RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 C15orf53Q8NAA6 179 aa3.17□□□□□ -1.9
USP48-202ENST00000374730 LINC00167Q96N53 147 aa3.17□□□□□ -1.9
USP48-202ENST00000374730 RYR3Q15413 4870 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 NOTCH1P46531 2555 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 PLECQ15149 4684 aaKnown RBP3.16□□□□□ -1.9
USP48-202ENST00000374730 IGLV10-54A0A075B6I4 117 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 TRBV7-7A0A0K0K1E9 115 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 ENHOQ6UWT2 76 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 SDIM1Q6ZPB5 146 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 OR13C6PQ8NH95 151 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 OBSCN-AS1Q96MR7 158 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 TMEM126AQ9H061 195 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 DNAH10Q8IVF4 4471 aa3.16□□□□□ -1.9
USP48-202ENST00000374730 TGP01266 2768 aa3.15□□□□□ -1.9
USP48-202ENST00000374730 TENM3Q9P273 2699 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 LECT2O14960 151 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 KPRPQ5T749 579 aaPredicted RBP3.15□□□□□ -1.91
USP48-202ENST00000374730 Q6ZRP5 223 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 LINC00643Q86TS7 51 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 OCR1Q9BZK8 76 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 IMUPQ9GZP8 106 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 ORMDL1Q9P0S3 153 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 KLK12Q9UKR0 248 aa3.15□□□□□ -1.91
USP48-202ENST00000374730 VPS13DQ5THJ4 4388 aa3.14□□□□□ -1.91
USP48-202ENST00000374730 NDUFV3P56181 108 aaKnown RBP3.14□□□□□ -1.91
USP48-202ENST00000374730 C9orf116Q5BN46 136 aaPredicted RBP3.14□□□□□ -1.91
USP48-202ENST00000374730 TTC32Q5I0X7 151 aa3.14□□□□□ -1.91
USP48-202ENST00000374730 KRTAP26-1Q6PEX3 210 aa3.14□□□□□ -1.91
USP48-202ENST00000374730 UNQ6190/PRO20217Q6UXQ8 127 aa3.14□□□□□ -1.91
USP48-202ENST00000374730 WFDC10BQ8IUB3 73 aa3.14□□□□□ -1.91
USP48-202ENST00000374730 Q8NDZ9 215 aa3.14□□□□□ -1.91
USP48-202ENST00000374730 RETNQ9HD89 108 aa3.14□□□□□ -1.91
USP48-202ENST00000374730 JMJD7-PLA2G4BH0Y9G9 81 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 NCR3O14931 201 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 IGLV6-57P01721 117 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 LINC01556Q5JQF7 62 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 S100A7L2Q5SY68 101 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 C6orf223Q8N319 242 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 C3orf56Q8N813 242 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 Q8N814 137 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 SMCR5Q8TEV8 140 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 ANAPC13Q9BS18 74 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 C6orf48Q9UBA6 75 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 DNAH7Q8WXX0 4024 aa3.13□□□□□ -1.91
USP48-202ENST00000374730 MEGF8Q7Z7M0 2845 aa3.12□□□□□ -1.91
USP48-202ENST00000374730 EPM2AB3EWF7 344 aa3.12□□□□□ -1.91
USP48-202ENST00000374730 H3BQ85 93 aa3.12□□□□□ -1.91
USP48-202ENST00000374730 TMEM256-PLSCR3K7ERE1 68 aa3.12□□□□□ -1.91
USP48-202ENST00000374730 PRR3P79522 188 aaKnown RBP3.12□□□□□ -1.91
USP48-202ENST00000374730 C6orf99Q4VX62 202 aa3.12□□□□□ -1.91
USP48-202ENST00000374730 C9orf129Q5T035 196 aaKnown RBP3.12□□□□□ -1.91
USP48-202ENST00000374730 LINC00575Q6W349 94 aa3.12□□□□□ -1.91
USP48-202ENST00000374730 C15orf56Q8N910 161 aa3.12□□□□□ -1.91
USP48-202ENST00000374730 KMT2CQ8NEZ4 4911 aaKnown RBP3.11□□□□□ -1.91
USP48-202ENST00000374730 DNAH17Q9UFH2 4485 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 DEFB131BA0A096LNP1 70 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 TRBV7-6A0A0J9YX20 115 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 DNAH10OSP0CZ25 163 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 RPL18AQ02543 176 aaKnown RBP3.11□□□□□ -1.91
USP48-202ENST00000374730 ESRGQ1W209 222 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 Q6JHZ5 121 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 Q8N377 158 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 C11orf45Q8TAV5 145 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 LINC00526Q96FQ7 95 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 CAMK2N2Q96S95 79 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 C14orf132Q9NPU4 83 aa3.11□□□□□ -1.91
USP48-202ENST00000374730 OBSCNQ5VST9 7968 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 TRAV23DV6A0A075B6W5 121 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 TRAV10A0A0B4J240 114 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 hADV29S1A0JD25 119 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 NDUFC2-KCTD14E9PQ53 114 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 CCKP06307 115 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 Q6ZRU5 148 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 DIRC1Q969H9 104 aa3.1□□□□□ -1.91
USP48-202ENST00000374730 DNAH6Q9C0G6 4158 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 LOC110117498A0A087WWA1 95 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 TRBV10-3A0A0K0K1G6 114 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 FAM236AA0A1B0GUQ0 79 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 FAM236BA0A1B0GV22 79 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 M0R378 163 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 TLX1NBP0CAT3 122 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 ELOF1P60002 83 aaKnown RBP3.09□□□□□ -1.91
USP48-202ENST00000374730 HIST1H4AP62805 103 aaKnown RBP3.09□□□□□ -1.91
USP48-202ENST00000374730 HIGD2BQ4VC39 106 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.09□□□□□ -1.91
USP48-202ENST00000374730 LINC00336Q6ZUF6 198 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 TM2D3Q9BRN9 247 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 XAGE1AQ9HD64 81 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 LINC00846Q9NV44 126 aa3.09□□□□□ -1.91
USP48-202ENST00000374730 DNAH2Q9P225 4427 aa3.08□□□□□ -1.92
USP48-202ENST00000374730 IGKV2D-24A0A075B6R9 120 aa3.08□□□□□ -1.92
USP48-202ENST00000374730 ZNF73O43830 326 aaPredicted RBP3.08□□□□□ -1.92
USP48-202ENST00000374730 COX7BP24311 80 aa3.08□□□□□ -1.92
USP48-202ENST00000374730 ATP5EP2Q5VTU8 51 aa3.08□□□□□ -1.92
USP48-202ENST00000374730 PRKDCP78527 4128 aaKnown RBP3.08□□□□□ -1.92
USP48-202ENST00000374730 BIRC6Q9NR09 4857 aa3.07□□□□□ -1.92
USP48-202ENST00000374730 CCDC179H3BU77 68 aa3.07□□□□□ -1.92
USP48-202ENST00000374730 K7EIL1 84 aa3.07□□□□□ -1.92
USP48-202ENST00000374730 PDE6GP18545 87 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms