RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 S100A6P06703 90 aa13.84□□□□□ -0.19
VARS-217ENST00000440048 TRAV23DV6A0A075B6W5 121 aa13.83□□□□□ -0.2
VARS-217ENST00000440048 TSPAN13O95857 204 aa13.83□□□□□ -0.2
VARS-217ENST00000440048 SCGB1D4Q6XE38 83 aa13.83□□□□□ -0.2
VARS-217ENST00000440048 ZNF706Q9Y5V0 76 aaPredicted RBP13.83□□□□□ -0.2
VARS-217ENST00000440048 PCP2Q8IVA1 136 aa13.8□□□□□ -0.2
VARS-217ENST00000440048 C3orf22Q8N5N4 141 aa13.8□□□□□ -0.2
VARS-217ENST00000440048 SPANXDQ9BXN6 97 aa13.8□□□□□ -0.2
VARS-217ENST00000440048 SNRPEP62304 92 aaKnown RBP13.79□□□□□ -0.2
VARS-217ENST00000440048 Q6ZRX8 168 aa13.79□□□□□ -0.2
VARS-217ENST00000440048 ERC2-IT1O76042 136 aa13.78□□□□□ -0.2
VARS-217ENST00000440048 Q9BRP9 147 aa13.78□□□□□ -0.2
VARS-217ENST00000440048 ZNF73O43830 326 aaPredicted RBP13.77□□□□□ -0.21
VARS-217ENST00000440048 LINC00304Q8N9R0 145 aa13.77□□□□□ -0.21
VARS-217ENST00000440048 OR13C6PQ8NH95 151 aa13.77□□□□□ -0.21
VARS-217ENST00000440048 PPDPFQ9H3Y8 114 aa13.76□□□□□ -0.21
VARS-217ENST00000440048 CBY1Q9Y3M2 126 aa13.76□□□□□ -0.21
VARS-217ENST00000440048 LPAP08519 4548 aa13.75□□□□□ -0.21
VARS-217ENST00000440048 PRR4Q16378 134 aa13.74□□□□□ -0.21
VARS-217ENST00000440048 RNF213Q63HN8 5207 aa13.74□□□□□ -0.21
VARS-217ENST00000440048 LINC00483Q53H64 154 aa13.73□□□□□ -0.21
VARS-217ENST00000440048 LINC00518Q8N0U6 118 aa13.73□□□□□ -0.21
VARS-217ENST00000440048 IFITM1P13164 125 aa13.72□□□□□ -0.21
VARS-217ENST00000440048 JOSD1Q15040 202 aaPredicted RBP13.72□□□□□ -0.21
VARS-217ENST00000440048 GAGE2AQ6NT46 116 aa13.71□□□□□ -0.21
VARS-217ENST00000440048 Q6ZVH6 145 aa13.71□□□□□ -0.21
VARS-217ENST00000440048 COPS9Q8WXC6 57 aa13.71□□□□□ -0.21
VARS-217ENST00000440048 C5orf52A6NGY3 159 aa13.7□□□□□ -0.22
VARS-217ENST00000440048 HSBP1L1C9JCN9 74 aa13.7□□□□□ -0.22
VARS-217ENST00000440048 HINT1P49773 126 aaPredicted RBP13.69□□□□□ -0.22
VARS-217ENST00000440048 MUSTN1Q8IVN3 82 aa13.69□□□□□ -0.22
VARS-217ENST00000440048 SCGB1D1O95968 90 aa13.65□□□□□ -0.22
VARS-217ENST00000440048 CTAG1AP78358 180 aa13.64□□□□□ -0.23
VARS-217ENST00000440048 Q8NBF4 154 aa13.63□□□□□ -0.23
VARS-217ENST00000440048 C6orf99Q4VX62 202 aa13.62□□□□□ -0.23
VARS-217ENST00000440048 SPAG11AQ6PDA7 123 aa13.62□□□□□ -0.23
VARS-217ENST00000440048 ST20-AS1Q8NBB2 130 aa13.62□□□□□ -0.23
VARS-217ENST00000440048 RETNLBQ9BQ08 111 aa13.61□□□□□ -0.23
VARS-217ENST00000440048 IGLV9-49A0A0B4J1Y8 123 aa13.6□□□□□ -0.23
VARS-217ENST00000440048 A6NDN8 102 aa13.6□□□□□ -0.23
VARS-217ENST00000440048 COX7BP24311 80 aa13.6□□□□□ -0.23
VARS-217ENST00000440048 ELOF1P60002 83 aaKnown RBP13.59□□□□□ -0.23
VARS-217ENST00000440048 MOBPQ13875 183 aa13.59□□□□□ -0.23
VARS-217ENST00000440048 C4orf48Q5BLP8 95 aa13.59□□□□□ -0.23
VARS-217ENST00000440048 DHRS4-AS1Q9P1J3 65 aa13.59□□□□□ -0.23
VARS-217ENST00000440048 SSBP3-AS1Q7Z2R9 100 aa13.55□□□□□ -0.24
VARS-217ENST00000440048 TRAV13-2A0A0B4J235 113 aa13.54□□□□□ -0.24
VARS-217ENST00000440048 TRBV7-6A0A0J9YX20 115 aa13.54□□□□□ -0.24
VARS-217ENST00000440048 COX8AP10176 69 aa13.51□□□□□ -0.25
VARS-217ENST00000440048 SPRR1BP22528 89 aa13.51□□□□□ -0.25
VARS-217ENST00000440048 A0A1B0GWB2 263 aa13.5□□□□□ -0.25
VARS-217ENST00000440048 SPINK1P00995 79 aa13.5□□□□□ -0.25
VARS-217ENST00000440048 C9orf153Q5TBE3 101 aa13.5□□□□□ -0.25
VARS-217ENST00000440048 A4D1N5 150 aa13.49□□□□□ -0.25
VARS-217ENST00000440048 SMIM11BQ8TCY0 68 aa13.49□□□□□ -0.25
VARS-217ENST00000440048 IGLV7-46A0A075B6I9 117 aa13.46□□□□□ -0.25
VARS-217ENST00000440048 DLEU1O43261 78 aa13.46□□□□□ -0.25
VARS-217ENST00000440048 SLC25A34Q6PIV7 304 aa13.45□□□□□ -0.26
VARS-217ENST00000440048 HIST1H4GQ99525 98 aa13.45□□□□□ -0.26
VARS-217ENST00000440048 PAM16Q9Y3D7 125 aa13.45□□□□□ -0.26
VARS-217ENST00000440048 TAL2Q16559 108 aa13.44□□□□□ -0.26
VARS-217ENST00000440048 C14orf144Q96I85 54 aa13.44□□□□□ -0.26
VARS-217ENST00000440048 SPATA45Q537H7 98 aa13.43□□□□□ -0.26
VARS-217ENST00000440048 DEFB105AQ8NG35 78 aa13.43□□□□□ -0.26
VARS-217ENST00000440048 LAMTOR3Q9UHA4 124 aa13.42□□□□□ -0.26
VARS-217ENST00000440048 RPS29P62273 56 aaKnown RBP13.41□□□□□ -0.26
VARS-217ENST00000440048 VAMP8Q9BV40 100 aa13.41□□□□□ -0.26
VARS-217ENST00000440048 TEX49A0A1B0GTD5 131 aa13.4□□□□□ -0.26
VARS-217ENST00000440048 TPRXLQ17RH7 258 aa13.4□□□□□ -0.26
VARS-217ENST00000440048 FP248Q71RG6 208 aaPredicted RBP13.39□□□□□ -0.27
VARS-217ENST00000440048 C12orf57Q99622 126 aa13.39□□□□□ -0.27
VARS-217ENST00000440048 LINC01547P58512 204 aaPredicted RBP13.37□□□□□ -0.27
VARS-217ENST00000440048 VAMP3Q15836 100 aa13.37□□□□□ -0.27
VARS-217ENST00000440048 Q1RN00 199 aa13.37□□□□□ -0.27
VARS-217ENST00000440048 Q8N377 158 aa13.37□□□□□ -0.27
VARS-217ENST00000440048 NHP2Q9NX24 153 aaKnown RBP13.37□□□□□ -0.27
VARS-217ENST00000440048 IGLV5-48A0A075B6I7 105 aa13.36□□□□□ -0.27
VARS-217ENST00000440048 HIGD1BQ9P298 99 aa13.36□□□□□ -0.27
VARS-217ENST00000440048 SMIM29Q86T20 159 aa13.34□□□□□ -0.27
VARS-217ENST00000440048 CDIP1Q9H305 208 aa13.34□□□□□ -0.27
VARS-217ENST00000440048 C2orf91Q6ZV80 131 aa13.33□□□□□ -0.28
VARS-217ENST00000440048 SLC25A20O43772 301 aa13.32□□□□□ -0.28
VARS-217ENST00000440048 LINC00575Q6W349 94 aa13.32□□□□□ -0.28
VARS-217ENST00000440048 TMA7Q9Y2S6 64 aaKnown RBP13.3□□□□□ -0.28
VARS-217ENST00000440048 PYY3Q5JQD4 70 aa13.29□□□□□ -0.28
VARS-217ENST00000440048 HRCT1Q6UXD1 115 aa13.29□□□□□ -0.28
VARS-217ENST00000440048 MUC2Q02817 5179 aa13.28□□□□□ -0.28
VARS-217ENST00000440048 CFC1BP0CG36 223 aa13.28□□□□□ -0.28
VARS-217ENST00000440048 CFC1P0CG37 223 aa13.28□□□□□ -0.28
VARS-217ENST00000440048 PRO1933Q9H354 126 aa13.28□□□□□ -0.28
VARS-217ENST00000440048 hADV29S1A0JD25 119 aa13.26□□□□□ -0.29
VARS-217ENST00000440048 KRTAP13-3Q3SY46 172 aa13.26□□□□□ -0.29
VARS-217ENST00000440048 A0A0U1RQV1 116 aa13.24□□□□□ -0.29
VARS-217ENST00000440048 H7C2G1 150 aa13.24□□□□□ -0.29
VARS-217ENST00000440048 BVES-AS1Q5T3Y7 98 aa13.24□□□□□ -0.29
VARS-217ENST00000440048 RAB37Q96AX2 223 aa13.24□□□□□ -0.29
VARS-217ENST00000440048 CD164Q04900 197 aa13.23□□□□□ -0.29
VARS-217ENST00000440048 Q6ZQY7 126 aa13.23□□□□□ -0.29
VARS-217ENST00000440048 A0A0B4J2C4 111 aa13.22□□□□□ -0.29
VARS-217ENST00000440048 CEND1Q8N111 149 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 149.4 ms