RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NBDYA0A0U1RRE5 68 aa6.84□□□□□ -1.31
CCDC88A-202ENST00000336838 HECTD1Q9ULT8 2610 aa6.84□□□□□ -1.31
CCDC88A-202ENST00000336838 NBEAL1Q6ZS30 2694 aa6.84□□□□□ -1.31
CCDC88A-202ENST00000336838 LINC00588Q9Y4M8 146 aa6.84□□□□□ -1.31
CCDC88A-202ENST00000336838 COA5Q86WW8 74 aa6.84□□□□□ -1.31
CCDC88A-202ENST00000336838 MDFIQ99750 246 aa6.84□□□□□ -1.31
CCDC88A-202ENST00000336838 CEP350Q5VT06 3117 aa6.84□□□□□ -1.32
CCDC88A-202ENST00000336838 IGLV5-37A0A075B6J1 123 aa6.83□□□□□ -1.32
CCDC88A-202ENST00000336838 CHD7Q9P2D1 2997 aa6.83□□□□□ -1.32
CCDC88A-202ENST00000336838 A0A096LNT2 108 aa6.83□□□□□ -1.32
CCDC88A-202ENST00000336838 MRPL34Q9BQ48 92 aaKnown RBP6.83□□□□□ -1.32
CCDC88A-202ENST00000336838 IGKV2D-30A0A075B6S6 120 aa6.83□□□□□ -1.32
CCDC88A-202ENST00000336838 IGKV2-30P06310 120 aa6.83□□□□□ -1.32
CCDC88A-202ENST00000336838 CD164Q04900 197 aa6.83□□□□□ -1.32
CCDC88A-202ENST00000336838 IGLV5-48A0A075B6I7 105 aa6.82□□□□□ -1.32
CCDC88A-202ENST00000336838 UQCR11O14957 56 aa6.82□□□□□ -1.32
CCDC88A-202ENST00000336838 Q1T7F1 81 aa6.81□□□□□ -1.32
CCDC88A-202ENST00000336838 C15orf56Q8N910 161 aa6.81□□□□□ -1.32
CCDC88A-202ENST00000336838 FLG2Q5D862 2391 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-202ENST00000336838 ST20-AS1Q8NBB2 130 aa6.81□□□□□ -1.32
CCDC88A-202ENST00000336838 GIG44P09565 113 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-202ENST00000336838 IGFL1Q6UW32 110 aa6.8□□□□□ -1.32
CCDC88A-202ENST00000336838 CHD9Q3L8U1 2897 aa6.79□□□□□ -1.32
CCDC88A-202ENST00000336838 A0A1B0GVX0 72 aa6.79□□□□□ -1.32
CCDC88A-202ENST00000336838 CNBPP62633 177 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-202ENST00000336838 Q8N377 158 aa6.79□□□□□ -1.32
CCDC88A-202ENST00000336838 KTN1-AS1Q86SY8 53 aa6.79□□□□□ -1.32
CCDC88A-202ENST00000336838 C19orf73Q9NVV2 129 aa6.79□□□□□ -1.32
CCDC88A-202ENST00000336838 UNC79Q9P2D8 2635 aa6.78□□□□□ -1.32
CCDC88A-202ENST00000336838 EIF4EBP3O60516 100 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-202ENST00000336838 SSBP3-AS1Q7Z2R9 100 aa6.78□□□□□ -1.32
CCDC88A-202ENST00000336838 SERTAD4-AS1Q5TG53 156 aa6.78□□□□□ -1.32
CCDC88A-202ENST00000336838 C5orf42Q9H799 3197 aa6.78□□□□□ -1.32
CCDC88A-202ENST00000336838 RTL8CO15255 209 aa6.77□□□□□ -1.33
CCDC88A-202ENST00000336838 ZNF575Q86XF7 245 aa6.77□□□□□ -1.33
CCDC88A-202ENST00000336838 SPRR4Q96PI1 79 aa6.76□□□□□ -1.33
CCDC88A-202ENST00000336838 C8orf17Q9NRJ1 99 aa6.76□□□□□ -1.33
CCDC88A-202ENST00000336838 SPINK1P00995 79 aa6.76□□□□□ -1.33
CCDC88A-202ENST00000336838 C9orf129Q5T035 196 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-202ENST00000336838 PHF5AQ7RTV0 110 aaKnown RBP6.75□□□□□ -1.33
CCDC88A-202ENST00000336838 OCR1Q9BZK8 76 aa6.75□□□□□ -1.33
CCDC88A-202ENST00000336838 LINC00336Q6ZUF6 198 aa6.74□□□□□ -1.33
CCDC88A-202ENST00000336838 TEP1Q99973 2627 aaKnown RBP6.74□□□□□ -1.33
CCDC88A-202ENST00000336838 TEX15Q9BXT5 2789 aa6.74□□□□□ -1.33
CCDC88A-202ENST00000336838 NOTCH1P46531 2555 aa6.73□□□□□ -1.33
CCDC88A-202ENST00000336838 ZNF861PO60384 105 aa6.73□□□□□ -1.33
CCDC88A-202ENST00000336838 CDC42SE1Q9NRR8 79 aa6.72□□□□□ -1.33
CCDC88A-202ENST00000336838 PCNTO95613 3336 aa6.72□□□□□ -1.33
CCDC88A-202ENST00000336838 FAM168BA1KXE4 195 aa6.72□□□□□ -1.33
CCDC88A-202ENST00000336838 MAP1AP78559 2803 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-202ENST00000336838 SPACA4Q8TDM5 124 aa6.72□□□□□ -1.33
CCDC88A-202ENST00000336838 A8MUN3 132 aa6.71□□□□□ -1.34
CCDC88A-202ENST00000336838 TYMSOSQ8TAI1 123 aa6.71□□□□□ -1.34
CCDC88A-202ENST00000336838 SETXQ7Z333 2677 aaKnown RBP6.71□□□□□ -1.34
CCDC88A-202ENST00000336838 C9orf163Q8N9P6 203 aa6.69□□□□□ -1.34
CCDC88A-202ENST00000336838 ITPR2Q14571 2701 aa6.69□□□□□ -1.34
CCDC88A-202ENST00000336838 MIR22HGQ0VDD5 57 aa6.69□□□□□ -1.34
CCDC88A-202ENST00000336838 LCA10Q71F78 164 aa6.66□□□□□ -1.34
CCDC88A-202ENST00000336838 FAM104AQ969W3 186 aa6.66□□□□□ -1.34
CCDC88A-202ENST00000336838 STAB1Q9NY15 2570 aa6.66□□□□□ -1.34
CCDC88A-202ENST00000336838 A0A0C4DFX4 3053 aa6.66□□□□□ -1.34
CCDC88A-202ENST00000336838 Q75L30 129 aa6.65□□□□□ -1.34
CCDC88A-202ENST00000336838 A0A1W2PNM2 257 aa6.64□□□□□ -1.35
CCDC88A-202ENST00000336838 COL6A5A8TX70 2615 aa6.64□□□□□ -1.35
CCDC88A-202ENST00000336838 Q96NJ1 140 aa6.63□□□□□ -1.35
CCDC88A-202ENST00000336838 KRTAP24-1Q3LI83 254 aa6.63□□□□□ -1.35
CCDC88A-202ENST00000336838 IGLV7-46A0A075B6I9 117 aa6.62□□□□□ -1.35
CCDC88A-202ENST00000336838 CHTF8P0CG12 524 aa6.62□□□□□ -1.35
CCDC88A-202ENST00000336838 PLA2G1BP04054 148 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-202ENST00000336838 IGSF10Q6WRI0 2623 aa6.6□□□□□ -1.35
CCDC88A-202ENST00000336838 DSPP15924 2871 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-202ENST00000336838 CFAP54Q96N23 3096 aa6.6□□□□□ -1.35
CCDC88A-202ENST00000336838 LINC00304Q8N9R0 145 aa6.6□□□□□ -1.35
CCDC88A-202ENST00000336838 IGLV8-61A0A075B6I0 122 aa6.59□□□□□ -1.35
CCDC88A-202ENST00000336838 KRTAP10-11P60412 298 aa6.59□□□□□ -1.35
CCDC88A-202ENST00000336838 MGAQ8IWI9 3026 aa6.59□□□□□ -1.36
CCDC88A-202ENST00000336838 STAB2Q8WWQ8 2551 aa6.58□□□□□ -1.36
CCDC88A-202ENST00000336838 DSCR10P59022 87 aa6.58□□□□□ -1.36
CCDC88A-202ENST00000336838 A0A087WTM6 91 aa6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 IGLV7-43P04211 117 aa6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 LAMA2P24043 3122 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 CRIPTQ9P021 101 aa6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 NSD1Q96L73 2696 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 UTRNP46939 3433 aa6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 SPRR1AP35321 89 aa6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 WWC2-AS2Q96NR7 200 aa6.57□□□□□ -1.36
CCDC88A-202ENST00000336838 FAM229BQ4G0N7 80 aa6.56□□□□□ -1.36
CCDC88A-202ENST00000336838 K7EIL1 84 aa6.55□□□□□ -1.36
CCDC88A-202ENST00000336838 KRTAP1-3Q8IUG1 177 aa6.55□□□□□ -1.36
CCDC88A-202ENST00000336838 FLNCQ14315 2725 aa6.54□□□□□ -1.36
CCDC88A-202ENST00000336838 Q5XG85 94 aa6.53□□□□□ -1.36
CCDC88A-202ENST00000336838 HTTP42858 3142 aa6.53□□□□□ -1.36
CCDC88A-202ENST00000336838 SPINT4Q6UDR6 99 aa6.52□□□□□ -1.37
CCDC88A-202ENST00000336838 APCP25054 2843 aa6.52□□□□□ -1.37
CCDC88A-202ENST00000336838 SPRR1BP22528 89 aa6.52□□□□□ -1.37
CCDC88A-202ENST00000336838 PSORS1C2Q9UIG4 136 aa6.52□□□□□ -1.37
CCDC88A-202ENST00000336838 ASB16-AS1Q495Z4 193 aa6.51□□□□□ -1.37
CCDC88A-202ENST00000336838 NBEAL2Q6ZNJ1 2754 aa6.5□□□□□ -1.37
CCDC88A-202ENST00000336838 LINC01558Q9Y6Z2 57 aa6.5□□□□□ -1.37
CCDC88A-202ENST00000336838 APLNQ9ULZ1 77 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms