RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 SPRR1AP35321 89 aa13.55□□□□□ -0.24
HOXD4-201ENST00000306324 KRTAP13-1Q8IUC0 172 aa13.55□□□□□ -0.24
HOXD4-201ENST00000306324 ETDCA0A1B0GVM5 59 aa13.54□□□□□ -0.24
HOXD4-201ENST00000306324 A4D1N5 150 aa13.53□□□□□ -0.24
HOXD4-201ENST00000306324 A6NDN8 102 aa13.52□□□□□ -0.25
HOXD4-201ENST00000306324 SMIM6P0DI80 62 aa13.52□□□□□ -0.25
HOXD4-201ENST00000306324 CBY1Q9Y3M2 126 aa13.52□□□□□ -0.25
HOXD4-201ENST00000306324 KRTAP4-16G5E9R7 235 aaPredicted RBP13.5□□□□□ -0.25
HOXD4-201ENST00000306324 ZNF73O43830 326 aaPredicted RBP13.5□□□□□ -0.25
HOXD4-201ENST00000306324 HIGD2AQ9BW72 106 aa13.49□□□□□ -0.25
HOXD4-201ENST00000306324 UQCR10Q9UDW1 63 aa13.49□□□□□ -0.25
HOXD4-201ENST00000306324 TRAV13-2A0A0B4J235 113 aa13.48□□□□□ -0.25
HOXD4-201ENST00000306324 OXTP01178 125 aa13.48□□□□□ -0.25
HOXD4-201ENST00000306324 KRTAP29-1A8MX34 341 aaPredicted RBP13.48□□□□□ -0.25
HOXD4-201ENST00000306324 C12orf57Q99622 126 aa13.48□□□□□ -0.25
HOXD4-201ENST00000306324 B5MCH6 92 aa13.46□□□□□ -0.25
HOXD4-201ENST00000306324 TAL2Q16559 108 aa13.46□□□□□ -0.25
HOXD4-201ENST00000306324 J3QL48 77 aa13.45□□□□□ -0.26
HOXD4-201ENST00000306324 PRO1933Q9H354 126 aa13.45□□□□□ -0.26
HOXD4-201ENST00000306324 HINT1P49773 126 aaPredicted RBP13.44□□□□□ -0.26
HOXD4-201ENST00000306324 Q6ZRX8 168 aa13.43□□□□□ -0.26
HOXD4-201ENST00000306324 CEND1Q8N111 149 aa13.43□□□□□ -0.26
HOXD4-201ENST00000306324 DMBT1Q9UGM3 2413 aaPredicted RBP13.43□□□□□ -0.26
HOXD4-201ENST00000306324 C6orf99Q4VX62 202 aa13.42□□□□□ -0.26
HOXD4-201ENST00000306324 LINC01600Q96MT4 127 aa13.42□□□□□ -0.26
HOXD4-201ENST00000306324 KRTAP1-4P0C5Y4 121 aa13.41□□□□□ -0.26
HOXD4-201ENST00000306324 HSD52Q0P140 79 aa13.4□□□□□ -0.26
HOXD4-201ENST00000306324 SMCR5Q8TEV8 140 aa13.4□□□□□ -0.26
HOXD4-201ENST00000306324 CFC1BP0CG36 223 aa13.38□□□□□ -0.27
HOXD4-201ENST00000306324 CFC1P0CG37 223 aa13.38□□□□□ -0.27
HOXD4-201ENST00000306324 RPL13AP40429 203 aaKnown RBP13.38□□□□□ -0.27
HOXD4-201ENST00000306324 SMIM11BQ8TCY0 68 aa13.38□□□□□ -0.27
HOXD4-201ENST00000306324 Q9BRP9 147 aa13.38□□□□□ -0.27
HOXD4-201ENST00000306324 TMEM238LA0A1B0GVL6 79 aa13.37□□□□□ -0.27
HOXD4-201ENST00000306324 A6NJY4 79 aa13.37□□□□□ -0.27
HOXD4-201ENST00000306324 RAB37Q96AX2 223 aa13.37□□□□□ -0.27
HOXD4-201ENST00000306324 FXYD2P54710 66 aa13.36□□□□□ -0.27
HOXD4-201ENST00000306324 TNXBP22105 4242 aa13.36□□□□□ -0.27
HOXD4-201ENST00000306324 COX7BP24311 80 aa13.36□□□□□ -0.27
HOXD4-201ENST00000306324 ELOF1P60002 83 aaKnown RBP13.35□□□□□ -0.27
HOXD4-201ENST00000306324 PRR26Q8N8Z3 221 aa13.35□□□□□ -0.27
HOXD4-201ENST00000306324 A0A0B4J2C4 111 aa13.34□□□□□ -0.27
HOXD4-201ENST00000306324 ERC2-IT1O76042 136 aa13.34□□□□□ -0.27
HOXD4-201ENST00000306324 MT1HL1P0DM35 61 aa13.34□□□□□ -0.27
HOXD4-201ENST00000306324 ANAPC11Q9NYG5 84 aa13.34□□□□□ -0.27
HOXD4-201ENST00000306324 TRBV7-6A0A0J9YX20 115 aa13.32□□□□□ -0.28
HOXD4-201ENST00000306324 H7C2G1 150 aa13.32□□□□□ -0.28
HOXD4-201ENST00000306324 ZNF706Q9Y5V0 76 aaPredicted RBP13.32□□□□□ -0.28
HOXD4-201ENST00000306324 A0A1B0GWB2 263 aa13.31□□□□□ -0.28
HOXD4-201ENST00000306324 SPRR4Q96PI1 79 aa13.31□□□□□ -0.28
HOXD4-201ENST00000306324 KRTAP10-8P60410 259 aa13.29□□□□□ -0.28
HOXD4-201ENST00000306324 DHRS4-AS1Q9P1J3 65 aa13.29□□□□□ -0.28
HOXD4-201ENST00000306324 TSTD3H0UI37 97 aa13.29□□□□□ -0.28
HOXD4-201ENST00000306324 NHP2Q9NX24 153 aaKnown RBP13.29□□□□□ -0.28
HOXD4-201ENST00000306324 A0A087X002 238 aa13.28□□□□□ -0.28
HOXD4-201ENST00000306324 CRYGAP11844 174 aa13.28□□□□□ -0.28
HOXD4-201ENST00000306324 VAMP3Q15836 100 aa13.28□□□□□ -0.28
HOXD4-201ENST00000306324 HERC1Q15751 4861 aa13.27□□□□□ -0.29
HOXD4-201ENST00000306324 PRO1854Q9UHT4 67 aa13.27□□□□□ -0.29
HOXD4-201ENST00000306324 GAGE2AQ6NT46 116 aa13.26□□□□□ -0.29
HOXD4-201ENST00000306324 Q1RN00 199 aa13.25□□□□□ -0.29
HOXD4-201ENST00000306324 FAM229BQ4G0N7 80 aa13.25□□□□□ -0.29
HOXD4-201ENST00000306324 CTAG1AP78358 180 aa13.24□□□□□ -0.29
HOXD4-201ENST00000306324 BVES-AS1Q5T3Y7 98 aa13.23□□□□□ -0.29
HOXD4-201ENST00000306324 ST20-AS1Q8NBB2 130 aa13.23□□□□□ -0.29
HOXD4-201ENST00000306324 K7ERJ3 54 aa13.23□□□□□ -0.29
HOXD4-201ENST00000306324 KRTAP13-2Q52LG2 175 aa13.2□□□□□ -0.3
HOXD4-201ENST00000306324 SLC25A20O43772 301 aa13.19□□□□□ -0.3
HOXD4-201ENST00000306324 LINC00483Q53H64 154 aa13.19□□□□□ -0.3
HOXD4-201ENST00000306324 TYMSOSQ8TAI1 123 aa13.19□□□□□ -0.3
HOXD4-201ENST00000306324 M0R143 59 aa13.17□□□□□ -0.3
HOXD4-201ENST00000306324 LINC00575Q6W349 94 aa13.17□□□□□ -0.3
HOXD4-201ENST00000306324 C3orf22Q8N5N4 141 aa13.16□□□□□ -0.3
HOXD4-201ENST00000306324 DEFB105AQ8NG35 78 aa13.15□□□□□ -0.3
HOXD4-201ENST00000306324 hADV29S1A0JD25 119 aa13.14□□□□□ -0.31
HOXD4-201ENST00000306324 IGLV9-49A0A0B4J1Y8 123 aa13.11□□□□□ -0.31
HOXD4-201ENST00000306324 H0YGX0 51 aa13.11□□□□□ -0.31
HOXD4-201ENST00000306324 TRIAP1O43715 76 aa13.11□□□□□ -0.31
HOXD4-201ENST00000306324 PSMB2P49721 201 aa13.11□□□□□ -0.31
HOXD4-201ENST00000306324 TSPAN13O95857 204 aa13.1□□□□□ -0.31
HOXD4-201ENST00000306324 SPRR1BP22528 89 aa13.1□□□□□ -0.31
HOXD4-201ENST00000306324 TEX49A0A1B0GTD5 131 aa13.09□□□□□ -0.31
HOXD4-201ENST00000306324 Q6ZQY7 126 aa13.08□□□□□ -0.32
HOXD4-201ENST00000306324 MOBPQ13875 183 aa13.07□□□□□ -0.32
HOXD4-201ENST00000306324 IGLV5-48A0A075B6I7 105 aa13.06□□□□□ -0.32
HOXD4-201ENST00000306324 LINC01547P58512 204 aaPredicted RBP13.06□□□□□ -0.32
HOXD4-201ENST00000306324 BATFQ16520 125 aa13.06□□□□□ -0.32
HOXD4-201ENST00000306324 FAM218AQ96MZ4 157 aa13.06□□□□□ -0.32
HOXD4-201ENST00000306324 SNCGO76070 127 aa13.05□□□□□ -0.32
HOXD4-201ENST00000306324 C9orf153Q5TBE3 101 aa13.05□□□□□ -0.32
HOXD4-201ENST00000306324 COX6CP09669 75 aa13.04□□□□□ -0.32
HOXD4-201ENST00000306324 LAMTOR3Q9UHA4 124 aa13.04□□□□□ -0.32
HOXD4-201ENST00000306324 LINC00304Q8N9R0 145 aa13.04□□□□□ -0.32
HOXD4-201ENST00000306324 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.03□□□□□ -0.32
HOXD4-201ENST00000306324 Q8N377 158 aa13.03□□□□□ -0.32
HOXD4-201ENST00000306324 Q8NBF4 154 aa13.02□□□□□ -0.33
HOXD4-201ENST00000306324 CLEC2BQ92478 149 aa13.02□□□□□ -0.33
HOXD4-201ENST00000306324 SSBP3-AS1Q7Z2R9 100 aa12.99□□□□□ -0.33
HOXD4-201ENST00000306324 SCGB1C2P0DMR2 95 aa12.98□□□□□ -0.33
HOXD4-201ENST00000306324 SMIM29Q86T20 159 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms