RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 WFDC10AQ9H1F0 79 aa12.17□□□□□ -0.46
SMPD1-201ENST00000342245 KCNQ1DNQ9H478 68 aa12.17□□□□□ -0.46
SMPD1-201ENST00000342245 PRR34Q9NV39 138 aa12.17□□□□□ -0.46
SMPD1-201ENST00000342245 PRR4Q16378 134 aa12.16□□□□□ -0.46
SMPD1-201ENST00000342245 ST20-AS1Q8NBB2 130 aa12.16□□□□□ -0.46
SMPD1-201ENST00000342245 A0A1W2PNM2 257 aa12.16□□□□□ -0.46
SMPD1-201ENST00000342245 H3BPC8 53 aa12.16□□□□□ -0.46
SMPD1-201ENST00000342245 LINC00208Q96KT6 92 aa12.16□□□□□ -0.46
SMPD1-201ENST00000342245 Q75L30 129 aa12.15□□□□□ -0.46
SMPD1-201ENST00000342245 A6NN06 94 aa12.14□□□□□ -0.47
SMPD1-201ENST00000342245 PTPN13Q12923 2485 aa12.14□□□□□ -0.47
SMPD1-201ENST00000342245 IGLV1-51P01701 117 aa12.13□□□□□ -0.47
SMPD1-201ENST00000342245 C1orf137Q5JT78 98 aa12.13□□□□□ -0.47
SMPD1-201ENST00000342245 K7EQZ3 153 aa12.13□□□□□ -0.47
SMPD1-201ENST00000342245 DHRS4-AS1Q9P1J3 65 aa12.13□□□□□ -0.47
SMPD1-201ENST00000342245 LRRK2Q5S007 2527 aa12.12□□□□□ -0.47
SMPD1-201ENST00000342245 NOTCH3Q9UM47 2321 aa12.12□□□□□ -0.47
SMPD1-201ENST00000342245 DEFB113Q30KQ7 82 aa12.12□□□□□ -0.47
SMPD1-201ENST00000342245 PRR15LQ9BU68 103 aa12.12□□□□□ -0.47
SMPD1-201ENST00000342245 DEFB105AQ8NG35 78 aa12.12□□□□□ -0.47
SMPD1-201ENST00000342245 LELP1Q5T871 98 aa12.11□□□□□ -0.47
SMPD1-201ENST00000342245 SPTSSBQ8NFR3 76 aa12.11□□□□□ -0.47
SMPD1-201ENST00000342245 TEX15Q9BXT5 2789 aa12.11□□□□□ -0.47
SMPD1-201ENST00000342245 CAMK2N2Q96S95 79 aa12.11□□□□□ -0.47
SMPD1-201ENST00000342245 USP24Q9UPU5 2620 aa12.11□□□□□ -0.47
SMPD1-201ENST00000342245 ABCA12Q86UK0 2595 aa12.1□□□□□ -0.47
SMPD1-201ENST00000342245 TNP2Q05952 138 aa12.1□□□□□ -0.47
SMPD1-201ENST00000342245 ZNF469Q96JG9 3925 aaPredicted RBP12.1□□□□□ -0.47
SMPD1-201ENST00000342245 LOC101927531A0A1B0GV80 90 aa12.1□□□□□ -0.47
SMPD1-201ENST00000342245 LCA10Q71F78 164 aa12.09□□□□□ -0.47
SMPD1-201ENST00000342245 NAV2Q8IVL1 2488 aa12.09□□□□□ -0.47
SMPD1-201ENST00000342245 AKAP9Q99996 3911 aa12.06□□□□□ -0.48
SMPD1-201ENST00000342245 C7orf65Q6ZTY9 151 aa12.06□□□□□ -0.48
SMPD1-201ENST00000342245 KRTAP1-3Q8IUG1 177 aa12.06□□□□□ -0.48
SMPD1-201ENST00000342245 A6NED7 52 aa12.05□□□□□ -0.48
SMPD1-201ENST00000342245 CDC42SE1Q9NRR8 79 aa12.05□□□□□ -0.48
SMPD1-201ENST00000342245 UBR5O95071 2799 aaPredicted RBP12.05□□□□□ -0.48
SMPD1-201ENST00000342245 X6R8D5 127 aa12.05□□□□□ -0.48
SMPD1-201ENST00000342245 APOC4P55056 127 aa12.02□□□□□ -0.48
SMPD1-201ENST00000342245 MYO9AB2RTY4 2548 aa12.02□□□□□ -0.49
SMPD1-201ENST00000342245 PRB2P02812 416 aaPredicted RBP12.02□□□□□ -0.49
SMPD1-201ENST00000342245 NKAPP1Q8N9T2 125 aa12.01□□□□□ -0.49
SMPD1-201ENST00000342245 TLN2Q9Y4G6 2542 aa12.01□□□□□ -0.49
SMPD1-201ENST00000342245 C4orf48Q5BLP8 95 aa12□□□□□ -0.49
SMPD1-201ENST00000342245 Q6ZRX8 168 aa12□□□□□ -0.49
SMPD1-201ENST00000342245 NBPF19A0A087WUL8 3843 aa12□□□□□ -0.49
SMPD1-201ENST00000342245 SONP18583 2426 aaKnown RBP11.99□□□□□ -0.49
SMPD1-201ENST00000342245 DNAJC9-AS1A6NH13 148 aa11.99□□□□□ -0.49
SMPD1-201ENST00000342245 CUBNO60494 3623 aa11.99□□□□□ -0.49
SMPD1-201ENST00000342245 H0Y9P7 68 aa11.97□□□□□ -0.49
SMPD1-201ENST00000342245 EPG5Q9HCE0 2579 aa11.96□□□□□ -0.49
SMPD1-201ENST00000342245 CHD6Q8TD26 2715 aa11.96□□□□□ -0.49
SMPD1-201ENST00000342245 IGKV2D-24A0A075B6R9 120 aa11.96□□□□□ -0.49
SMPD1-201ENST00000342245 APCP25054 2843 aa11.96□□□□□ -0.5
SMPD1-201ENST00000342245 C7orf33Q8WU49 177 aa11.94□□□□□ -0.5
SMPD1-201ENST00000342245 WFDC13Q8IUB5 93 aa11.93□□□□□ -0.5
SMPD1-201ENST00000342245 C9orf163Q8N9P6 203 aa11.93□□□□□ -0.5
SMPD1-201ENST00000342245 ITPR3Q14573 2671 aa11.92□□□□□ -0.5
SMPD1-201ENST00000342245 KRTAP29-1A8MX34 341 aaPredicted RBP11.92□□□□□ -0.5
SMPD1-201ENST00000342245 PLA2G2DQ9UNK4 145 aa11.92□□□□□ -0.5
SMPD1-201ENST00000342245 COA5Q86WW8 74 aa11.91□□□□□ -0.5
SMPD1-201ENST00000342245 C11orf45Q8TAV5 145 aa11.91□□□□□ -0.5
SMPD1-201ENST00000342245 KRTAP4-16G5E9R7 235 aaPredicted RBP11.91□□□□□ -0.5
SMPD1-201ENST00000342245 NF1P21359 2839 aa11.9□□□□□ -0.5
SMPD1-201ENST00000342245 SPRR1AP35321 89 aa11.89□□□□□ -0.51
SMPD1-201ENST00000342245 MOBPQ13875 183 aa11.89□□□□□ -0.51
SMPD1-201ENST00000342245 C15orf56Q8N910 161 aa11.89□□□□□ -0.51
SMPD1-201ENST00000342245 LINC01558Q9Y6Z2 57 aa11.89□□□□□ -0.51
SMPD1-201ENST00000342245 WFDC10BQ8IUB3 73 aa11.88□□□□□ -0.51
SMPD1-201ENST00000342245 IGLV7-46A0A075B6I9 117 aa11.88□□□□□ -0.51
SMPD1-201ENST00000342245 C8orf87E5RJ46 101 aa11.88□□□□□ -0.51
SMPD1-201ENST00000342245 KRTAP26-1Q6PEX3 210 aa11.87□□□□□ -0.51
SMPD1-201ENST00000342245 CCDC168Q8NDH2 2452 aa11.87□□□□□ -0.51
SMPD1-201ENST00000342245 CASC2Q6XLA1 102 aa11.85□□□□□ -0.51
SMPD1-201ENST00000342245 PLAC8Q9NZF1 115 aa11.85□□□□□ -0.51
SMPD1-201ENST00000342245 IGLV5-37A0A075B6J1 123 aa11.84□□□□□ -0.51
SMPD1-201ENST00000342245 SERTAD4-AS1Q5TG53 156 aa11.84□□□□□ -0.51
SMPD1-201ENST00000342245 LINC00476Q8WZB0 136 aa11.84□□□□□ -0.51
SMPD1-201ENST00000342245 FLNAP21333 2647 aaKnown RBP11.84□□□□□ -0.51
SMPD1-201ENST00000342245 NIPBLQ6KC79 2804 aaeCLIP11.83□□□□□ -0.51
SMPD1-201ENST00000342245 IGLV1-50A0A075B6I6 118 aa11.83□□□□□ -0.52
SMPD1-201ENST00000342245 KRTAP1-1Q07627 177 aa11.83□□□□□ -0.52
SMPD1-201ENST00000342245 DEFB116Q30KQ4 102 aa11.83□□□□□ -0.52
SMPD1-201ENST00000342245 SETD2Q9BYW2 2564 aaPredicted RBP11.83□□□□□ -0.52
SMPD1-201ENST00000342245 SETXQ7Z333 2677 aaKnown RBP11.83□□□□□ -0.52
SMPD1-201ENST00000342245 TLX1NBP0CAT3 122 aa11.81□□□□□ -0.52
SMPD1-201ENST00000342245 SPART-AS1P0CW21 52 aa11.81□□□□□ -0.52
SMPD1-201ENST00000342245 ANK3Q12955 4377 aaKnown RBP11.81□□□□□ -0.52
SMPD1-201ENST00000342245 JMJD1CQ15652 2540 aa11.79□□□□□ -0.52
SMPD1-201ENST00000342245 DEFB4AO15263 64 aa11.79□□□□□ -0.52
SMPD1-201ENST00000342245 ACANP16112 2415 aa11.78□□□□□ -0.52
SMPD1-201ENST00000342245 IGFL1Q6UW32 110 aa11.78□□□□□ -0.52
SMPD1-201ENST00000342245 IGLV8-61A0A075B6I0 122 aa11.78□□□□□ -0.52
SMPD1-201ENST00000342245 HTN3P15516 51 aa11.78□□□□□ -0.52
SMPD1-201ENST00000342245 TENM4Q6N022 2769 aa11.76□□□□□ -0.53
SMPD1-201ENST00000342245 CNBPP62633 177 aaKnown RBP11.76□□□□□ -0.53
SMPD1-201ENST00000342245 DEFB135Q30KP9 77 aa11.76□□□□□ -0.53
SMPD1-201ENST00000342245 RPL37AP8A6NKH3 93 aa11.76□□□□□ -0.53
SMPD1-201ENST00000342245 A0A087WSZ3 146 aa11.75□□□□□ -0.53
SMPD1-201ENST00000342245 PDZD2O15018 2839 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms