RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SPANXDQ9BXN6 97 aa16.73■□□□□ 0.27
HMGB1-205ENST00000399494 A0A0U1RQV1 116 aa16.72■□□□□ 0.27
HMGB1-205ENST00000399494 SPRR1AP35321 89 aa16.72■□□□□ 0.27
HMGB1-205ENST00000399494 IGLV6-57P01721 117 aa16.71■□□□□ 0.27
HMGB1-205ENST00000399494 COPS9Q8WXC6 57 aa16.71■□□□□ 0.27
HMGB1-205ENST00000399494 CRYGAP11844 174 aa16.69■□□□□ 0.26
HMGB1-205ENST00000399494 TYMSOSQ8TAI1 123 aa16.69■□□□□ 0.26
HMGB1-205ENST00000399494 TRAV23DV6A0A075B6W5 121 aa16.68■□□□□ 0.26
HMGB1-205ENST00000399494 OR13C6PQ8NH95 151 aa16.68■□□□□ 0.26
HMGB1-205ENST00000399494 Q6ZVH6 145 aa16.67■□□□□ 0.26
HMGB1-205ENST00000399494 CBY1Q9Y3M2 126 aa16.67■□□□□ 0.26
HMGB1-205ENST00000399494 KRTAP4-16G5E9R7 235 aaPredicted RBP16.66■□□□□ 0.26
HMGB1-205ENST00000399494 IFITM1P13164 125 aa16.65■□□□□ 0.26
HMGB1-205ENST00000399494 ANAPC11Q9NYG5 84 aa16.65■□□□□ 0.26
HMGB1-205ENST00000399494 LINC00518Q8N0U6 118 aa16.64■□□□□ 0.25
HMGB1-205ENST00000399494 KRTAP9-2Q9BYQ4 174 aa16.63■□□□□ 0.25
HMGB1-205ENST00000399494 B5MCH6 92 aa16.62■□□□□ 0.25
HMGB1-205ENST00000399494 FAM229BQ4G0N7 80 aa16.61■□□□□ 0.25
HMGB1-205ENST00000399494 KRTAP13-2Q52LG2 175 aa16.61■□□□□ 0.25
HMGB1-205ENST00000399494 ZNF706Q9Y5V0 76 aaPredicted RBP16.61■□□□□ 0.25
HMGB1-205ENST00000399494 ZNF73O43830 326 aaPredicted RBP16.6■□□□□ 0.25
HMGB1-205ENST00000399494 MUSTN1Q8IVN3 82 aa16.6■□□□□ 0.25
HMGB1-205ENST00000399494 SMCR5Q8TEV8 140 aa16.59■□□□□ 0.25
HMGB1-205ENST00000399494 PPDPFQ9H3Y8 114 aa16.59■□□□□ 0.25
HMGB1-205ENST00000399494 LCE2AQ5TA79 106 aaPredicted RBP16.58■□□□□ 0.24
HMGB1-205ENST00000399494 Q6ZRX8 168 aa16.58■□□□□ 0.24
HMGB1-205ENST00000399494 HINT1P49773 126 aaPredicted RBP16.57■□□□□ 0.24
HMGB1-205ENST00000399494 JOSD1Q15040 202 aaPredicted RBP16.56■□□□□ 0.24
HMGB1-205ENST00000399494 SPRR4Q96PI1 79 aa16.56■□□□□ 0.24
HMGB1-205ENST00000399494 TMA7Q9Y2S6 64 aaKnown RBP16.56■□□□□ 0.24
HMGB1-205ENST00000399494 FAT4Q6V0I7 4981 aa16.53■□□□□ 0.24
HMGB1-205ENST00000399494 RETNLBQ9BQ08 111 aa16.52■□□□□ 0.24
HMGB1-205ENST00000399494 COX8AP10176 69 aa16.51■□□□□ 0.23
HMGB1-205ENST00000399494 Q9BRP9 147 aa16.51■□□□□ 0.23
HMGB1-205ENST00000399494 PAM16Q9Y3D7 125 aa16.51■□□□□ 0.23
HMGB1-205ENST00000399494 A6NDN8 102 aa16.5■□□□□ 0.23
HMGB1-205ENST00000399494 VAMP8Q9BV40 100 aa16.5■□□□□ 0.23
HMGB1-205ENST00000399494 SPATA45Q537H7 98 aa16.49■□□□□ 0.23
HMGB1-205ENST00000399494 LINC00304Q8N9R0 145 aa16.49■□□□□ 0.23
HMGB1-205ENST00000399494 ERC2-IT1O76042 136 aa16.47■□□□□ 0.23
HMGB1-205ENST00000399494 GAGE2AQ6NT46 116 aa16.45■□□□□ 0.22
HMGB1-205ENST00000399494 C14orf144Q96I85 54 aa16.45■□□□□ 0.22
HMGB1-205ENST00000399494 TRAV13-2A0A0B4J235 113 aa16.44■□□□□ 0.22
HMGB1-205ENST00000399494 C6orf99Q4VX62 202 aa16.44■□□□□ 0.22
HMGB1-205ENST00000399494 HIST1H4GQ99525 98 aa16.44■□□□□ 0.22
HMGB1-205ENST00000399494 DLEU1O43261 78 aa16.43■□□□□ 0.22
HMGB1-205ENST00000399494 MUC17Q685J3 4493 aa16.43■□□□□ 0.22
HMGB1-205ENST00000399494 COX7BP24311 80 aa16.42■□□□□ 0.22
HMGB1-205ENST00000399494 TPRXLQ17RH7 258 aa16.42■□□□□ 0.22
HMGB1-205ENST00000399494 C3orf22Q8N5N4 141 aa16.42■□□□□ 0.22
HMGB1-205ENST00000399494 CDIP1Q9H305 208 aa16.41■□□□□ 0.22
HMGB1-205ENST00000399494 CTAG1AP78358 180 aa16.4■□□□□ 0.22
HMGB1-205ENST00000399494 IGLV7-46A0A075B6I9 117 aa16.39■□□□□ 0.21
HMGB1-205ENST00000399494 A4D1N5 150 aa16.39■□□□□ 0.21
HMGB1-205ENST00000399494 LINC00483Q53H64 154 aa16.39■□□□□ 0.21
HMGB1-205ENST00000399494 DHRS4-AS1Q9P1J3 65 aa16.39■□□□□ 0.21
HMGB1-205ENST00000399494 ELOF1P60002 83 aaKnown RBP16.38■□□□□ 0.21
HMGB1-205ENST00000399494 SLC25A34Q6PIV7 304 aa16.37■□□□□ 0.21
HMGB1-205ENST00000399494 TRBV7-6A0A0J9YX20 115 aa16.34■□□□□ 0.21
HMGB1-205ENST00000399494 PYY3Q5JQD4 70 aa16.34■□□□□ 0.21
HMGB1-205ENST00000399494 ST20-AS1Q8NBB2 130 aa16.33■□□□□ 0.2
HMGB1-205ENST00000399494 A0A1B0GWB2 263 aa16.32■□□□□ 0.2
HMGB1-205ENST00000399494 SMIM11BQ8TCY0 68 aa16.32■□□□□ 0.2
HMGB1-205ENST00000399494 HIGD1BQ9P298 99 aa16.32■□□□□ 0.2
HMGB1-205ENST00000399494 IGLV9-49A0A0B4J1Y8 123 aa16.31■□□□□ 0.2
HMGB1-205ENST00000399494 C12orf57Q99622 126 aa16.31■□□□□ 0.2
HMGB1-205ENST00000399494 MOBPQ13875 183 aa16.26■□□□□ 0.19
HMGB1-205ENST00000399494 C4orf48Q5BLP8 95 aa16.26■□□□□ 0.19
HMGB1-205ENST00000399494 C2orf91Q6ZV80 131 aa16.26■□□□□ 0.19
HMGB1-205ENST00000399494 Q8NBF4 154 aa16.26■□□□□ 0.19
HMGB1-205ENST00000399494 SPAG11AQ6PDA7 123 aa16.24■□□□□ 0.19
HMGB1-205ENST00000399494 VAMP3Q15836 100 aa16.23■□□□□ 0.19
HMGB1-205ENST00000399494 KRTAP9-6A0A140TA67 174 aa16.22■□□□□ 0.19
HMGB1-205ENST00000399494 C9orf153Q5TBE3 101 aa16.22■□□□□ 0.19
HMGB1-205ENST00000399494 TAL2Q16559 108 aa16.21■□□□□ 0.19
HMGB1-205ENST00000399494 NHP2Q9NX24 153 aaKnown RBP16.21■□□□□ 0.19
HMGB1-205ENST00000399494 DEFB105AQ8NG35 78 aa16.2■□□□□ 0.18
HMGB1-205ENST00000399494 SSBP3-AS1Q7Z2R9 100 aa16.19■□□□□ 0.18
HMGB1-205ENST00000399494 RAB37Q96AX2 223 aa16.19■□□□□ 0.18
HMGB1-205ENST00000399494 SPRR1BP22528 89 aa16.18■□□□□ 0.18
HMGB1-205ENST00000399494 SLC25A20O43772 301 aa16.17■□□□□ 0.18
HMGB1-205ENST00000399494 LAMTOR3Q9UHA4 124 aa16.16■□□□□ 0.18
HMGB1-205ENST00000399494 CFC1BP0CG36 223 aa16.15■□□□□ 0.18
HMGB1-205ENST00000399494 CFC1P0CG37 223 aa16.15■□□□□ 0.18
HMGB1-205ENST00000399494 CEND1Q8N111 149 aa16.15■□□□□ 0.18
HMGB1-205ENST00000399494 H7C2G1 150 aa16.14■□□□□ 0.17
HMGB1-205ENST00000399494 FP248Q71RG6 208 aaPredicted RBP16.14■□□□□ 0.17
HMGB1-205ENST00000399494 TEX49A0A1B0GTD5 131 aa16.13■□□□□ 0.17
HMGB1-205ENST00000399494 TMEM238LA0A1B0GVL6 79 aa16.13■□□□□ 0.17
HMGB1-205ENST00000399494 A6NJY4 79 aa16.13■□□□□ 0.17
HMGB1-205ENST00000399494 A0A0B4J2C4 111 aa16.11■□□□□ 0.17
HMGB1-205ENST00000399494 SPINK1P00995 79 aa16.11■□□□□ 0.17
HMGB1-205ENST00000399494 BVES-AS1Q5T3Y7 98 aa16.1■□□□□ 0.17
HMGB1-205ENST00000399494 Q1RN00 199 aa16.09■□□□□ 0.17
HMGB1-205ENST00000399494 KRTAP13-3Q3SY46 172 aa16.09■□□□□ 0.17
HMGB1-205ENST00000399494 LINC00575Q6W349 94 aa16.09■□□□□ 0.17
HMGB1-205ENST00000399494 UQCR10Q9UDW1 63 aa16.08■□□□□ 0.16
HMGB1-205ENST00000399494 IGLV5-48A0A075B6I7 105 aa16.06■□□□□ 0.16
HMGB1-205ENST00000399494 hADV29S1A0JD25 119 aa16.06■□□□□ 0.16
HMGB1-205ENST00000399494 HSD52Q0P140 79 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms