RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 DNAH10Q8IVF4 4471 aa6.29□□□□□ -1.4
CUX1-206ENST00000437600 KRTAP21-3Q3LHN1 58 aa6.28□□□□□ -1.4
CUX1-206ENST00000437600 CASC10Q5T4H9 136 aa6.27□□□□□ -1.41
CUX1-206ENST00000437600 B9D2Q9BPU9 175 aa6.27□□□□□ -1.41
CUX1-206ENST00000437600 SRRM2Q9UQ35 2752 aaKnown RBP6.27□□□□□ -1.41
CUX1-206ENST00000437600 M0R2N4 97 aa6.27□□□□□ -1.41
CUX1-206ENST00000437600 Q6ZQY7 126 aa6.26□□□□□ -1.41
CUX1-206ENST00000437600 C15orf56Q8N910 161 aa6.26□□□□□ -1.41
CUX1-206ENST00000437600 DNAH1Q9P2D7 4330 aa6.26□□□□□ -1.41
CUX1-206ENST00000437600 TRAV23DV6A0A075B6W5 121 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 KRTAP26-1Q6PEX3 210 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 LAMTOR3Q9UHA4 124 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 EPM2AB3EWF7 344 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 GHRHP01286 108 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 Q6ZRP5 223 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 LINC00588Q9Y4M8 146 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 KMT2AQ03164 3969 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 TRAV10A0A0B4J240 114 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 H3BNG1 76 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 LINC00575Q6W349 94 aa6.25□□□□□ -1.41
CUX1-206ENST00000437600 FP248Q71RG6 208 aaPredicted RBP6.24□□□□□ -1.41
CUX1-206ENST00000437600 C20orf197Q8N268 126 aa6.24□□□□□ -1.41
CUX1-206ENST00000437600 SERP1Q9Y6X1 66 aa6.23□□□□□ -1.41
CUX1-206ENST00000437600 TMEM256-PLSCR3K7ERE1 68 aa6.23□□□□□ -1.41
CUX1-206ENST00000437600 IGLV6-57P01721 117 aa6.23□□□□□ -1.41
CUX1-206ENST00000437600 DYNC2H1Q8NCM8 4307 aaKnown RBP6.22□□□□□ -1.41
CUX1-206ENST00000437600 SMIM26A0A096LP01 95 aa6.22□□□□□ -1.41
CUX1-206ENST00000437600 FAM168BA1KXE4 195 aa6.22□□□□□ -1.41
CUX1-206ENST00000437600 RPL37AP8A6NKH3 93 aa6.22□□□□□ -1.41
CUX1-206ENST00000437600 OBSCN-AS1Q96MR7 158 aa6.22□□□□□ -1.41
CUX1-206ENST00000437600 ZNF73O43830 326 aaPredicted RBP6.21□□□□□ -1.41
CUX1-206ENST00000437600 LINC01556Q5JQF7 62 aa6.21□□□□□ -1.42
CUX1-206ENST00000437600 DEFB105AQ8NG35 78 aa6.21□□□□□ -1.42
CUX1-206ENST00000437600 NDUFC2-KCTD14E9PQ53 114 aa6.2□□□□□ -1.42
CUX1-206ENST00000437600 CCKP06307 115 aa6.2□□□□□ -1.42
CUX1-206ENST00000437600 VPREB1P12018 145 aa6.2□□□□□ -1.42
CUX1-206ENST00000437600 SERTAD4-AS1Q5TG53 156 aa6.2□□□□□ -1.42
CUX1-206ENST00000437600 RBM3P98179 157 aaKnown RBP6.19□□□□□ -1.42
CUX1-206ENST00000437600 SYCNQ0VAF6 134 aa6.19□□□□□ -1.42
CUX1-206ENST00000437600 DIRC1Q969H9 104 aa6.19□□□□□ -1.42
CUX1-206ENST00000437600 MRPL55Q7Z7F7 128 aaKnown RBP6.18□□□□□ -1.42
CUX1-206ENST00000437600 LINC00167Q96N53 147 aa6.18□□□□□ -1.42
CUX1-206ENST00000437600 GVQW2A0A096LPI5 108 aaPredicted RBP6.17□□□□□ -1.42
CUX1-206ENST00000437600 DNAH10OSP0CZ25 163 aa6.17□□□□□ -1.42
CUX1-206ENST00000437600 LINC00474Q9P2X8 69 aa6.17□□□□□ -1.42
CUX1-206ENST00000437600 JMJD7-PLA2G4BH0Y9G9 81 aa6.17□□□□□ -1.42
CUX1-206ENST00000437600 H3BS24 57 aa6.17□□□□□ -1.42
CUX1-206ENST00000437600 COX7BP24311 80 aa6.17□□□□□ -1.42
CUX1-206ENST00000437600 HAMPP81172 84 aa6.17□□□□□ -1.42
CUX1-206ENST00000437600 SCXQ7RTU7 201 aa6.17□□□□□ -1.42
CUX1-206ENST00000437600 KRTAP1-5Q9BYS1 174 aa6.16□□□□□ -1.42
CUX1-206ENST00000437600 ATP5EP2Q5VTU8 51 aa6.15□□□□□ -1.42
CUX1-206ENST00000437600 UBL5Q9BZL1 73 aa6.15□□□□□ -1.42
CUX1-206ENST00000437600 HYDINQ4G0P3 5121 aa6.15□□□□□ -1.42
CUX1-206ENST00000437600 SNURFQ9Y675 71 aa6.15□□□□□ -1.43
CUX1-206ENST00000437600 VPS13DQ5THJ4 4388 aa6.15□□□□□ -1.43
CUX1-206ENST00000437600 H7BZZ5 65 aa6.15□□□□□ -1.43
CUX1-206ENST00000437600 M0R378 163 aa6.15□□□□□ -1.43
CUX1-206ENST00000437600 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.15□□□□□ -1.43
CUX1-206ENST00000437600 UBE2DNLQ8IWF7 75 aa6.15□□□□□ -1.43
CUX1-206ENST00000437600 Q6ZQT0 140 aa6.14□□□□□ -1.43
CUX1-206ENST00000437600 DNAH2Q9P225 4427 aa6.14□□□□□ -1.43
CUX1-206ENST00000437600 NKAPP1Q8N9T2 125 aa6.14□□□□□ -1.43
CUX1-206ENST00000437600 C7orf33Q8WU49 177 aa6.14□□□□□ -1.43
CUX1-206ENST00000437600 ELOF1P60002 83 aaKnown RBP6.13□□□□□ -1.43
CUX1-206ENST00000437600 PRR15Q8IV56 129 aa6.13□□□□□ -1.43
CUX1-206ENST00000437600 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.12□□□□□ -1.43
CUX1-206ENST00000437600 IGKV2-24A0A0C4DH68 120 aa6.12□□□□□ -1.43
CUX1-206ENST00000437600 RMI2Q96E14 147 aa6.12□□□□□ -1.43
CUX1-206ENST00000437600 KRTAP7-1Q8IUC3 87 aa6.12□□□□□ -1.43
CUX1-206ENST00000437600 TRAV7A0A075B6U4 112 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 A0A0G2JQZ4 141 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 A0A1W2PNN7 141 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 LINC00528Q8N1L1 170 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 ST20-AS1Q8NBB2 130 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 F8WEM9 126 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 Q8N9L7 120 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 MUC7Q8TAX7 377 aa6.11□□□□□ -1.43
CUX1-206ENST00000437600 RBM12B-AS1Q9P1G2 102 aa6.1□□□□□ -1.43
CUX1-206ENST00000437600 APLNQ9ULZ1 77 aa6.1□□□□□ -1.43
CUX1-206ENST00000437600 C3orf84H3BNL1 204 aa6.1□□□□□ -1.43
CUX1-206ENST00000437600 FRAS1Q86XX4 4008 aa6.1□□□□□ -1.43
CUX1-206ENST00000437600 FUSP35637 526 aaKnown RBP eCLIP6.09□□□□□ -1.435e-7■■■■□ 23.7
CUX1-206ENST00000437600 Q6ZVQ6 151 aa6.09□□□□□ -1.43
CUX1-206ENST00000437600 TRBV7-6A0A0J9YX20 115 aa6.09□□□□□ -1.44
CUX1-206ENST00000437600 PSCAO43653 123 aa6.09□□□□□ -1.44
CUX1-206ENST00000437600 KMT2CQ8NEZ4 4911 aaKnown RBP6.08□□□□□ -1.44
CUX1-206ENST00000437600 ERC2-IT1O76042 136 aa6.08□□□□□ -1.44
CUX1-206ENST00000437600 LINC01547P58512 204 aaPredicted RBP6.08□□□□□ -1.44
CUX1-206ENST00000437600 MPLKIPQ8TAP9 179 aa6.08□□□□□ -1.44
CUX1-206ENST00000437600 KLKP1Q107X0 134 aa6.08□□□□□ -1.44
CUX1-206ENST00000437600 Q9BRP9 147 aa6.07□□□□□ -1.44
CUX1-206ENST00000437600 Q8N377 158 aa6.07□□□□□ -1.44
CUX1-206ENST00000437600 NUPR2A6NF83 97 aa6.06□□□□□ -1.44
CUX1-206ENST00000437600 CHTF8P0CG12 524 aa6.06□□□□□ -1.44
CUX1-206ENST00000437600 SACSQ9NZJ4 4579 aa6.05□□□□□ -1.44
CUX1-206ENST00000437600 TRBV7-4A0A0J9YYF1 115 aa6.05□□□□□ -1.44
CUX1-206ENST00000437600 KCNQ1DNQ9H478 68 aa6.05□□□□□ -1.44
CUX1-206ENST00000437600 LOC110117498A0A087WWA1 95 aa6.05□□□□□ -1.44
CUX1-206ENST00000437600 IGLV1-50A0A075B6I6 118 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms