RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 IGLV6-57P01721 117 aa10.29□□□□□ -0.76
PTPRF-201ENST00000359947 ZNF861PO60384 105 aa10.28□□□□□ -0.76
PTPRF-201ENST00000359947 SMCPP49901 116 aaPredicted RBP10.28□□□□□ -0.76
PTPRF-201ENST00000359947 LOC110117498A0A087WWA1 95 aa10.27□□□□□ -0.76
PTPRF-201ENST00000359947 A8MWP4 228 aa10.27□□□□□ -0.76
PTPRF-201ENST00000359947 SSBP3-AS1Q7Z2R9 100 aa10.27□□□□□ -0.77
PTPRF-201ENST00000359947 MRPL34Q9BQ48 92 aaKnown RBP10.26□□□□□ -0.77
PTPRF-201ENST00000359947 PCNTO95613 3336 aa10.26□□□□□ -0.77
PTPRF-201ENST00000359947 A0A096LNT2 108 aa10.25□□□□□ -0.77
PTPRF-201ENST00000359947 APLNQ9ULZ1 77 aa10.25□□□□□ -0.77
PTPRF-201ENST00000359947 ATRQ13535 2644 aa10.25□□□□□ -0.77
PTPRF-201ENST00000359947 C9orf129Q5T035 196 aaKnown RBP10.23□□□□□ -0.77
PTPRF-201ENST00000359947 IGFL1Q6UW32 110 aa10.23□□□□□ -0.77
PTPRF-201ENST00000359947 A0A1B0GW54 56 aa10.23□□□□□ -0.77
PTPRF-201ENST00000359947 CASC10Q5T4H9 136 aa10.23□□□□□ -0.77
PTPRF-201ENST00000359947 GIG44P09565 113 aaPredicted RBP10.22□□□□□ -0.77
PTPRF-201ENST00000359947 LINC00528Q8N1L1 170 aa10.21□□□□□ -0.77
PTPRF-201ENST00000359947 KCNQ1DNQ9H478 68 aa10.21□□□□□ -0.78
PTPRF-201ENST00000359947 IGLV5-37A0A075B6J1 123 aa10.21□□□□□ -0.78
PTPRF-201ENST00000359947 LINC01554Q52M75 96 aa10.2□□□□□ -0.78
PTPRF-201ENST00000359947 MAST4O15021 2626 aa10.2□□□□□ -0.78
PTPRF-201ENST00000359947 LINC00336Q6ZUF6 198 aa10.2□□□□□ -0.78
PTPRF-201ENST00000359947 PSORS1C2Q9UIG4 136 aa10.2□□□□□ -0.78
PTPRF-201ENST00000359947 LOC101927531A0A1B0GV80 90 aa10.19□□□□□ -0.78
PTPRF-201ENST00000359947 RPS28P62857 69 aaKnown RBP10.19□□□□□ -0.78
PTPRF-201ENST00000359947 IGLV7-43P04211 117 aa10.18□□□□□ -0.78
PTPRF-201ENST00000359947 LITAFQ99732 161 aa10.17□□□□□ -0.78
PTPRF-201ENST00000359947 LINC01600Q96MT4 127 aa10.17□□□□□ -0.78
PTPRF-201ENST00000359947 C9orf163Q8N9P6 203 aa10.17□□□□□ -0.78
PTPRF-201ENST00000359947 H3BPC8 53 aa10.16□□□□□ -0.78
PTPRF-201ENST00000359947 KRTAP1-3Q8IUG1 177 aa10.16□□□□□ -0.78
PTPRF-201ENST00000359947 PRR34Q9NV39 138 aa10.16□□□□□ -0.78
PTPRF-201ENST00000359947 RBM12B-AS1Q9P1G2 102 aa10.14□□□□□ -0.79
PTPRF-201ENST00000359947 C8orf17Q9NRJ1 99 aa10.14□□□□□ -0.79
PTPRF-201ENST00000359947 EIF4EBP3O60516 100 aaPredicted RBP10.13□□□□□ -0.79
PTPRF-201ENST00000359947 PRO0461Q9UI25 63 aa10.12□□□□□ -0.79
PTPRF-201ENST00000359947 Q8N377 158 aa10.12□□□□□ -0.79
PTPRF-201ENST00000359947 KLK9Q2XQG4 91 aa10.12□□□□□ -0.79
PTPRF-201ENST00000359947 TNP2Q05952 138 aa10.11□□□□□ -0.79
PTPRF-201ENST00000359947 A0A1B0GVX0 72 aa10.11□□□□□ -0.79
PTPRF-201ENST00000359947 FLNAP21333 2647 aaKnown RBP10.11□□□□□ -0.79
PTPRF-201ENST00000359947 ITPR3Q14573 2671 aa10.1□□□□□ -0.79
PTPRF-201ENST00000359947 A8MUN3 132 aa10.09□□□□□ -0.79
PTPRF-201ENST00000359947 HELZ2Q9BYK8 2649 aaKnown RBP10.09□□□□□ -0.79
PTPRF-201ENST00000359947 COA5Q86WW8 74 aa10.09□□□□□ -0.79
PTPRF-201ENST00000359947 KRTAP1-1Q07627 177 aa10.08□□□□□ -0.8
PTPRF-201ENST00000359947 ZNF575Q86XF7 245 aa10.08□□□□□ -0.8
PTPRF-201ENST00000359947 PRR15Q8IV56 129 aa10.07□□□□□ -0.8
PTPRF-201ENST00000359947 CRIPTQ9P021 101 aa10.07□□□□□ -0.8
PTPRF-201ENST00000359947 ERC2-IT1O76042 136 aa10.06□□□□□ -0.8
PTPRF-201ENST00000359947 CFAP46Q8IYW2 2715 aa10.06□□□□□ -0.8
PTPRF-201ENST00000359947 M0R2T5 61 aa10.06□□□□□ -0.8
PTPRF-201ENST00000359947 A0A0D9SG42 100 aa10.05□□□□□ -0.8
PTPRF-201ENST00000359947 UQCR11O14957 56 aa10.05□□□□□ -0.8
PTPRF-201ENST00000359947 Q8N1X5 172 aa10.04□□□□□ -0.8
PTPRF-201ENST00000359947 SPRR4Q96PI1 79 aa10.03□□□□□ -0.8
PTPRF-201ENST00000359947 CR1P17927 2039 aa10.01□□□□□ -0.81
PTPRF-201ENST00000359947 TLX1NBP0CAT3 122 aa10.01□□□□□ -0.81
PTPRF-201ENST00000359947 LINC00612Q8N6U2 182 aa10.01□□□□□ -0.81
PTPRF-201ENST00000359947 MIR22HGQ0VDD5 57 aa10□□□□□ -0.81
PTPRF-201ENST00000359947 Q6ZSA8 131 aa9.99□□□□□ -0.81
PTPRF-201ENST00000359947 IGLV5-48A0A075B6I7 105 aa9.99□□□□□ -0.81
PTPRF-201ENST00000359947 CNBPP62633 177 aaKnown RBP9.98□□□□□ -0.81
PTPRF-201ENST00000359947 CYP4F30PQ9H0H9 118 aa9.97□□□□□ -0.81
PTPRF-201ENST00000359947 PRR26Q8N8Z3 221 aa9.97□□□□□ -0.81
PTPRF-201ENST00000359947 PLA2G2DQ9UNK4 145 aa9.97□□□□□ -0.81
PTPRF-201ENST00000359947 FLG2Q5D862 2391 aaPredicted RBP9.95□□□□□ -0.82
PTPRF-201ENST00000359947 IGLV7-46A0A075B6I9 117 aa9.94□□□□□ -0.82
PTPRF-201ENST00000359947 CENPEQ02224 2701 aa9.94□□□□□ -0.82
PTPRF-201ENST00000359947 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.92□□□□□ -0.82
PTPRF-201ENST00000359947 CFAP54Q96N23 3096 aa9.91□□□□□ -0.82
PTPRF-201ENST00000359947 CHD7Q9P2D1 2997 aa9.9□□□□□ -0.83
PTPRF-201ENST00000359947 MKI67P46013 3256 aaKnown RBP9.9□□□□□ -0.83
PTPRF-201ENST00000359947 AKAP13Q12802 2813 aa9.88□□□□□ -0.83
PTPRF-201ENST00000359947 LAMA3Q16787 3333 aa9.88□□□□□ -0.83
PTPRF-201ENST00000359947 BRCA2P51587 3418 aa9.86□□□□□ -0.83
PTPRF-201ENST00000359947 A0A1W2PNM2 257 aa9.85□□□□□ -0.83
PTPRF-201ENST00000359947 RANBP2P49792 3224 aaKnown RBP9.84□□□□□ -0.83
PTPRF-201ENST00000359947 FAM104AQ969W3 186 aa9.82□□□□□ -0.84
PTPRF-201ENST00000359947 TEX15Q9BXT5 2789 aa9.82□□□□□ -0.84
PTPRF-201ENST00000359947 TEP1Q99973 2627 aaKnown RBP9.82□□□□□ -0.84
PTPRF-201ENST00000359947 SETXQ7Z333 2677 aaKnown RBP9.8□□□□□ -0.84
PTPRF-201ENST00000359947 KTN1-AS1Q86SY8 53 aa9.8□□□□□ -0.84
PTPRF-201ENST00000359947 KLKP1Q107X0 134 aa9.79□□□□□ -0.84
PTPRF-201ENST00000359947 STAB1Q9NY15 2570 aa9.79□□□□□ -0.84
PTPRF-201ENST00000359947 CD164Q04900 197 aa9.79□□□□□ -0.84
PTPRF-201ENST00000359947 CDC42SE1Q9NRR8 79 aa9.78□□□□□ -0.84
PTPRF-201ENST00000359947 XIRP2A4UGR9 3374 aa9.78□□□□□ -0.84
PTPRF-201ENST00000359947 H7BZZ5 65 aa9.76□□□□□ -0.85
PTPRF-201ENST00000359947 CAMK2N1Q7Z7J9 78 aa9.76□□□□□ -0.85
PTPRF-201ENST00000359947 LUZP6Q538Z0 58 aa9.75□□□□□ -0.85
PTPRF-201ENST00000359947 LAMA2P24043 3122 aaKnown RBP9.75□□□□□ -0.85
PTPRF-201ENST00000359947 MGAQ8IWI9 3026 aa9.75□□□□□ -0.85
PTPRF-201ENST00000359947 LCA10Q71F78 164 aa9.75□□□□□ -0.85
PTPRF-201ENST00000359947 PRUNE2Q8WUY3 3088 aa9.75□□□□□ -0.85
PTPRF-201ENST00000359947 CHD6Q8TD26 2715 aa9.74□□□□□ -0.85
PTPRF-201ENST00000359947 Q5VSD8 79 aa9.69□□□□□ -0.86
PTPRF-201ENST00000359947 A0A0C4DFX4 3053 aa9.69□□□□□ -0.86
PTPRF-201ENST00000359947 WDFY4Q6ZS81 3184 aa9.66□□□□□ -0.86
PTPRF-201ENST00000359947 PLAC8Q9NZF1 115 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms