RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 EGFEM1PQ0D2K5 195 aa4.3□□□□□ -1.72
ZNF540-201ENST00000316433 A0A087X002 238 aa4.29□□□□□ -1.72
ZNF540-201ENST00000316433 C9orf163Q8N9P6 203 aa4.29□□□□□ -1.72
ZNF540-201ENST00000316433 ASH1LQ9NR48 2969 aaKnown RBP4.29□□□□□ -1.72
ZNF540-201ENST00000316433 IGLV5-48A0A075B6I7 105 aa4.29□□□□□ -1.72
ZNF540-201ENST00000316433 A0A1W2PNM2 257 aa4.28□□□□□ -1.72
ZNF540-201ENST00000316433 H0Y9P7 68 aa4.28□□□□□ -1.72
ZNF540-201ENST00000316433 CHCHD10Q8WYQ3 142 aaPredicted RBP4.28□□□□□ -1.72
ZNF540-201ENST00000316433 NBASA2RRP1 2371 aa4.28□□□□□ -1.72
ZNF540-201ENST00000316433 DNAH1Q9P2D7 4330 aa4.28□□□□□ -1.72
ZNF540-201ENST00000316433 KPRPQ5T749 579 aaPredicted RBP4.28□□□□□ -1.72
ZNF540-201ENST00000316433 CELSR1Q9NYQ6 3014 aa4.28□□□□□ -1.72
ZNF540-201ENST00000316433 HIVEP3Q5T1R4 2406 aa4.28□□□□□ -1.72
ZNF540-201ENST00000316433 RTL8CO15255 209 aa4.27□□□□□ -1.73
ZNF540-201ENST00000316433 ATRXP46100 2492 aa4.27□□□□□ -1.73
ZNF540-201ENST00000316433 LINC00528Q8N1L1 170 aa4.27□□□□□ -1.73
ZNF540-201ENST00000316433 SPTA1P02549 2419 aa4.27□□□□□ -1.73
ZNF540-201ENST00000316433 IGLV7-46A0A075B6I9 117 aa4.27□□□□□ -1.73
ZNF540-201ENST00000316433 SPRR1AP35321 89 aa4.27□□□□□ -1.73
ZNF540-201ENST00000316433 REG3AQ06141 175 aa4.27□□□□□ -1.73
ZNF540-201ENST00000316433 IGF2RP11717 2491 aa4.26□□□□□ -1.73
ZNF540-201ENST00000316433 IGKV2D-24A0A075B6R9 120 aa4.26□□□□□ -1.73
ZNF540-201ENST00000316433 DEFB116Q30KQ4 102 aa4.26□□□□□ -1.73
ZNF540-201ENST00000316433 WFDC13Q8IUB5 93 aa4.26□□□□□ -1.73
ZNF540-201ENST00000316433 UBR5O95071 2799 aaPredicted RBP4.26□□□□□ -1.73
ZNF540-201ENST00000316433 DOPEY1Q5JWR5 2465 aa4.25□□□□□ -1.73
ZNF540-201ENST00000316433 AKAP6Q13023 2319 aa4.25□□□□□ -1.73
ZNF540-201ENST00000316433 CSAG1Q6PB30 78 aa4.25□□□□□ -1.73
ZNF540-201ENST00000316433 CLPSL2Q6UWE3 100 aa4.25□□□□□ -1.73
ZNF540-201ENST00000316433 WNK1Q9H4A3 2382 aa4.25□□□□□ -1.73
ZNF540-201ENST00000316433 IGLV8-61A0A075B6I0 122 aa4.25□□□□□ -1.73
ZNF540-201ENST00000316433 SPRR4Q96PI1 79 aa4.25□□□□□ -1.73
ZNF540-201ENST00000316433 DNAH3Q8TD57 4116 aa4.24□□□□□ -1.73
ZNF540-201ENST00000316433 KRTAP4-16G5E9R7 235 aaPredicted RBP4.24□□□□□ -1.73
ZNF540-201ENST00000316433 COL6A6A6NMZ7 2263 aa4.24□□□□□ -1.73
ZNF540-201ENST00000316433 Q8NBF4 154 aa4.24□□□□□ -1.73
ZNF540-201ENST00000316433 RPL37AP8A6NKH3 93 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 C1orf134Q5TEV5 83 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 WFDC10BQ8IUB3 73 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 IGHV6-1A0A0B4J1U7 121 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 UNQ6190/PRO20217Q6UXQ8 127 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 Q6ZR54 194 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 VPS13CQ709C8 3753 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 Q8N377 158 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 DHRS4-AS1Q9P1J3 65 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 C6orf48Q9UBA6 75 aa4.23□□□□□ -1.73
ZNF540-201ENST00000316433 IGLV1-50A0A075B6I6 118 aa4.22□□□□□ -1.73
ZNF540-201ENST00000316433 C1orf137Q5JT78 98 aa4.22□□□□□ -1.73
ZNF540-201ENST00000316433 DEFB105AQ8NG35 78 aa4.22□□□□□ -1.73
ZNF540-201ENST00000316433 LINC01556Q5JQF7 62 aa4.22□□□□□ -1.73
ZNF540-201ENST00000316433 ITPR1Q14643 2758 aa4.22□□□□□ -1.73
ZNF540-201ENST00000316433 A0A096LPF7 62 aa4.21□□□□□ -1.74
ZNF540-201ENST00000316433 SPART-AS1P0CW21 52 aa4.21□□□□□ -1.74
ZNF540-201ENST00000316433 CYSRT1A8MQ03 144 aa4.21□□□□□ -1.74
ZNF540-201ENST00000316433 KRTAP29-1A8MX34 341 aaPredicted RBP4.21□□□□□ -1.74
ZNF540-201ENST00000316433 XAGE1AQ9HD64 81 aa4.21□□□□□ -1.74
ZNF540-201ENST00000316433 COL12A1Q99715 3063 aa4.2□□□□□ -1.74
ZNF540-201ENST00000316433 KRTAP10-3P60369 221 aa4.2□□□□□ -1.74
ZNF540-201ENST00000316433 C7orf33Q8WU49 177 aa4.2□□□□□ -1.74
ZNF540-201ENST00000316433 C2CD3Q4AC94 2353 aa4.19□□□□□ -1.74
ZNF540-201ENST00000316433 IGLV10-54A0A075B6I4 117 aa4.19□□□□□ -1.74
ZNF540-201ENST00000316433 DNAH10OSP0CZ25 163 aa4.19□□□□□ -1.74
ZNF540-201ENST00000316433 KRTAP10-9P60411 292 aa4.19□□□□□ -1.74
ZNF540-201ENST00000316433 C15orf56Q8N910 161 aa4.19□□□□□ -1.74
ZNF540-201ENST00000316433 DYNC2H1Q8NCM8 4307 aaKnown RBP4.19□□□□□ -1.74
ZNF540-201ENST00000316433 ROMO1P60602 79 aa4.18□□□□□ -1.74
ZNF540-201ENST00000316433 HRES1P13985 223 aa4.18□□□□□ -1.74
ZNF540-201ENST00000316433 PCOTHQ58A44 107 aa4.18□□□□□ -1.74
ZNF540-201ENST00000316433 CHD8Q9HCK8 2581 aa4.17□□□□□ -1.74
ZNF540-201ENST00000316433 SPTBN4Q9H254 2564 aa4.17□□□□□ -1.74
ZNF540-201ENST00000316433 SPRR1BP22528 89 aa4.17□□□□□ -1.74
ZNF540-201ENST00000316433 NCOR2Q9Y618 2525 aa4.17□□□□□ -1.74
ZNF540-201ENST00000316433 ANGP03950 147 aaKnown RBP4.17□□□□□ -1.74
ZNF540-201ENST00000316433 CACNA1AO00555 2505 aa4.17□□□□□ -1.74
ZNF540-201ENST00000316433 MAP1AP78559 2803 aaPredicted RBP4.17□□□□□ -1.74
ZNF540-201ENST00000316433 ANK2Q01484 3957 aa4.16□□□□□ -1.74
ZNF540-201ENST00000316433 SPATA8Q6RVD6 105 aa4.16□□□□□ -1.74
ZNF540-201ENST00000316433 CHD6Q8TD26 2715 aa4.16□□□□□ -1.74
ZNF540-201ENST00000316433 Q6ZRX8 168 aa4.15□□□□□ -1.74
ZNF540-201ENST00000316433 SPTAN1Q13813 2472 aaKnown RBP4.15□□□□□ -1.74
ZNF540-201ENST00000316433 FBN2P35556 2912 aa4.15□□□□□ -1.75
ZNF540-201ENST00000316433 RPL37AP61513 92 aaKnown RBP4.14□□□□□ -1.75
ZNF540-201ENST00000316433 CELSR2Q9HCU4 2923 aa4.14□□□□□ -1.75
ZNF540-201ENST00000316433 ANKRD17O75179 2603 aaKnown RBP4.14□□□□□ -1.75
ZNF540-201ENST00000316433 REG3GQ6UW15 175 aa4.14□□□□□ -1.75
ZNF540-201ENST00000316433 DEFB130BP0DP73 79 aa4.13□□□□□ -1.75
ZNF540-201ENST00000316433 DEFB130AP0DP74 79 aa4.13□□□□□ -1.75
ZNF540-201ENST00000316433 UTP20O75691 2785 aaKnown RBP4.12□□□□□ -1.75
ZNF540-201ENST00000316433 CRYBG3Q68DQ2 2970 aa4.12□□□□□ -1.75
ZNF540-201ENST00000316433 MAPK1IP1LQ8NDC0 245 aa4.12□□□□□ -1.75
ZNF540-201ENST00000316433 MIR22HGQ0VDD5 57 aa4.12□□□□□ -1.75
ZNF540-201ENST00000316433 CAMK2N2Q96S95 79 aa4.11□□□□□ -1.75
ZNF540-201ENST00000316433 SPG11Q96JI7 2443 aa4.11□□□□□ -1.75
ZNF540-201ENST00000316433 DEFB131BA0A096LNP1 70 aa4.11□□□□□ -1.75
ZNF540-201ENST00000316433 CFAP46Q8IYW2 2715 aa4.1□□□□□ -1.75
ZNF540-201ENST00000316433 A8MWP4 228 aa4.1□□□□□ -1.75
ZNF540-201ENST00000316433 CSMD2Q7Z408 3487 aa4.09□□□□□ -1.75
ZNF540-201ENST00000316433 A0A087WSZ3 146 aa4.09□□□□□ -1.75
ZNF540-201ENST00000316433 FLNCQ14315 2725 aa4.09□□□□□ -1.75
ZNF540-201ENST00000316433 MXRA5Q9NR99 2828 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms