□□□ -1.62
RFX3-209	ENST00000451859	SPANXC	Q9NY87	97 aa		4.91	□□□□□ -1.62
RFX3-209	ENST00000451859	TIMM17B	O60830	172 aa		4.9	□□□□□ -1.63
RFX3-209	ENST00000451859	FP248	Q71RG6	208 aa	Predicted RBP	4.9	□□□□□ -1.63
RFX3-209	ENST00000451859	ATOH7	Q8N100	152 aa		4.9	□□□□□ -1.63
RFX3-209	ENST00000451859	SCGB1D4	Q6XE38	83 aa		4.89	□□□□□ -1.63
RFX3-209	ENST00000451859	CBY1	Q9Y3M2	126 aa		4.89	□□□□□ -1.63
RFX3-209	ENST00000451859	C20orf202	A1L168	122 aa		4.88	□□□□□ -1.63
RFX3-209	ENST00000451859	KRTAP13-3	Q3SY46	172 aa		4.88	□□□□□ -1.63
RFX3-209	ENST00000451859	C6orf99	Q4VX62	202 aa		4.88	□□□□□ -1.63
RFX3-209	ENST00000451859	SSBP3-AS1	Q7Z2R9	100 aa		4.88	□□□□□ -1.63
RFX3-209	ENST00000451859		Q8N377	158 aa		4.88	□□□□□ -1.63
RFX3-209	ENST00000451859	SPANXD	Q9BXN6	97 aa		4.88	□□□□□ -1.63
RFX3-209	ENST00000451859	COX7B	P24311	80 aa		4.87	□□□□□ -1.63
RFX3-209	ENST00000451859	COA6	Q5JTJ3	125 aa	Known RBP	4.87	□□□□□ -1.63
RFX3-209	ENST00000451859	HRCT1	Q6UXD1	115 aa		4.87	□□□□□ -1.63
RFX3-209	ENST00000451859	DEFB105A	Q8NG35	78 aa		4.87	□□□□□ -1.63
RFX3-209	ENST00000451859	PCP2	Q8IVA1	136 aa		4.86	□□□□□ -1.63
RFX3-209	ENST00000451859	DHRS4-AS1	Q9P1J3	65 aa		4.86	□□□□□ -1.63
RFX3-209	ENST00000451859		A6NDN8	102 aa		4.85	□□□□□ -1.63
RFX3-209	ENST00000451859	SLC25A20	O43772	301 aa		4.85	□□□□□ -1.63
RFX3-209	ENST00000451859	RPS29	P62273	56 aa	Known RBP	4.85	□□□□□ -1.63
RFX3-209	ENST00000451859	TAL2	Q16559	108 aa		4.85	□□□□□ -1.63
RFX3-209	ENST00000451859		Q1RN00	199 aa		4.85	□□□□□ -1.63
RFX3-209	ENST00000451859	LINC00518	Q8N0U6	118 aa		4.85	□□□□□ -1.63
RFX3-209	ENST00000451859	ELOF1	P60002	83 aa	Known RBP	4.84	□□□□□ -1.63
RFX3-209	ENST00000451859	SLC25A34	Q6PIV7	304 aa		4.84	□□□□□ -1.63
RFX3-209	ENST00000451859	LAMTOR3	Q9UHA4	124 aa		4.84	□□□□□ -1.63
RFX3-209	ENST00000451859	SPRR1B	P22528	89 aa		4.83	□□□□□ -1.64
RFX3-209	ENST00000451859	MUSTN1	Q8IVN3	82 aa		4.83	□□□□□ -1.64
RFX3-209	ENST00000451859	C5orf52	A6NGY3	159 aa		4.82	□□□□□ -1.64
RFX3-209	ENST00000451859	IFITM1	P13164	125 aa		4.82	□□□□□ -1.64
RFX3-209	ENST00000451859	COPS9	Q8WXC6	57 aa		4.82	□□□□□ -1.64
RFX3-209	ENST00000451859		A0A1B0GWB2	263 aa		4.81	□□□□□ -1.64
RFX3-209	ENST00000451859		H7C2G1	150 aa		4.81	□□□□□ -1.64
RFX3-209	ENST00000451859	S100A2	P29034	98 aa		4.81	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 334.5 ms