RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 COX6CP09669 75 aa17.11■□□□□ 0.33
CTDNEP1-201ENST00000318988 VAMP3Q15836 100 aa17.11■□□□□ 0.33
CTDNEP1-201ENST00000318988 SCGB1C2P0DMR2 95 aa17.1■□□□□ 0.33
CTDNEP1-201ENST00000318988 LRP1BQ9NZR2 4599 aa17.1■□□□□ 0.33
CTDNEP1-201ENST00000318988 DYNC1H1Q14204 4646 aaKnown RBP17.09■□□□□ 0.33
CTDNEP1-201ENST00000318988 TRIAP1O43715 76 aa17.09■□□□□ 0.33
CTDNEP1-201ENST00000318988 ETDCA0A1B0GVM5 59 aa17.07■□□□□ 0.32
CTDNEP1-201ENST00000318988 KRTAP11-1Q8IUC1 163 aa17.07■□□□□ 0.32
CTDNEP1-201ENST00000318988 XGP55808 180 aa17.06■□□□□ 0.32
CTDNEP1-201ENST00000318988 LYRM7Q5U5X0 104 aa17.05■□□□□ 0.32
CTDNEP1-201ENST00000318988 SPRR1AP35321 89 aa17.04■□□□□ 0.32
CTDNEP1-201ENST00000318988 TRBV7-6A0A0J9YX20 115 aa17.03■□□□□ 0.32
CTDNEP1-201ENST00000318988 COX7BP24311 80 aa17.03■□□□□ 0.32
CTDNEP1-201ENST00000318988 H0YGX0 51 aa17.02■□□□□ 0.32
CTDNEP1-201ENST00000318988 PSORS1C2Q9UIG4 136 aa17.02■□□□□ 0.32
CTDNEP1-201ENST00000318988 A0A1W2PPM0 123 aa17.01■□□□□ 0.31
CTDNEP1-201ENST00000318988 FABP2P12104 132 aa17.01■□□□□ 0.31
CTDNEP1-201ENST00000318988 FAM19A1Q7Z5A9 133 aa17.01■□□□□ 0.31
CTDNEP1-201ENST00000318988 BCE1O60756 84 aa16.99■□□□□ 0.31
CTDNEP1-201ENST00000318988 ELOF1P60002 83 aaKnown RBP16.98■□□□□ 0.31
CTDNEP1-201ENST00000318988 C1orf137Q5JT78 98 aa16.98■□□□□ 0.31
CTDNEP1-201ENST00000318988 KRTAP4-16G5E9R7 235 aaPredicted RBP16.97■□□□□ 0.31
CTDNEP1-201ENST00000318988 B5MCH6 92 aa16.96■□□□□ 0.31
CTDNEP1-201ENST00000318988 UBE2AP49459 152 aa16.96■□□□□ 0.31
CTDNEP1-201ENST00000318988 CDK2AP2O75956 126 aa16.96■□□□□ 0.3
CTDNEP1-201ENST00000318988 SNCGO76070 127 aa16.95■□□□□ 0.3
CTDNEP1-201ENST00000318988 Q6ZRX8 168 aa16.95■□□□□ 0.3
CTDNEP1-201ENST00000318988 SLC25A20O43772 301 aa16.94■□□□□ 0.3
CTDNEP1-201ENST00000318988 CLEC2BQ92478 149 aa16.93■□□□□ 0.3
CTDNEP1-201ENST00000318988 SMR3BP02814 79 aaPredicted RBP16.92■□□□□ 0.3
CTDNEP1-201ENST00000318988 PRLHP81277 87 aa16.91■□□□□ 0.3
CTDNEP1-201ENST00000318988 LINC00528Q8N1L1 170 aa16.91■□□□□ 0.3
CTDNEP1-201ENST00000318988 TRBV20-1A0A075B6N2 111 aa16.9■□□□□ 0.3
CTDNEP1-201ENST00000318988 LINC00575Q6W349 94 aa16.9■□□□□ 0.3
CTDNEP1-201ENST00000318988 DHRS4-AS1Q9P1J3 65 aa16.89■□□□□ 0.29
CTDNEP1-201ENST00000318988 H0Y9J4 135 aa16.88■□□□□ 0.29
CTDNEP1-201ENST00000318988 INAFM2P0DMQ5 153 aa16.88■□□□□ 0.29
CTDNEP1-201ENST00000318988 ATXN8Q156A1 80 aa16.88■□□□□ 0.29
CTDNEP1-201ENST00000318988 SPCS1Q9Y6A9 102 aa16.88■□□□□ 0.29
CTDNEP1-201ENST00000318988 APOBP04114 4563 aaKnown RBP16.87■□□□□ 0.29
CTDNEP1-201ENST00000318988 TCL1BO95988 128 aa16.87■□□□□ 0.29
CTDNEP1-201ENST00000318988 RPL37AP61513 92 aaKnown RBP16.87■□□□□ 0.29
CTDNEP1-201ENST00000318988 hADV29S1A0JD25 119 aa16.86■□□□□ 0.29
CTDNEP1-201ENST00000318988 FAM218AQ96MZ4 157 aa16.86■□□□□ 0.29
CTDNEP1-201ENST00000318988 A0A1B0GX51 115 aa16.85■□□□□ 0.29
CTDNEP1-201ENST00000318988 LST1O00453 97 aa16.85■□□□□ 0.29
CTDNEP1-201ENST00000318988 IGLV7-43P04211 117 aa16.85■□□□□ 0.29
CTDNEP1-201ENST00000318988 HIGD2AQ9BW72 106 aa16.85■□□□□ 0.29
CTDNEP1-201ENST00000318988 Q9BRP9 147 aa16.84■□□□□ 0.29
CTDNEP1-201ENST00000318988 DNAL4O96015 105 aa16.82■□□□□ 0.28
CTDNEP1-201ENST00000318988 ZNF861PO60384 105 aa16.81■□□□□ 0.28
CTDNEP1-201ENST00000318988 GTF2H5Q6ZYL4 71 aa16.8■□□□□ 0.28
CTDNEP1-201ENST00000318988 KRTAP13-1Q8IUC0 172 aa16.8■□□□□ 0.28
CTDNEP1-201ENST00000318988 EPPK1P58107 5090 aaKnown RBP16.8■□□□□ 0.28
CTDNEP1-201ENST00000318988 TRACP01848 142 aa16.8■□□□□ 0.28
CTDNEP1-201ENST00000318988 SMCR5Q8TEV8 140 aa16.8■□□□□ 0.28
CTDNEP1-201ENST00000318988 A0A1B0GV90 55 aa16.79■□□□□ 0.28
CTDNEP1-201ENST00000318988 FAM229AH3BQW9 127 aa16.79■□□□□ 0.28
CTDNEP1-201ENST00000318988 K7EP34 96 aa16.79■□□□□ 0.28
CTDNEP1-201ENST00000318988 H3BMG7 143 aa16.75■□□□□ 0.27
CTDNEP1-201ENST00000318988 ERC2-IT1O76042 136 aa16.74■□□□□ 0.27
CTDNEP1-201ENST00000318988 PLA2G1BP04054 148 aaKnown RBP16.74■□□□□ 0.27
CTDNEP1-201ENST00000318988 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP16.74■□□□□ 0.27
CTDNEP1-201ENST00000318988 Q6ZQY7 126 aa16.73■□□□□ 0.27
CTDNEP1-201ENST00000318988 GHRHP01286 108 aa16.69■□□□□ 0.26
CTDNEP1-201ENST00000318988 ORMDL1Q9P0S3 153 aa16.69■□□□□ 0.26
CTDNEP1-201ENST00000318988 C9JAW5 83 aa16.68■□□□□ 0.26
CTDNEP1-201ENST00000318988 OCIAD2Q56VL3 154 aa16.68■□□□□ 0.26
CTDNEP1-201ENST00000318988 DEFB105AQ8NG35 78 aa16.66■□□□□ 0.26
CTDNEP1-201ENST00000318988 ZNF706Q9Y5V0 76 aaPredicted RBP16.66■□□□□ 0.26
CTDNEP1-201ENST00000318988 ST20-AS1Q8NBB2 130 aa16.65■□□□□ 0.26
CTDNEP1-201ENST00000318988 Q5VSD8 79 aa16.65■□□□□ 0.26
CTDNEP1-201ENST00000318988 VPS13BQ7Z7G8 4022 aa16.65■□□□□ 0.26
CTDNEP1-201ENST00000318988 H3BQ85 93 aa16.63■□□□□ 0.25
CTDNEP1-201ENST00000318988 HSPG2P98160 4391 aa16.62■□□□□ 0.25
CTDNEP1-201ENST00000318988 BAALC-AS2P0C853 105 aa16.61■□□□□ 0.25
CTDNEP1-201ENST00000318988 UBE2V1Q13404 147 aa16.61■□□□□ 0.25
CTDNEP1-201ENST00000318988 SPINK6Q6UWN8 80 aa16.61■□□□□ 0.25
CTDNEP1-201ENST00000318988 RYR1P21817 5038 aa16.6■□□□□ 0.25
CTDNEP1-201ENST00000318988 KRTAP10-4P60372 401 aaPredicted RBP16.6■□□□□ 0.25
CTDNEP1-201ENST00000318988 GAGE2AQ6NT46 116 aa16.6■□□□□ 0.25
CTDNEP1-201ENST00000318988 MTURNQ8N3F0 131 aa16.6■□□□□ 0.25
CTDNEP1-201ENST00000318988 TEX49A0A1B0GTD5 131 aa16.59■□□□□ 0.25
CTDNEP1-201ENST00000318988 TMEM256-PLSCR3K7ERE1 68 aa16.59■□□□□ 0.25
CTDNEP1-201ENST00000318988 Q8N1X5 172 aa16.59■□□□□ 0.25
CTDNEP1-201ENST00000318988 SPRR4Q96PI1 79 aa16.58■□□□□ 0.24
CTDNEP1-201ENST00000318988 IGLV5-48A0A075B6I7 105 aa16.57■□□□□ 0.24
CTDNEP1-201ENST00000318988 PPDPFLQ8WWR9 84 aa16.57■□□□□ 0.24
CTDNEP1-201ENST00000318988 FAT1Q14517 4588 aa16.55■□□□□ 0.24
CTDNEP1-201ENST00000318988 H3BT86 120 aa16.55■□□□□ 0.24
CTDNEP1-201ENST00000318988 LINC01547P58512 204 aaPredicted RBP16.55■□□□□ 0.24
CTDNEP1-201ENST00000318988 Q8N377 158 aa16.55■□□□□ 0.24
CTDNEP1-201ENST00000318988 ANKRD29Q8N6D5 301 aa16.53■□□□□ 0.24
CTDNEP1-201ENST00000318988 F8W1H4 67 aa16.52■□□□□ 0.24
CTDNEP1-201ENST00000318988 KIAA1109Q2LD37 5005 aa16.51■□□□□ 0.23
CTDNEP1-201ENST00000318988 SPRR1BP22528 89 aa16.5■□□□□ 0.23
CTDNEP1-201ENST00000318988 PRO0461Q9UI25 63 aa16.5■□□□□ 0.23
CTDNEP1-201ENST00000318988 LAMTOR3Q9UHA4 124 aa16.49■□□□□ 0.23
CTDNEP1-201ENST00000318988 SRRM2Q9UQ35 2752 aaKnown RBP16.47■□□□□ 0.23
CTDNEP1-201ENST00000318988 LINC00483Q53H64 154 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms