RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 C4orf26Q17RF5 130 aa12.01□□□□□ -0.49
COL18A1-204ENST00000400337 SPAG11AQ6PDA7 123 aa12□□□□□ -0.49
COL18A1-204ENST00000400337 PRO0628Q9UI54 55 aa12□□□□□ -0.49
COL18A1-204ENST00000400337 CHD9Q3L8U1 2897 aa11.98□□□□□ -0.49
COL18A1-204ENST00000400337 K7EQZ3 153 aa11.98□□□□□ -0.49
COL18A1-204ENST00000400337 C9orf129Q5T035 196 aaKnown RBP11.98□□□□□ -0.49
COL18A1-204ENST00000400337 HTTP42858 3142 aa11.96□□□□□ -0.49
COL18A1-204ENST00000400337 A8MWP4 228 aa11.96□□□□□ -0.5
COL18A1-204ENST00000400337 KRTAP1-1Q07627 177 aa11.96□□□□□ -0.5
COL18A1-204ENST00000400337 ATRQ13535 2644 aa11.95□□□□□ -0.5
COL18A1-204ENST00000400337 ITPR3Q14573 2671 aa11.94□□□□□ -0.5
COL18A1-204ENST00000400337 PLA2G1BP04054 148 aaKnown RBP11.93□□□□□ -0.5
COL18A1-204ENST00000400337 IGFL1Q6UW32 110 aa11.93□□□□□ -0.5
COL18A1-204ENST00000400337 Q96NJ1 140 aa11.92□□□□□ -0.5
COL18A1-204ENST00000400337 MAST4O15021 2626 aa11.91□□□□□ -0.5
COL18A1-204ENST00000400337 CENPEQ02224 2701 aa11.91□□□□□ -0.5
COL18A1-204ENST00000400337 Q8N377 158 aa11.91□□□□□ -0.5
COL18A1-204ENST00000400337 HELZ2Q9BYK8 2649 aaKnown RBP11.88□□□□□ -0.51
COL18A1-204ENST00000400337 A0A0G2JQZ4 141 aa11.87□□□□□ -0.51
COL18A1-204ENST00000400337 A0A1W2PNN7 141 aa11.87□□□□□ -0.51
COL18A1-204ENST00000400337 MRPL34Q9BQ48 92 aaKnown RBP11.87□□□□□ -0.51
COL18A1-204ENST00000400337 A0A087WTM6 91 aa11.87□□□□□ -0.51
COL18A1-204ENST00000400337 TLX1NBP0CAT3 122 aa11.87□□□□□ -0.51
COL18A1-204ENST00000400337 CASC10Q5T4H9 136 aa11.86□□□□□ -0.51
COL18A1-204ENST00000400337 C9orf163Q8N9P6 203 aa11.86□□□□□ -0.51
COL18A1-204ENST00000400337 J3QL48 77 aa11.85□□□□□ -0.51
COL18A1-204ENST00000400337 LOC101927531A0A1B0GV80 90 aa11.85□□□□□ -0.51
COL18A1-204ENST00000400337 C8orf87E5RJ46 101 aa11.85□□□□□ -0.51
COL18A1-204ENST00000400337 ZNF861PO60384 105 aa11.84□□□□□ -0.51
COL18A1-204ENST00000400337 ERC2-IT1O76042 136 aa11.84□□□□□ -0.51
COL18A1-204ENST00000400337 ZNF575Q86XF7 245 aa11.83□□□□□ -0.52
COL18A1-204ENST00000400337 CFAP46Q8IYW2 2715 aa11.83□□□□□ -0.52
COL18A1-204ENST00000400337 PLA2G2DQ9UNK4 145 aa11.83□□□□□ -0.52
COL18A1-204ENST00000400337 LAMA3Q16787 3333 aa11.83□□□□□ -0.52
COL18A1-204ENST00000400337 IGLV8-61A0A075B6I0 122 aa11.81□□□□□ -0.52
COL18A1-204ENST00000400337 ATP11AUNQ6ZP68 121 aa11.8□□□□□ -0.52
COL18A1-204ENST00000400337 PRR15Q8IV56 129 aa11.8□□□□□ -0.52
COL18A1-204ENST00000400337 ANAPC11Q9NYG5 84 aa11.79□□□□□ -0.52
COL18A1-204ENST00000400337 MKI67P46013 3256 aaKnown RBP11.78□□□□□ -0.52
COL18A1-204ENST00000400337 APLNQ9ULZ1 77 aa11.78□□□□□ -0.52
COL18A1-204ENST00000400337 DSCR10P59022 87 aa11.78□□□□□ -0.52
COL18A1-204ENST00000400337 C8orf17Q9NRJ1 99 aa11.77□□□□□ -0.52
COL18A1-204ENST00000400337 SSBP3-AS1Q7Z2R9 100 aa11.76□□□□□ -0.53
COL18A1-204ENST00000400337 COA5Q86WW8 74 aa11.76□□□□□ -0.53
COL18A1-204ENST00000400337 CFAP54Q96N23 3096 aa11.75□□□□□ -0.53
COL18A1-204ENST00000400337 CNBPP62633 177 aaKnown RBP11.73□□□□□ -0.53
COL18A1-204ENST00000400337 A0A1B0GVX0 72 aa11.72□□□□□ -0.53
COL18A1-204ENST00000400337 SMR3BP02814 79 aaPredicted RBP11.72□□□□□ -0.53
COL18A1-204ENST00000400337 PSORS1C2Q9UIG4 136 aa11.72□□□□□ -0.53
COL18A1-204ENST00000400337 LINC00304Q8N9R0 145 aa11.72□□□□□ -0.53
COL18A1-204ENST00000400337 A8MUN3 132 aa11.72□□□□□ -0.53
COL18A1-204ENST00000400337 KLKP1Q107X0 134 aa11.72□□□□□ -0.53
COL18A1-204ENST00000400337 MGAQ8IWI9 3026 aa11.71□□□□□ -0.53
COL18A1-204ENST00000400337 BRCA2P51587 3418 aa11.7□□□□□ -0.54
COL18A1-204ENST00000400337 IGLV7-43P04211 117 aa11.69□□□□□ -0.54
COL18A1-204ENST00000400337 OBSCN-AS1Q96MR7 158 aa11.69□□□□□ -0.54
COL18A1-204ENST00000400337 LINC00336Q6ZUF6 198 aa11.69□□□□□ -0.54
COL18A1-204ENST00000400337 A0A1W2PNM2 257 aa11.69□□□□□ -0.54
COL18A1-204ENST00000400337 TRANK1O15050 2925 aa11.69□□□□□ -0.54
COL18A1-204ENST00000400337 SPRR4Q96PI1 79 aa11.66□□□□□ -0.54
COL18A1-204ENST00000400337 LINC01600Q96MT4 127 aa11.65□□□□□ -0.54
COL18A1-204ENST00000400337 A0A0C4DFX4 3053 aa11.65□□□□□ -0.55
COL18A1-204ENST00000400337 C9orf92A6NGG3 77 aa11.64□□□□□ -0.55
COL18A1-204ENST00000400337 FAM104AQ969W3 186 aa11.64□□□□□ -0.55
COL18A1-204ENST00000400337 LAMA2P24043 3122 aaKnown RBP11.63□□□□□ -0.55
COL18A1-204ENST00000400337 H7BZZ5 65 aa11.62□□□□□ -0.55
COL18A1-204ENST00000400337 CYP4F30PQ9H0H9 118 aa11.61□□□□□ -0.55
COL18A1-204ENST00000400337 ZNF292O60281 2723 aa11.6□□□□□ -0.55
COL18A1-204ENST00000400337 IGLV5-37A0A075B6J1 123 aa11.6□□□□□ -0.55
COL18A1-204ENST00000400337 AKAP13Q12802 2813 aa11.6□□□□□ -0.55
COL18A1-204ENST00000400337 WDFY4Q6ZS81 3184 aa11.58□□□□□ -0.56
COL18A1-204ENST00000400337 IGLV5-48A0A075B6I7 105 aa11.57□□□□□ -0.56
COL18A1-204ENST00000400337 UQCR11O14957 56 aa11.56□□□□□ -0.56
COL18A1-204ENST00000400337 PRUNE2Q8WUY3 3088 aa11.55□□□□□ -0.56
COL18A1-204ENST00000400337 CHD6Q8TD26 2715 aa11.54□□□□□ -0.56
COL18A1-204ENST00000400337 TNP2Q05952 138 aa11.51□□□□□ -0.57
COL18A1-204ENST00000400337 WIPF1O43516 503 aa11.5□□□□□ -0.57
COL18A1-204ENST00000400337 TEP1Q99973 2627 aaKnown RBP11.5□□□□□ -0.57
COL18A1-204ENST00000400337 CR1P17927 2039 aa11.48□□□□□ -0.57
COL18A1-204ENST00000400337 UNC80Q8N2C7 3258 aa11.47□□□□□ -0.57
COL18A1-204ENST00000400337 COX6B2Q6YFQ2 88 aa11.47□□□□□ -0.57
COL18A1-204ENST00000400337 TEX15Q9BXT5 2789 aa11.47□□□□□ -0.57
COL18A1-204ENST00000400337 MIR22HGQ0VDD5 57 aa11.46□□□□□ -0.57
COL18A1-204ENST00000400337 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.46□□□□□ -0.57
COL18A1-204ENST00000400337 XIRP2A4UGR9 3374 aa11.43□□□□□ -0.58
COL18A1-204ENST00000400337 SPINT4Q6UDR6 99 aa11.42□□□□□ -0.58
COL18A1-204ENST00000400337 STAB1Q9NY15 2570 aa11.41□□□□□ -0.58
COL18A1-204ENST00000400337 DSPP15924 2871 aaKnown RBP11.39□□□□□ -0.59
COL18A1-204ENST00000400337 SPANXA2-OT1Q8N9U9 137 aa11.39□□□□□ -0.59
COL18A1-204ENST00000400337 Q8NDZ9 215 aa11.39□□□□□ -0.59
COL18A1-204ENST00000400337 Q8N1X5 172 aa11.37□□□□□ -0.59
COL18A1-204ENST00000400337 MAP1AP78559 2803 aaPredicted RBP11.37□□□□□ -0.59
COL18A1-204ENST00000400337 TRIOO75962 3097 aa11.36□□□□□ -0.59
COL18A1-204ENST00000400337 OCR1Q9BZK8 76 aa11.36□□□□□ -0.59
COL18A1-204ENST00000400337 SETXQ7Z333 2677 aaKnown RBP11.34□□□□□ -0.59
COL18A1-204ENST00000400337 COL6A5A8TX70 2615 aa11.33□□□□□ -0.6
COL18A1-204ENST00000400337 CD164Q04900 197 aa11.31□□□□□ -0.6
COL18A1-204ENST00000400337 GCN1Q92616 2671 aaKnown RBP11.29□□□□□ -0.6
COL18A1-204ENST00000400337 VPS13AQ96RL7 3174 aa11.29□□□□□ -0.6
COL18A1-204ENST00000400337 PRR26Q8N8Z3 221 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms