RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KRTAP1-3Q8IUG1 177 aa8.22□□□□□ -1.09
HMGB1-206ENST00000405805 NDUFB1O75438 58 aa8.21□□□□□ -1.09
HMGB1-206ENST00000405805 C9orf66Q5T8R8 295 aa8.21□□□□□ -1.09
HMGB1-206ENST00000405805 HIVEP1P15822 2718 aa8.21□□□□□ -1.1
HMGB1-206ENST00000405805 IGHV4-30-4P0DP06 118 aa8.2□□□□□ -1.1
HMGB1-206ENST00000405805 MUC7Q8TAX7 377 aa8.2□□□□□ -1.1
HMGB1-206ENST00000405805 SMIM29Q86T20 159 aa8.19□□□□□ -1.1
HMGB1-206ENST00000405805 KLKP1Q107X0 134 aa8.19□□□□□ -1.1
HMGB1-206ENST00000405805 PCOTHQ58A44 107 aa8.18□□□□□ -1.1
HMGB1-206ENST00000405805 RBM12B-AS1Q9P1G2 102 aa8.18□□□□□ -1.1
HMGB1-206ENST00000405805 STAB1Q9NY15 2570 aa8.17□□□□□ -1.1
HMGB1-206ENST00000405805 OXLD1Q5BKU9 147 aa8.17□□□□□ -1.1
HMGB1-206ENST00000405805 VPREB1P12018 145 aa8.17□□□□□ -1.1
HMGB1-206ENST00000405805 CASC2Q6XLA1 102 aa8.17□□□□□ -1.1
HMGB1-206ENST00000405805 ZFHX3Q15911 3703 aa8.16□□□□□ -1.1
HMGB1-206ENST00000405805 RPL37AP8A6NKH3 93 aa8.16□□□□□ -1.1
HMGB1-206ENST00000405805 H3BQ85 93 aa8.16□□□□□ -1.1
HMGB1-206ENST00000405805 COL6A5A8TX70 2615 aa8.16□□□□□ -1.1
HMGB1-206ENST00000405805 BAHCC1Q9P281 2608 aa8.16□□□□□ -1.1
HMGB1-206ENST00000405805 TRAV22A0A0B4J277 110 aa8.16□□□□□ -1.1
HMGB1-206ENST00000405805 ZNF73O43830 326 aaPredicted RBP8.15□□□□□ -1.1
HMGB1-206ENST00000405805 LYPD5Q6UWN5 251 aa8.15□□□□□ -1.1
HMGB1-206ENST00000405805 SPATA3Q8NHX4 192 aa8.15□□□□□ -1.1
HMGB1-206ENST00000405805 B9D2Q9BPU9 175 aa8.15□□□□□ -1.1
HMGB1-206ENST00000405805 KTN1-AS1Q86SY8 53 aa8.15□□□□□ -1.11
HMGB1-206ENST00000405805 SPAG11AQ6PDA7 123 aa8.14□□□□□ -1.11
HMGB1-206ENST00000405805 C1orf64Q8NEQ6 169 aa8.14□□□□□ -1.11
HMGB1-206ENST00000405805 CXCL6P80162 114 aa8.14□□□□□ -1.11
HMGB1-206ENST00000405805 FAM229BQ4G0N7 80 aa8.14□□□□□ -1.11
HMGB1-206ENST00000405805 A0A1B0GUV1 79 aa8.13□□□□□ -1.11
HMGB1-206ENST00000405805 C16orf95Q9H693 158 aa8.13□□□□□ -1.11
HMGB1-206ENST00000405805 KPRPQ5T749 579 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-206ENST00000405805 LIMD2Q9BT23 127 aa8.12□□□□□ -1.11
HMGB1-206ENST00000405805 X6R8D5 127 aa8.12□□□□□ -1.11
HMGB1-206ENST00000405805 IGKV2-24A0A0C4DH68 120 aa8.12□□□□□ -1.11
HMGB1-206ENST00000405805 CSNK1G2-AS1Q8NCQ2 148 aa8.12□□□□□ -1.11
HMGB1-206ENST00000405805 LELP1Q5T871 98 aa8.11□□□□□ -1.11
HMGB1-206ENST00000405805 TENM4Q6N022 2769 aa8.11□□□□□ -1.11
HMGB1-206ENST00000405805 M0R2N4 97 aa8.1□□□□□ -1.11
HMGB1-206ENST00000405805 PSCAO43653 123 aa8.1□□□□□ -1.11
HMGB1-206ENST00000405805 KRTAP1-1Q07627 177 aa8.1□□□□□ -1.11
HMGB1-206ENST00000405805 COX17Q14061 63 aa8.1□□□□□ -1.11
HMGB1-206ENST00000405805 Q6ZQT0 140 aa8.1□□□□□ -1.11
HMGB1-206ENST00000405805 C19orf73Q9NVV2 129 aa8.1□□□□□ -1.11
HMGB1-206ENST00000405805 BCE1O60756 84 aa8.1□□□□□ -1.11
HMGB1-206ENST00000405805 Q6ZTC4 211 aa8.09□□□□□ -1.11
HMGB1-206ENST00000405805 NBPF19A0A087WUL8 3843 aa8.08□□□□□ -1.12
HMGB1-206ENST00000405805 Q6ZRU5 148 aa8.08□□□□□ -1.12
HMGB1-206ENST00000405805 PRR15Q8IV56 129 aa8.08□□□□□ -1.12
HMGB1-206ENST00000405805 C11orf45Q8TAV5 145 aa8.07□□□□□ -1.12
HMGB1-206ENST00000405805 KRTAP10-3P60369 221 aa8.07□□□□□ -1.12
HMGB1-206ENST00000405805 DEFB131BA0A096LNP1 70 aa8.07□□□□□ -1.12
HMGB1-206ENST00000405805 SYCNQ0VAF6 134 aa8.07□□□□□ -1.12
HMGB1-206ENST00000405805 C6orf48Q9UBA6 75 aa8.07□□□□□ -1.12
HMGB1-206ENST00000405805 C22orf24Q9Y442 160 aa8.07□□□□□ -1.12
HMGB1-206ENST00000405805 NSD1Q96L73 2696 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-206ENST00000405805 H0Y9P7 68 aa8.06□□□□□ -1.12
HMGB1-206ENST00000405805 KIAA0087Q14695 138 aa8.05□□□□□ -1.12
HMGB1-206ENST00000405805 C1orf137Q5JT78 98 aa8.04□□□□□ -1.12
HMGB1-206ENST00000405805 M0R378 163 aa8.03□□□□□ -1.12
HMGB1-206ENST00000405805 UBE2DNLQ8IWF7 75 aa8.03□□□□□ -1.12
HMGB1-206ENST00000405805 Q8NDZ9 215 aa8.03□□□□□ -1.12
HMGB1-206ENST00000405805 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.02□□□□□ -1.13
HMGB1-206ENST00000405805 ZNF706Q9Y5V0 76 aaPredicted RBP8.02□□□□□ -1.13
HMGB1-206ENST00000405805 LCA10Q71F78 164 aa8.01□□□□□ -1.13
HMGB1-206ENST00000405805 RETNLBQ9BQ08 111 aa8.01□□□□□ -1.13
HMGB1-206ENST00000405805 C7orf65Q6ZTY9 151 aa8.01□□□□□ -1.13
HMGB1-206ENST00000405805 LINC01600Q96MT4 127 aa8.01□□□□□ -1.13
HMGB1-206ENST00000405805 VWFP04275 2813 aa8□□□□□ -1.13
HMGB1-206ENST00000405805 ATP11AUNQ6ZP68 121 aa8□□□□□ -1.13
HMGB1-206ENST00000405805 EGFEM1PQ0D2K5 195 aa7.98□□□□□ -1.13
HMGB1-206ENST00000405805 hDV103S1A0JD37 113 aa7.97□□□□□ -1.13
HMGB1-206ENST00000405805 TENM1Q9UKZ4 2725 aa7.97□□□□□ -1.13
HMGB1-206ENST00000405805 PRAC1Q96KF2 57 aa7.97□□□□□ -1.13
HMGB1-206ENST00000405805 A0A087WSZ3 146 aa7.97□□□□□ -1.13
HMGB1-206ENST00000405805 OTOGQ6ZRI0 2925 aa7.96□□□□□ -1.14
HMGB1-206ENST00000405805 Q8NAQ8 132 aa7.96□□□□□ -1.14
HMGB1-206ENST00000405805 A0A0G2JQZ4 141 aa7.95□□□□□ -1.14
HMGB1-206ENST00000405805 A0A1W2PNN7 141 aa7.95□□□□□ -1.14
HMGB1-206ENST00000405805 C8orf87E5RJ46 101 aa7.95□□□□□ -1.14
HMGB1-206ENST00000405805 PDZD2O15018 2839 aa7.95□□□□□ -1.14
HMGB1-206ENST00000405805 LOC110117498A0A087WWA1 95 aa7.94□□□□□ -1.14
HMGB1-206ENST00000405805 TRBV7-4A0A0J9YYF1 115 aa7.94□□□□□ -1.14
HMGB1-206ENST00000405805 Q6ZRP5 223 aa7.93□□□□□ -1.14
HMGB1-206ENST00000405805 IGLV6-57P01721 117 aa7.93□□□□□ -1.14
HMGB1-206ENST00000405805 ST20-AS1Q8NBB2 130 aa7.93□□□□□ -1.14
HMGB1-206ENST00000405805 C7orf33Q8WU49 177 aa7.92□□□□□ -1.14
HMGB1-206ENST00000405805 FAM168BA1KXE4 195 aa7.92□□□□□ -1.14
HMGB1-206ENST00000405805 IGLV8-61A0A075B6I0 122 aa7.91□□□□□ -1.14
HMGB1-206ENST00000405805 SPINK6Q6UWN8 80 aa7.91□□□□□ -1.14
HMGB1-206ENST00000405805 LOC101927531A0A1B0GV80 90 aa7.91□□□□□ -1.14
HMGB1-206ENST00000405805 OBSCN-AS1Q96MR7 158 aa7.91□□□□□ -1.14
HMGB1-206ENST00000405805 ERC2-IT1O76042 136 aa7.9□□□□□ -1.14
HMGB1-206ENST00000405805 ELOF1P60002 83 aaKnown RBP7.9□□□□□ -1.14
HMGB1-206ENST00000405805 PRLHP81277 87 aa7.9□□□□□ -1.15
HMGB1-206ENST00000405805 COA5Q86WW8 74 aa7.89□□□□□ -1.15
HMGB1-206ENST00000405805 CYP4F30PQ9H0H9 118 aa7.89□□□□□ -1.15
HMGB1-206ENST00000405805 K7EQZ3 153 aa7.88□□□□□ -1.15
HMGB1-206ENST00000405805 RPL37AP61513 92 aaKnown RBP7.88□□□□□ -1.15
HMGB1-206ENST00000405805 ZNF469Q96JG9 3925 aaPredicted RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms