RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 C9orf92A6NGG3 77 aa11.86□□□□□ -0.51
COL18A1-202ENST00000355480 OBSCN-AS1Q96MR7 158 aa11.85□□□□□ -0.51
COL18A1-202ENST00000355480 SSBP3-AS1Q7Z2R9 100 aa11.85□□□□□ -0.51
COL18A1-202ENST00000355480 C9orf129Q5T035 196 aaKnown RBP11.85□□□□□ -0.51
COL18A1-202ENST00000355480 LINC01600Q96MT4 127 aa11.85□□□□□ -0.51
COL18A1-202ENST00000355480 GIG44P09565 113 aaPredicted RBP11.84□□□□□ -0.51
COL18A1-202ENST00000355480 C8orf17Q9NRJ1 99 aa11.84□□□□□ -0.51
COL18A1-202ENST00000355480 EPG5Q9HCE0 2579 aa11.83□□□□□ -0.52
COL18A1-202ENST00000355480 RPS28P62857 69 aaKnown RBP11.82□□□□□ -0.52
COL18A1-202ENST00000355480 COA5Q86WW8 74 aa11.82□□□□□ -0.52
COL18A1-202ENST00000355480 C9orf163Q8N9P6 203 aa11.81□□□□□ -0.52
COL18A1-202ENST00000355480 EIF4EBP3O60516 100 aaPredicted RBP11.81□□□□□ -0.52
COL18A1-202ENST00000355480 PRR15Q8IV56 129 aa11.8□□□□□ -0.52
COL18A1-202ENST00000355480 A0A1B0GVX0 72 aa11.79□□□□□ -0.52
COL18A1-202ENST00000355480 ANAPC11Q9NYG5 84 aa11.79□□□□□ -0.52
COL18A1-202ENST00000355480 Q8N377 158 aa11.79□□□□□ -0.52
COL18A1-202ENST00000355480 A0A0G2JQZ4 141 aa11.78□□□□□ -0.52
COL18A1-202ENST00000355480 A0A1W2PNN7 141 aa11.78□□□□□ -0.52
COL18A1-202ENST00000355480 LINC00612Q8N6U2 182 aa11.78□□□□□ -0.52
COL18A1-202ENST00000355480 SPINT4Q6UDR6 99 aa11.76□□□□□ -0.53
COL18A1-202ENST00000355480 TLX1NBP0CAT3 122 aa11.76□□□□□ -0.53
COL18A1-202ENST00000355480 ERC2-IT1O76042 136 aa11.76□□□□□ -0.53
COL18A1-202ENST00000355480 IGLV7-43P04211 117 aa11.75□□□□□ -0.53
COL18A1-202ENST00000355480 APLNQ9ULZ1 77 aa11.74□□□□□ -0.53
COL18A1-202ENST00000355480 PLA2G2DQ9UNK4 145 aa11.73□□□□□ -0.53
COL18A1-202ENST00000355480 LINC00336Q6ZUF6 198 aa11.73□□□□□ -0.53
COL18A1-202ENST00000355480 FLNBO75369 2602 aaKnown RBP11.72□□□□□ -0.53
COL18A1-202ENST00000355480 PSORS1C2Q9UIG4 136 aa11.72□□□□□ -0.53
COL18A1-202ENST00000355480 UQCR11O14957 56 aa11.72□□□□□ -0.53
COL18A1-202ENST00000355480 CASC10Q5T4H9 136 aa11.71□□□□□ -0.54
COL18A1-202ENST00000355480 A8MUN3 132 aa11.7□□□□□ -0.54
COL18A1-202ENST00000355480 IGLV5-37A0A075B6J1 123 aa11.69□□□□□ -0.54
COL18A1-202ENST00000355480 USP24Q9UPU5 2620 aa11.66□□□□□ -0.54
COL18A1-202ENST00000355480 HECTD1Q9ULT8 2610 aa11.66□□□□□ -0.54
COL18A1-202ENST00000355480 ZNF575Q86XF7 245 aa11.66□□□□□ -0.54
COL18A1-202ENST00000355480 MGAM2Q2M2H8 2515 aa11.66□□□□□ -0.54
COL18A1-202ENST00000355480 SPRR4Q96PI1 79 aa11.65□□□□□ -0.54
COL18A1-202ENST00000355480 CNBPP62633 177 aaKnown RBP11.64□□□□□ -0.55
COL18A1-202ENST00000355480 RBM12B-AS1Q9P1G2 102 aa11.64□□□□□ -0.55
COL18A1-202ENST00000355480 KRTAP1-3Q8IUG1 177 aa11.64□□□□□ -0.55
COL18A1-202ENST00000355480 CYP4F30PQ9H0H9 118 aa11.64□□□□□ -0.55
COL18A1-202ENST00000355480 CRIPTQ9P021 101 aa11.61□□□□□ -0.55
COL18A1-202ENST00000355480 MIR22HGQ0VDD5 57 aa11.61□□□□□ -0.55
COL18A1-202ENST00000355480 KRTAP1-1Q07627 177 aa11.58□□□□□ -0.56
COL18A1-202ENST00000355480 KLKP1Q107X0 134 aa11.55□□□□□ -0.56
COL18A1-202ENST00000355480 LINC01554Q52M75 96 aa11.55□□□□□ -0.56
COL18A1-202ENST00000355480 A0A1W2PNM2 257 aa11.54□□□□□ -0.56
COL18A1-202ENST00000355480 DNAH12Q6ZR08 3092 aa11.54□□□□□ -0.56
COL18A1-202ENST00000355480 Q8N1X5 172 aa11.51□□□□□ -0.57
COL18A1-202ENST00000355480 IGLV5-48A0A075B6I7 105 aa11.5□□□□□ -0.57
COL18A1-202ENST00000355480 TNP2Q05952 138 aa11.5□□□□□ -0.57
COL18A1-202ENST00000355480 A0A0D9SG42 100 aa11.47□□□□□ -0.57
COL18A1-202ENST00000355480 FAM104AQ969W3 186 aa11.47□□□□□ -0.57
COL18A1-202ENST00000355480 UTRNP46939 3433 aa11.46□□□□□ -0.57
COL18A1-202ENST00000355480 H7BZZ5 65 aa11.43□□□□□ -0.58
COL18A1-202ENST00000355480 Q6ZSA8 131 aa11.41□□□□□ -0.58
COL18A1-202ENST00000355480 PRRC2CQ9Y520 2896 aaKnown RBP11.38□□□□□ -0.59
COL18A1-202ENST00000355480 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.37□□□□□ -0.59
COL18A1-202ENST00000355480 ATRQ13535 2644 aa11.37□□□□□ -0.59
COL18A1-202ENST00000355480 IGLV7-46A0A075B6I9 117 aa11.36□□□□□ -0.59
COL18A1-202ENST00000355480 PRR26Q8N8Z3 221 aa11.36□□□□□ -0.59
COL18A1-202ENST00000355480 CDC42SE1Q9NRR8 79 aa11.36□□□□□ -0.59
COL18A1-202ENST00000355480 SPANXA2-OT1Q8N9U9 137 aa11.36□□□□□ -0.59
COL18A1-202ENST00000355480 BPTFQ12830 3046 aa11.35□□□□□ -0.59
COL18A1-202ENST00000355480 CD164Q04900 197 aa11.34□□□□□ -0.59
COL18A1-202ENST00000355480 MAST4O15021 2626 aa11.33□□□□□ -0.6
COL18A1-202ENST00000355480 FLNAP21333 2647 aaKnown RBP11.29□□□□□ -0.6
COL18A1-202ENST00000355480 M0R2T5 61 aa11.26□□□□□ -0.61
COL18A1-202ENST00000355480 CR1P17927 2039 aa11.23□□□□□ -0.61
COL18A1-202ENST00000355480 ITPR3Q14573 2671 aa11.22□□□□□ -0.61
COL18A1-202ENST00000355480 FAM229BQ4G0N7 80 aa11.21□□□□□ -0.61
COL18A1-202ENST00000355480 CAMK2N1Q7Z7J9 78 aa11.2□□□□□ -0.62
COL18A1-202ENST00000355480 HELZ2Q9BYK8 2649 aaKnown RBP11.2□□□□□ -0.62
COL18A1-202ENST00000355480 OCR1Q9BZK8 76 aa11.19□□□□□ -0.62
COL18A1-202ENST00000355480 WIPF1O43516 503 aa11.19□□□□□ -0.62
COL18A1-202ENST00000355480 CEP350Q5VT06 3117 aa11.19□□□□□ -0.62
COL18A1-202ENST00000355480 PLAC8Q9NZF1 115 aa11.18□□□□□ -0.62
COL18A1-202ENST00000355480 KTN1-AS1Q86SY8 53 aa11.17□□□□□ -0.62
COL18A1-202ENST00000355480 HRES1P13985 223 aa11.16□□□□□ -0.62
COL18A1-202ENST00000355480 C5orf42Q9H799 3197 aa11.14□□□□□ -0.63
COL18A1-202ENST00000355480 LCA10Q71F78 164 aa11.14□□□□□ -0.63
COL18A1-202ENST00000355480 A0A1B0GU33 70 aa11.12□□□□□ -0.63
COL18A1-202ENST00000355480 ZCCHC13Q8WW36 166 aaKnown RBP11.1□□□□□ -0.63
COL18A1-202ENST00000355480 Q1T7F1 81 aa11.07□□□□□ -0.64
COL18A1-202ENST00000355480 LUZP6Q538Z0 58 aa11.07□□□□□ -0.64
COL18A1-202ENST00000355480 MMP24-AS1A0A0U1RRL7 71 aa11.06□□□□□ -0.64
COL18A1-202ENST00000355480 PCNTO95613 3336 aa11.06□□□□□ -0.64
COL18A1-202ENST00000355480 CSAG1Q6PB30 78 aa11.05□□□□□ -0.64
COL18A1-202ENST00000355480 CFAP46Q8IYW2 2715 aa11.03□□□□□ -0.64
COL18A1-202ENST00000355480 SPRR1AP35321 89 aa11.03□□□□□ -0.64
COL18A1-202ENST00000355480 Q8N9P0 234 aaPredicted RBP11.03□□□□□ -0.64
COL18A1-202ENST00000355480 S4R3F8 94 aa11.03□□□□□ -0.64
COL18A1-202ENST00000355480 Q8NDZ9 215 aa11.03□□□□□ -0.64
COL18A1-202ENST00000355480 STAB1Q9NY15 2570 aa11.01□□□□□ -0.65
COL18A1-202ENST00000355480 LINC00483Q53H64 154 aa10.99□□□□□ -0.65
COL18A1-202ENST00000355480 Q5VSD8 79 aa10.97□□□□□ -0.65
COL18A1-202ENST00000355480 KRTAP1-5Q9BYS1 174 aa10.96□□□□□ -0.65
COL18A1-202ENST00000355480 Q5W150 140 aa10.94□□□□□ -0.66
COL18A1-202ENST00000355480 SPINK7P58062 85 aa10.93□□□□□ -0.66
COL18A1-202ENST00000355480 SPRR1BP22528 89 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms