RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 A0A087WYN8 130 aa11.71□□□□□ -0.54
CLN3-206ENST00000360019 EPM2AB3EWF7 344 aa11.71□□□□□ -0.54
CLN3-206ENST00000360019 H3BMG7 143 aa11.71□□□□□ -0.54
CLN3-206ENST00000360019 ZNF73O43830 326 aaPredicted RBP11.71□□□□□ -0.54
CLN3-206ENST00000360019 PHF5AQ7RTV0 110 aaKnown RBP11.71□□□□□ -0.54
CLN3-206ENST00000360019 FAM218AQ96MZ4 157 aa11.71□□□□□ -0.54
CLN3-206ENST00000360019 DIRC1Q969H9 104 aa11.7□□□□□ -0.54
CLN3-206ENST00000360019 LST1O00453 97 aa11.69□□□□□ -0.54
CLN3-206ENST00000360019 APOBP04114 4563 aaKnown RBP11.69□□□□□ -0.54
CLN3-206ENST00000360019 H0YGX0 51 aa11.68□□□□□ -0.54
CLN3-206ENST00000360019 KRTAP10-1P60331 282 aa11.68□□□□□ -0.54
CLN3-206ENST00000360019 ATXN8Q156A1 80 aa11.68□□□□□ -0.54
CLN3-206ENST00000360019 CBY1Q9Y3M2 126 aa11.68□□□□□ -0.54
CLN3-206ENST00000360019 A0A1B0GVY2 172 aa11.67□□□□□ -0.54
CLN3-206ENST00000360019 FAM30AQ9NZY2 134 aa11.67□□□□□ -0.54
CLN3-206ENST00000360019 PRYO14603 147 aa11.66□□□□□ -0.54
CLN3-206ENST00000360019 KRTAP11-1Q8IUC1 163 aa11.66□□□□□ -0.54
CLN3-206ENST00000360019 PLAC8Q9NZF1 115 aa11.66□□□□□ -0.54
CLN3-206ENST00000360019 SPRR1AP35321 89 aa11.65□□□□□ -0.55
CLN3-206ENST00000360019 Q6ZSA8 131 aa11.64□□□□□ -0.55
CLN3-206ENST00000360019 KRTAP4-16G5E9R7 235 aaPredicted RBP11.63□□□□□ -0.55
CLN3-206ENST00000360019 ELOF1P60002 83 aaKnown RBP11.63□□□□□ -0.55
CLN3-206ENST00000360019 MTURNQ8N3F0 131 aa11.63□□□□□ -0.55
CLN3-206ENST00000360019 TRBV7-6A0A0J9YX20 115 aa11.63□□□□□ -0.55
CLN3-206ENST00000360019 UBE2BP63146 152 aa11.63□□□□□ -0.55
CLN3-206ENST00000360019 COX7BP24311 80 aa11.62□□□□□ -0.55
CLN3-206ENST00000360019 REG3GQ6UW15 175 aa11.62□□□□□ -0.55
CLN3-206ENST00000360019 TRACP01848 142 aa11.6□□□□□ -0.55
CLN3-206ENST00000360019 LINC00575Q6W349 94 aa11.6□□□□□ -0.55
CLN3-206ENST00000360019 PRO0461Q9UI25 63 aa11.6□□□□□ -0.55
CLN3-206ENST00000360019 LINC00528Q8N1L1 170 aa11.6□□□□□ -0.55
CLN3-206ENST00000360019 C9JAW5 83 aa11.59□□□□□ -0.55
CLN3-206ENST00000360019 CIRBP-AS1Q8TBR5 109 aa11.59□□□□□ -0.55
CLN3-206ENST00000360019 ETDCA0A1B0GVM5 59 aa11.58□□□□□ -0.56
CLN3-206ENST00000360019 B5MCH6 92 aa11.58□□□□□ -0.56
CLN3-206ENST00000360019 SCXQ7RTU7 201 aa11.58□□□□□ -0.56
CLN3-206ENST00000360019 A0A1B0GX51 115 aa11.56□□□□□ -0.56
CLN3-206ENST00000360019 SMCPP49901 116 aaPredicted RBP11.56□□□□□ -0.56
CLN3-206ENST00000360019 Q6ZRX8 168 aa11.56□□□□□ -0.56
CLN3-206ENST00000360019 hADV29S1A0JD25 119 aa11.56□□□□□ -0.56
CLN3-206ENST00000360019 HAMPP81172 84 aa11.56□□□□□ -0.56
CLN3-206ENST00000360019 VPS13BQ7Z7G8 4022 aa11.55□□□□□ -0.56
CLN3-206ENST00000360019 F8W1H4 67 aa11.54□□□□□ -0.56
CLN3-206ENST00000360019 SLC25A20O43772 301 aa11.54□□□□□ -0.56
CLN3-206ENST00000360019 DNAL4O96015 105 aa11.54□□□□□ -0.56
CLN3-206ENST00000360019 Q9BRP9 147 aa11.53□□□□□ -0.56
CLN3-206ENST00000360019 FAT1Q14517 4588 aa11.53□□□□□ -0.56
CLN3-206ENST00000360019 FAM19A1Q7Z5A9 133 aa11.52□□□□□ -0.57
CLN3-206ENST00000360019 PRLHP81277 87 aa11.51□□□□□ -0.57
CLN3-206ENST00000360019 SNCGO76070 127 aa11.5□□□□□ -0.57
CLN3-206ENST00000360019 INAFM2P0DMQ5 153 aa11.5□□□□□ -0.57
CLN3-206ENST00000360019 PSORS1C2Q9UIG4 136 aa11.5□□□□□ -0.57
CLN3-206ENST00000360019 EPPK1P58107 5090 aaKnown RBP11.49□□□□□ -0.57
CLN3-206ENST00000360019 BCE1O60756 84 aa11.49□□□□□ -0.57
CLN3-206ENST00000360019 ANKRD29Q8N6D5 301 aa11.49□□□□□ -0.57
CLN3-206ENST00000360019 H3BT86 120 aa11.49□□□□□ -0.57
CLN3-206ENST00000360019 Q6ZQY7 126 aa11.49□□□□□ -0.57
CLN3-206ENST00000360019 DHRS4-AS1Q9P1J3 65 aa11.49□□□□□ -0.57
CLN3-206ENST00000360019 SMCR5Q8TEV8 140 aa11.48□□□□□ -0.57
CLN3-206ENST00000360019 SRRM2Q9UQ35 2752 aaKnown RBP11.48□□□□□ -0.57
CLN3-206ENST00000360019 BAALC-AS2P0C853 105 aa11.47□□□□□ -0.57
CLN3-206ENST00000360019 LINC01600Q96MT4 127 aa11.47□□□□□ -0.57
CLN3-206ENST00000360019 ORMDL1Q9P0S3 153 aa11.47□□□□□ -0.57
CLN3-206ENST00000360019 H0Y9J4 135 aa11.46□□□□□ -0.58
CLN3-206ENST00000360019 ERC2-IT1O76042 136 aa11.46□□□□□ -0.58
CLN3-206ENST00000360019 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.46□□□□□ -0.58
CLN3-206ENST00000360019 KRTAP13-1Q8IUC0 172 aa11.45□□□□□ -0.58
CLN3-206ENST00000360019 UBE2AP49459 152 aa11.44□□□□□ -0.58
CLN3-206ENST00000360019 ETDBQ3ZM63 59 aa11.44□□□□□ -0.58
CLN3-206ENST00000360019 C1orf137Q5JT78 98 aa11.43□□□□□ -0.58
CLN3-206ENST00000360019 HIGD2AQ9BW72 106 aa11.43□□□□□ -0.58
CLN3-206ENST00000360019 HSPG2P98160 4391 aa11.43□□□□□ -0.58
CLN3-206ENST00000360019 XGP55808 180 aa11.42□□□□□ -0.58
CLN3-206ENST00000360019 ST20-AS1Q8NBB2 130 aa11.41□□□□□ -0.58
CLN3-206ENST00000360019 RYR1P21817 5038 aa11.4□□□□□ -0.59
CLN3-206ENST00000360019 TMEM256-PLSCR3K7ERE1 68 aa11.39□□□□□ -0.59
CLN3-206ENST00000360019 LINC01547P58512 204 aaPredicted RBP11.39□□□□□ -0.59
CLN3-206ENST00000360019 OCIAD2Q56VL3 154 aa11.39□□□□□ -0.59
CLN3-206ENST00000360019 TEN1Q86WV5 123 aa11.39□□□□□ -0.59
CLN3-206ENST00000360019 DEFB105AQ8NG35 78 aa11.36□□□□□ -0.59
CLN3-206ENST00000360019 IGLV5-48A0A075B6I7 105 aa11.35□□□□□ -0.59
CLN3-206ENST00000360019 IGLV7-43P04211 117 aa11.35□□□□□ -0.59
CLN3-206ENST00000360019 Q8N377 158 aa11.35□□□□□ -0.59
CLN3-206ENST00000360019 TEX49A0A1B0GTD5 131 aa11.35□□□□□ -0.59
CLN3-206ENST00000360019 ZNF861PO60384 105 aa11.35□□□□□ -0.59
CLN3-206ENST00000360019 H3BQ85 93 aa11.34□□□□□ -0.59
CLN3-206ENST00000360019 GHRHP01286 108 aa11.34□□□□□ -0.59
CLN3-206ENST00000360019 A0A1B0GV72 72 aa11.31□□□□□ -0.6
CLN3-206ENST00000360019 KIAA1109Q2LD37 5005 aa11.31□□□□□ -0.6
CLN3-206ENST00000360019 PPDPFLQ8WWR9 84 aa11.3□□□□□ -0.6
CLN3-206ENST00000360019 OBSCN-AS1Q96MR7 158 aa11.3□□□□□ -0.6
CLN3-206ENST00000360019 SMR3BP02814 79 aaPredicted RBP11.29□□□□□ -0.6
CLN3-206ENST00000360019 C3orf22Q8N5N4 141 aa11.29□□□□□ -0.6
CLN3-206ENST00000360019 LAMTOR3Q9UHA4 124 aa11.29□□□□□ -0.6
CLN3-206ENST00000360019 NDUFV3P56181 108 aaKnown RBP11.28□□□□□ -0.6
CLN3-206ENST00000360019 GAGE2AQ6NT46 116 aa11.26□□□□□ -0.61
CLN3-206ENST00000360019 SMIM29Q86T20 159 aa11.25□□□□□ -0.61
CLN3-206ENST00000360019 JMJD7-PLA2G4BH0Y9G9 81 aa11.25□□□□□ -0.61
CLN3-206ENST00000360019 SPRR1BP22528 89 aa11.25□□□□□ -0.61
CLN3-206ENST00000360019 RPL37AP61513 92 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms