RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 LINC00518Q8N0U6 118 aa12.91□□□□□ -0.34
CLN3-207ENST00000395653 CBY1Q9Y3M2 126 aa12.91□□□□□ -0.34
CLN3-207ENST00000395653 B5MCH6 92 aa12.89□□□□□ -0.35
CLN3-207ENST00000395653 HMCN2Q8NDA2 5059 aa12.89□□□□□ -0.35
CLN3-207ENST00000395653 A0A087X002 238 aa12.88□□□□□ -0.35
CLN3-207ENST00000395653 CRYGAP11844 174 aa12.88□□□□□ -0.35
CLN3-207ENST00000395653 FAM229BQ4G0N7 80 aa12.88□□□□□ -0.35
CLN3-207ENST00000395653 OR13C6PQ8NH95 151 aa12.88□□□□□ -0.35
CLN3-207ENST00000395653 ZNF73O43830 326 aaPredicted RBP12.87□□□□□ -0.35
CLN3-207ENST00000395653 MUSTN1Q8IVN3 82 aa12.87□□□□□ -0.35
CLN3-207ENST00000395653 Q6ZRX8 168 aa12.86□□□□□ -0.35
CLN3-207ENST00000395653 SMCR5Q8TEV8 140 aa12.86□□□□□ -0.35
CLN3-207ENST00000395653 ANAPC11Q9NYG5 84 aa12.86□□□□□ -0.35
CLN3-207ENST00000395653 JOSD1Q15040 202 aaPredicted RBP12.85□□□□□ -0.35
CLN3-207ENST00000395653 ZNF706Q9Y5V0 76 aaPredicted RBP12.85□□□□□ -0.35
CLN3-207ENST00000395653 COX8AP10176 69 aa12.83□□□□□ -0.36
CLN3-207ENST00000395653 SPRR4Q96PI1 79 aa12.83□□□□□ -0.36
CLN3-207ENST00000395653 TYMSOSQ8TAI1 123 aa12.81□□□□□ -0.36
CLN3-207ENST00000395653 Q9BRP9 147 aa12.81□□□□□ -0.36
CLN3-207ENST00000395653 TMA7Q9Y2S6 64 aaKnown RBP12.81□□□□□ -0.36
CLN3-207ENST00000395653 DLEU1O43261 78 aa12.8□□□□□ -0.36
CLN3-207ENST00000395653 HINT1P49773 126 aaPredicted RBP12.8□□□□□ -0.36
CLN3-207ENST00000395653 KRTAP13-2Q52LG2 175 aa12.8□□□□□ -0.36
CLN3-207ENST00000395653 VAMP8Q9BV40 100 aa12.79□□□□□ -0.36
CLN3-207ENST00000395653 SPATA45Q537H7 98 aa12.79□□□□□ -0.36
CLN3-207ENST00000395653 PAM16Q9Y3D7 125 aa12.79□□□□□ -0.36
CLN3-207ENST00000395653 ERC2-IT1O76042 136 aa12.77□□□□□ -0.37
CLN3-207ENST00000395653 A6NDN8 102 aa12.76□□□□□ -0.37
CLN3-207ENST00000395653 TRAV13-2A0A0B4J235 113 aa12.75□□□□□ -0.37
CLN3-207ENST00000395653 C6orf99Q4VX62 202 aa12.74□□□□□ -0.37
CLN3-207ENST00000395653 C14orf144Q96I85 54 aa12.74□□□□□ -0.37
CLN3-207ENST00000395653 LINC00483Q53H64 154 aa12.73□□□□□ -0.37
CLN3-207ENST00000395653 ELOF1P60002 83 aaKnown RBP12.72□□□□□ -0.37
CLN3-207ENST00000395653 PYY3Q5JQD4 70 aa12.72□□□□□ -0.37
CLN3-207ENST00000395653 A4D1N5 150 aa12.71□□□□□ -0.37
CLN3-207ENST00000395653 HIST1H4GQ99525 98 aa12.71□□□□□ -0.37
CLN3-207ENST00000395653 TRBV7-6A0A0J9YX20 115 aa12.71□□□□□ -0.38
CLN3-207ENST00000395653 COX7BP24311 80 aa12.71□□□□□ -0.38
CLN3-207ENST00000395653 GAGE2AQ6NT46 116 aa12.71□□□□□ -0.38
CLN3-207ENST00000395653 SLC25A34Q6PIV7 304 aa12.71□□□□□ -0.38
CLN3-207ENST00000395653 C3orf22Q8N5N4 141 aa12.71□□□□□ -0.38
CLN3-207ENST00000395653 DHRS4-AS1Q9P1J3 65 aa12.7□□□□□ -0.38
CLN3-207ENST00000395653 HIGD1BQ9P298 99 aa12.7□□□□□ -0.38
CLN3-207ENST00000395653 LINC00304Q8N9R0 145 aa12.67□□□□□ -0.38
CLN3-207ENST00000395653 A0A1B0GWB2 263 aa12.65□□□□□ -0.38
CLN3-207ENST00000395653 C2orf91Q6ZV80 131 aa12.65□□□□□ -0.38
CLN3-207ENST00000395653 SMIM11BQ8TCY0 68 aa12.65□□□□□ -0.38
CLN3-207ENST00000395653 ST20-AS1Q8NBB2 130 aa12.63□□□□□ -0.39
CLN3-207ENST00000395653 TSPAN13O95857 204 aa12.62□□□□□ -0.39
CLN3-207ENST00000395653 CTAG1AP78358 180 aa12.62□□□□□ -0.39
CLN3-207ENST00000395653 C12orf57Q99622 126 aa12.6□□□□□ -0.39
CLN3-207ENST00000395653 SPRR1BP22528 89 aa12.59□□□□□ -0.39
CLN3-207ENST00000395653 TAL2Q16559 108 aa12.59□□□□□ -0.39
CLN3-207ENST00000395653 SPAG11AQ6PDA7 123 aa12.58□□□□□ -0.4
CLN3-207ENST00000395653 LRP2P98164 4655 aa12.57□□□□□ -0.4
CLN3-207ENST00000395653 IGLV9-49A0A0B4J1Y8 123 aa12.57□□□□□ -0.4
CLN3-207ENST00000395653 Q8NBF4 154 aa12.57□□□□□ -0.4
CLN3-207ENST00000395653 MOBPQ13875 183 aa12.56□□□□□ -0.4
CLN3-207ENST00000395653 NHP2Q9NX24 153 aaKnown RBP12.56□□□□□ -0.4
CLN3-207ENST00000395653 VAMP3Q15836 100 aa12.55□□□□□ -0.4
CLN3-207ENST00000395653 SSBP3-AS1Q7Z2R9 100 aa12.55□□□□□ -0.4
CLN3-207ENST00000395653 CEND1Q8N111 149 aa12.54□□□□□ -0.4
CLN3-207ENST00000395653 CFC1BP0CG36 223 aa12.54□□□□□ -0.4
CLN3-207ENST00000395653 CFC1P0CG37 223 aa12.54□□□□□ -0.4
CLN3-207ENST00000395653 C4orf48Q5BLP8 95 aa12.53□□□□□ -0.4
CLN3-207ENST00000395653 A0A0B4J2C4 111 aa12.52□□□□□ -0.41
CLN3-207ENST00000395653 RAB37Q96AX2 223 aa12.52□□□□□ -0.41
CLN3-207ENST00000395653 PRR4Q16378 134 aa12.51□□□□□ -0.41
CLN3-207ENST00000395653 IGLV5-48A0A075B6I7 105 aa12.5□□□□□ -0.41
CLN3-207ENST00000395653 TEX49A0A1B0GTD5 131 aa12.5□□□□□ -0.41
CLN3-207ENST00000395653 TMEM238LA0A1B0GVL6 79 aa12.5□□□□□ -0.41
CLN3-207ENST00000395653 A6NJY4 79 aa12.5□□□□□ -0.41
CLN3-207ENST00000395653 SLC25A20O43772 301 aa12.5□□□□□ -0.41
CLN3-207ENST00000395653 C9orf153Q5TBE3 101 aa12.5□□□□□ -0.41
CLN3-207ENST00000395653 BVES-AS1Q5T3Y7 98 aa12.49□□□□□ -0.41
CLN3-207ENST00000395653 LINC00575Q6W349 94 aa12.49□□□□□ -0.41
CLN3-207ENST00000395653 UQCR10Q9UDW1 63 aa12.49□□□□□ -0.41
CLN3-207ENST00000395653 LAMTOR3Q9UHA4 124 aa12.49□□□□□ -0.41
CLN3-207ENST00000395653 SPINK1P00995 79 aa12.48□□□□□ -0.41
CLN3-207ENST00000395653 DEFB105AQ8NG35 78 aa12.48□□□□□ -0.41
CLN3-207ENST00000395653 LINC01547P58512 204 aaPredicted RBP12.47□□□□□ -0.41
CLN3-207ENST00000395653 HSD52Q0P140 79 aa12.47□□□□□ -0.41
CLN3-207ENST00000395653 FXYD2P54710 66 aa12.46□□□□□ -0.41
CLN3-207ENST00000395653 H7C2G1 150 aa12.45□□□□□ -0.42
CLN3-207ENST00000395653 UBR4Q5T4S7 5183 aa12.45□□□□□ -0.42
CLN3-207ENST00000395653 LPAP08519 4548 aa12.45□□□□□ -0.42
CLN3-207ENST00000395653 hADV29S1A0JD25 119 aa12.44□□□□□ -0.42
CLN3-207ENST00000395653 RETNLBQ9BQ08 111 aa12.44□□□□□ -0.42
CLN3-207ENST00000395653 RPS29P62273 56 aaKnown RBP12.43□□□□□ -0.42
CLN3-207ENST00000395653 Q1RN00 199 aa12.43□□□□□ -0.42
CLN3-207ENST00000395653 SMIM29Q86T20 159 aa12.42□□□□□ -0.42
CLN3-207ENST00000395653 PRO1854Q9UHT4 67 aa12.42□□□□□ -0.42
CLN3-207ENST00000395653 Q8N377 158 aa12.4□□□□□ -0.42
CLN3-207ENST00000395653 Q6ZQY7 126 aa12.39□□□□□ -0.43
CLN3-207ENST00000395653 SMIM6P0DI80 62 aa12.37□□□□□ -0.43
CLN3-207ENST00000395653 H0YGX0 51 aa12.37□□□□□ -0.43
CLN3-207ENST00000395653 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.37□□□□□ -0.43
CLN3-207ENST00000395653 PRO1933Q9H354 126 aa12.36□□□□□ -0.43
CLN3-207ENST00000395653 FP248Q71RG6 208 aaPredicted RBP12.33□□□□□ -0.44
CLN3-207ENST00000395653 IGLV7-46A0A075B6I9 117 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms