RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 KRTAP4-16G5E9R7 235 aaPredicted RBP13.44□□□□□ -0.26
SHMT1-203ENST00000354098 RPL28P46779 137 aaKnown RBP13.44□□□□□ -0.26
SHMT1-203ENST00000354098 A6NDN8 102 aa13.43□□□□□ -0.26
SHMT1-203ENST00000354098 MYCBP2O75592 4640 aa13.42□□□□□ -0.26
SHMT1-203ENST00000354098 C12orf57Q99622 126 aa13.42□□□□□ -0.26
SHMT1-203ENST00000354098 DIRC1Q969H9 104 aa13.41□□□□□ -0.26
SHMT1-203ENST00000354098 H0Y9J4 135 aa13.4□□□□□ -0.26
SHMT1-203ENST00000354098 ZNF73O43830 326 aaPredicted RBP13.4□□□□□ -0.26
SHMT1-203ENST00000354098 TAL2Q16559 108 aa13.4□□□□□ -0.26
SHMT1-203ENST00000354098 ETDCA0A1B0GVM5 59 aa13.39□□□□□ -0.27
SHMT1-203ENST00000354098 CEND1Q8N111 149 aa13.39□□□□□ -0.27
SHMT1-203ENST00000354098 TRAV13-2A0A0B4J235 113 aa13.38□□□□□ -0.27
SHMT1-203ENST00000354098 B5MCH6 92 aa13.37□□□□□ -0.27
SHMT1-203ENST00000354098 LRP1Q07954 4544 aaKnown RBP13.36□□□□□ -0.27
SHMT1-203ENST00000354098 HIGD2AQ9BW72 106 aa13.35□□□□□ -0.27
SHMT1-203ENST00000354098 CBY1Q9Y3M2 126 aa13.35□□□□□ -0.27
SHMT1-203ENST00000354098 CFC1BP0CG36 223 aa13.34□□□□□ -0.27
SHMT1-203ENST00000354098 CFC1P0CG37 223 aa13.34□□□□□ -0.27
SHMT1-203ENST00000354098 HSD52Q0P140 79 aa13.34□□□□□ -0.27
SHMT1-203ENST00000354098 FXYD2P54710 66 aa13.34□□□□□ -0.27
SHMT1-203ENST00000354098 C6orf99Q4VX62 202 aa13.33□□□□□ -0.28
SHMT1-203ENST00000354098 Q6ZRX8 168 aa13.32□□□□□ -0.28
SHMT1-203ENST00000354098 SMIM11BQ8TCY0 68 aa13.31□□□□□ -0.28
SHMT1-203ENST00000354098 SMCR5Q8TEV8 140 aa13.31□□□□□ -0.28
SHMT1-203ENST00000354098 Q9BRP9 147 aa13.31□□□□□ -0.28
SHMT1-203ENST00000354098 KRTAP29-1A8MX34 341 aaPredicted RBP13.3□□□□□ -0.28
SHMT1-203ENST00000354098 KRTAP1-4P0C5Y4 121 aa13.3□□□□□ -0.28
SHMT1-203ENST00000354098 RPL13AP40429 203 aaKnown RBP13.3□□□□□ -0.28
SHMT1-203ENST00000354098 OXTP01178 125 aa13.29□□□□□ -0.28
SHMT1-203ENST00000354098 HINT1P49773 126 aaPredicted RBP13.29□□□□□ -0.28
SHMT1-203ENST00000354098 FAT3Q8TDW7 4589 aa13.29□□□□□ -0.28
SHMT1-203ENST00000354098 RAB37Q96AX2 223 aa13.28□□□□□ -0.28
SHMT1-203ENST00000354098 LINC01600Q96MT4 127 aa13.28□□□□□ -0.28
SHMT1-203ENST00000354098 A0A0B4J2C4 111 aa13.27□□□□□ -0.29
SHMT1-203ENST00000354098 TMEM238LA0A1B0GVL6 79 aa13.27□□□□□ -0.29
SHMT1-203ENST00000354098 A6NJY4 79 aa13.27□□□□□ -0.29
SHMT1-203ENST00000354098 ERC2-IT1O76042 136 aa13.27□□□□□ -0.29
SHMT1-203ENST00000354098 COX7BP24311 80 aa13.25□□□□□ -0.29
SHMT1-203ENST00000354098 ELOF1P60002 83 aaKnown RBP13.25□□□□□ -0.29
SHMT1-203ENST00000354098 TSTD3H0UI37 97 aa13.24□□□□□ -0.29
SHMT1-203ENST00000354098 H7C2G1 150 aa13.24□□□□□ -0.29
SHMT1-203ENST00000354098 ANAPC11Q9NYG5 84 aa13.24□□□□□ -0.29
SHMT1-203ENST00000354098 CTAG1AP78358 180 aa13.24□□□□□ -0.29
SHMT1-203ENST00000354098 NHP2Q9NX24 153 aaKnown RBP13.23□□□□□ -0.29
SHMT1-203ENST00000354098 TRBV7-6A0A0J9YX20 115 aa13.22□□□□□ -0.29
SHMT1-203ENST00000354098 MT1HL1P0DM35 61 aa13.21□□□□□ -0.29
SHMT1-203ENST00000354098 BVES-AS1Q5T3Y7 98 aa13.21□□□□□ -0.29
SHMT1-203ENST00000354098 J3QL48 77 aa13.21□□□□□ -0.3
SHMT1-203ENST00000354098 PRR26Q8N8Z3 221 aa13.21□□□□□ -0.3
SHMT1-203ENST00000354098 PRO1854Q9UHT4 67 aa13.21□□□□□ -0.3
SHMT1-203ENST00000354098 A0A1B0GWB2 263 aa13.2□□□□□ -0.3
SHMT1-203ENST00000354098 K7ERJ3 54 aa13.2□□□□□ -0.3
SHMT1-203ENST00000354098 SPRR4Q96PI1 79 aa13.2□□□□□ -0.3
SHMT1-203ENST00000354098 DHRS4-AS1Q9P1J3 65 aa13.18□□□□□ -0.3
SHMT1-203ENST00000354098 A0A087X002 238 aa13.17□□□□□ -0.3
SHMT1-203ENST00000354098 KRTAP10-8P60410 259 aa13.17□□□□□ -0.3
SHMT1-203ENST00000354098 ST20-AS1Q8NBB2 130 aa13.16□□□□□ -0.3
SHMT1-203ENST00000354098 VAMP3Q15836 100 aa13.15□□□□□ -0.3
SHMT1-203ENST00000354098 ZNF706Q9Y5V0 76 aaPredicted RBP13.15□□□□□ -0.3
SHMT1-203ENST00000354098 Q1RN00 199 aa13.15□□□□□ -0.31
SHMT1-203ENST00000354098 GAGE2AQ6NT46 116 aa13.13□□□□□ -0.31
SHMT1-203ENST00000354098 DMBT1Q9UGM3 2413 aaPredicted RBP13.12□□□□□ -0.31
SHMT1-203ENST00000354098 TNXBP22105 4242 aa13.12□□□□□ -0.31
SHMT1-203ENST00000354098 CRYGAP11844 174 aa13.12□□□□□ -0.31
SHMT1-203ENST00000354098 M0R143 59 aa13.11□□□□□ -0.31
SHMT1-203ENST00000354098 FAM229BQ4G0N7 80 aa13.11□□□□□ -0.31
SHMT1-203ENST00000354098 KRTAP13-2Q52LG2 175 aa13.1□□□□□ -0.31
SHMT1-203ENST00000354098 LINC00575Q6W349 94 aa13.1□□□□□ -0.31
SHMT1-203ENST00000354098 LINC00483Q53H64 154 aa13.09□□□□□ -0.31
SHMT1-203ENST00000354098 TSPAN13O95857 204 aa13.07□□□□□ -0.32
SHMT1-203ENST00000354098 TRIAP1O43715 76 aa13.06□□□□□ -0.32
SHMT1-203ENST00000354098 SLC25A20O43772 301 aa13.05□□□□□ -0.32
SHMT1-203ENST00000354098 C3orf22Q8N5N4 141 aa13.05□□□□□ -0.32
SHMT1-203ENST00000354098 DEFB105AQ8NG35 78 aa13.05□□□□□ -0.32
SHMT1-203ENST00000354098 hADV29S1A0JD25 119 aa13.04□□□□□ -0.32
SHMT1-203ENST00000354098 TYMSOSQ8TAI1 123 aa13.03□□□□□ -0.32
SHMT1-203ENST00000354098 H0YGX0 51 aa13.02□□□□□ -0.32
SHMT1-203ENST00000354098 BATFQ16520 125 aa13.02□□□□□ -0.32
SHMT1-203ENST00000354098 FAM218AQ96MZ4 157 aa13.02□□□□□ -0.32
SHMT1-203ENST00000354098 PSMB2P49721 201 aa13.02□□□□□ -0.33
SHMT1-203ENST00000354098 SPRR1BP22528 89 aa13.01□□□□□ -0.33
SHMT1-203ENST00000354098 LINC01547P58512 204 aaPredicted RBP13.01□□□□□ -0.33
SHMT1-203ENST00000354098 Q6ZQY7 126 aa12.99□□□□□ -0.33
SHMT1-203ENST00000354098 IGLV5-48A0A075B6I7 105 aa12.98□□□□□ -0.33
SHMT1-203ENST00000354098 IGLV9-49A0A0B4J1Y8 123 aa12.98□□□□□ -0.33
SHMT1-203ENST00000354098 TEX49A0A1B0GTD5 131 aa12.97□□□□□ -0.33
SHMT1-203ENST00000354098 CLEC2BQ92478 149 aa12.97□□□□□ -0.33
SHMT1-203ENST00000354098 HERC1Q15751 4861 aa12.96□□□□□ -0.33
SHMT1-203ENST00000354098 Q8N377 158 aa12.96□□□□□ -0.34
SHMT1-203ENST00000354098 COX6CP09669 75 aa12.94□□□□□ -0.34
SHMT1-203ENST00000354098 NAA38Q9BRA0 125 aaKnown RBP12.94□□□□□ -0.34
SHMT1-203ENST00000354098 MOBPQ13875 183 aa12.93□□□□□ -0.34
SHMT1-203ENST00000354098 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.93□□□□□ -0.34
SHMT1-203ENST00000354098 SMIM29Q86T20 159 aa12.93□□□□□ -0.34
SHMT1-203ENST00000354098 LAMTOR3Q9UHA4 124 aa12.91□□□□□ -0.34
SHMT1-203ENST00000354098 SNCGO76070 127 aa12.9□□□□□ -0.34
SHMT1-203ENST00000354098 SCGB1C2P0DMR2 95 aa12.9□□□□□ -0.34
SHMT1-203ENST00000354098 C9orf153Q5TBE3 101 aa12.9□□□□□ -0.34
SHMT1-203ENST00000354098 A0A1B0GX51 115 aa12.89□□□□□ -0.35
SHMT1-203ENST00000354098 PCP4L1A6NKN8 68 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms