RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 DIRC1Q969H9 104 aa14.9□□□□□ -0.02
HOXC9-201ENST00000303450 PRO1933Q9H354 126 aa14.9□□□□□ -0.02
HOXC9-201ENST00000303450 TRAV13-2A0A0B4J235 113 aa14.89□□□□□ -0.03
HOXC9-201ENST00000303450 ETDCA0A1B0GVM5 59 aa14.89□□□□□ -0.03
HOXC9-201ENST00000303450 PRLHP81277 87 aa14.89□□□□□ -0.03
HOXC9-201ENST00000303450 KRTAP13-1Q8IUC0 172 aa14.87□□□□□ -0.03
HOXC9-201ENST00000303450 C12orf57Q99622 126 aa14.87□□□□□ -0.03
HOXC9-201ENST00000303450 ZNF73O43830 326 aaPredicted RBP14.87□□□□□ -0.03
HOXC9-201ENST00000303450 CEND1Q8N111 149 aa14.87□□□□□ -0.03
HOXC9-201ENST00000303450 PCLOQ9Y6V0 5065 aa14.86□□□□□ -0.03
HOXC9-201ENST00000303450 KRTAP4-16G5E9R7 235 aaPredicted RBP14.86□□□□□ -0.03
HOXC9-201ENST00000303450 H0Y9J4 135 aa14.86□□□□□ -0.03
HOXC9-201ENST00000303450 HSD52Q0P140 79 aa14.84□□□□□ -0.03
HOXC9-201ENST00000303450 HINT1P49773 126 aaPredicted RBP14.82□□□□□ -0.04
HOXC9-201ENST00000303450 TMEM238LA0A1B0GVL6 79 aa14.81□□□□□ -0.04
HOXC9-201ENST00000303450 A6NJY4 79 aa14.81□□□□□ -0.04
HOXC9-201ENST00000303450 B5MCH6 92 aa14.81□□□□□ -0.04
HOXC9-201ENST00000303450 HIGD2AQ9BW72 106 aa14.8□□□□□ -0.04
HOXC9-201ENST00000303450 MYCBP2O75592 4640 aa14.78□□□□□ -0.04
HOXC9-201ENST00000303450 CFC1BP0CG36 223 aa14.78□□□□□ -0.04
HOXC9-201ENST00000303450 CFC1P0CG37 223 aa14.78□□□□□ -0.04
HOXC9-201ENST00000303450 FXYD2P54710 66 aa14.78□□□□□ -0.04
HOXC9-201ENST00000303450 RAB37Q96AX2 223 aa14.78□□□□□ -0.04
HOXC9-201ENST00000303450 C6orf99Q4VX62 202 aa14.77□□□□□ -0.04
HOXC9-201ENST00000303450 Q6ZRX8 168 aa14.77□□□□□ -0.04
HOXC9-201ENST00000303450 TSTD3H0UI37 97 aa14.76□□□□□ -0.05
HOXC9-201ENST00000303450 RPL13AP40429 203 aaKnown RBP14.76□□□□□ -0.05
HOXC9-201ENST00000303450 SMIM11BQ8TCY0 68 aa14.76□□□□□ -0.05
HOXC9-201ENST00000303450 A0A0B4J2C4 111 aa14.74□□□□□ -0.05
HOXC9-201ENST00000303450 OXTP01178 125 aa14.74□□□□□ -0.05
HOXC9-201ENST00000303450 COX7BP24311 80 aa14.72□□□□□ -0.05
HOXC9-201ENST00000303450 SMCR5Q8TEV8 140 aa14.72□□□□□ -0.05
HOXC9-201ENST00000303450 Q9BRP9 147 aa14.71□□□□□ -0.05
HOXC9-201ENST00000303450 LRP1Q07954 4544 aaKnown RBP14.71□□□□□ -0.06
HOXC9-201ENST00000303450 TRBV7-6A0A0J9YX20 115 aa14.71□□□□□ -0.06
HOXC9-201ENST00000303450 KRTAP29-1A8MX34 341 aaPredicted RBP14.71□□□□□ -0.06
HOXC9-201ENST00000303450 H7C2G1 150 aa14.7□□□□□ -0.06
HOXC9-201ENST00000303450 ELOF1P60002 83 aaKnown RBP14.7□□□□□ -0.06
HOXC9-201ENST00000303450 CTAG1AP78358 180 aa14.69□□□□□ -0.06
HOXC9-201ENST00000303450 LINC01600Q96MT4 127 aa14.69□□□□□ -0.06
HOXC9-201ENST00000303450 NHP2Q9NX24 153 aaKnown RBP14.69□□□□□ -0.06
HOXC9-201ENST00000303450 FAT3Q8TDW7 4589 aa14.69□□□□□ -0.06
HOXC9-201ENST00000303450 KRTAP1-4P0C5Y4 121 aa14.68□□□□□ -0.06
HOXC9-201ENST00000303450 A0A1B0GWB2 263 aa14.67□□□□□ -0.06
HOXC9-201ENST00000303450 PRO1854Q9UHT4 67 aa14.67□□□□□ -0.06
HOXC9-201ENST00000303450 BVES-AS1Q5T3Y7 98 aa14.66□□□□□ -0.06
HOXC9-201ENST00000303450 VAMP3Q15836 100 aa14.66□□□□□ -0.06
HOXC9-201ENST00000303450 DHRS4-AS1Q9P1J3 65 aa14.66□□□□□ -0.06
HOXC9-201ENST00000303450 J3QL48 77 aa14.65□□□□□ -0.06
HOXC9-201ENST00000303450 ERC2-IT1O76042 136 aa14.65□□□□□ -0.06
HOXC9-201ENST00000303450 ZNF706Q9Y5V0 76 aaPredicted RBP14.65□□□□□ -0.06
HOXC9-201ENST00000303450 Q1RN00 199 aa14.63□□□□□ -0.07
HOXC9-201ENST00000303450 SPRR4Q96PI1 79 aa14.62□□□□□ -0.07
HOXC9-201ENST00000303450 K7ERJ3 54 aa14.61□□□□□ -0.07
HOXC9-201ENST00000303450 M0R143 59 aa14.61□□□□□ -0.07
HOXC9-201ENST00000303450 ANAPC11Q9NYG5 84 aa14.61□□□□□ -0.07
HOXC9-201ENST00000303450 PRR26Q8N8Z3 221 aa14.59□□□□□ -0.07
HOXC9-201ENST00000303450 CRYGAP11844 174 aa14.56□□□□□ -0.08
HOXC9-201ENST00000303450 FAM229BQ4G0N7 80 aa14.56□□□□□ -0.08
HOXC9-201ENST00000303450 GAGE2AQ6NT46 116 aa14.56□□□□□ -0.08
HOXC9-201ENST00000303450 SLC25A20O43772 301 aa14.56□□□□□ -0.08
HOXC9-201ENST00000303450 MT1HL1P0DM35 61 aa14.56□□□□□ -0.08
HOXC9-201ENST00000303450 DMBT1Q9UGM3 2413 aaPredicted RBP14.55□□□□□ -0.08
HOXC9-201ENST00000303450 A0A087X002 238 aa14.54□□□□□ -0.08
HOXC9-201ENST00000303450 KRTAP10-8P60410 259 aa14.54□□□□□ -0.08
HOXC9-201ENST00000303450 ST20-AS1Q8NBB2 130 aa14.54□□□□□ -0.08
HOXC9-201ENST00000303450 LINC00575Q6W349 94 aa14.52□□□□□ -0.08
HOXC9-201ENST00000303450 LINC00483Q53H64 154 aa14.51□□□□□ -0.09
HOXC9-201ENST00000303450 TNXBP22105 4242 aa14.5□□□□□ -0.09
HOXC9-201ENST00000303450 H0YGX0 51 aa14.5□□□□□ -0.09
HOXC9-201ENST00000303450 TSPAN13O95857 204 aa14.49□□□□□ -0.09
HOXC9-201ENST00000303450 PSMB2P49721 201 aa14.49□□□□□ -0.09
HOXC9-201ENST00000303450 hADV29S1A0JD25 119 aa14.48□□□□□ -0.09
HOXC9-201ENST00000303450 TRIAP1O43715 76 aa14.48□□□□□ -0.09
HOXC9-201ENST00000303450 BATFQ16520 125 aa14.47□□□□□ -0.09
HOXC9-201ENST00000303450 KRTAP13-2Q52LG2 175 aa14.46□□□□□ -0.09
HOXC9-201ENST00000303450 TYMSOSQ8TAI1 123 aa14.46□□□□□ -0.09
HOXC9-201ENST00000303450 DEFB105AQ8NG35 78 aa14.46□□□□□ -0.1
HOXC9-201ENST00000303450 SNCGO76070 127 aa14.44□□□□□ -0.1
HOXC9-201ENST00000303450 COX6CP09669 75 aa14.43□□□□□ -0.1
HOXC9-201ENST00000303450 SPRR1BP22528 89 aa14.42□□□□□ -0.1
HOXC9-201ENST00000303450 C3orf22Q8N5N4 141 aa14.42□□□□□ -0.1
HOXC9-201ENST00000303450 TEX49A0A1B0GTD5 131 aa14.41□□□□□ -0.1
HOXC9-201ENST00000303450 Q6ZQY7 126 aa14.41□□□□□ -0.1
HOXC9-201ENST00000303450 FAM218AQ96MZ4 157 aa14.41□□□□□ -0.1
HOXC9-201ENST00000303450 IGLV5-48A0A075B6I7 105 aa14.39□□□□□ -0.11
HOXC9-201ENST00000303450 IGLV9-49A0A0B4J1Y8 123 aa14.38□□□□□ -0.11
HOXC9-201ENST00000303450 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.38□□□□□ -0.11
HOXC9-201ENST00000303450 LINC01547P58512 204 aaPredicted RBP14.37□□□□□ -0.11
HOXC9-201ENST00000303450 SCGB1C2P0DMR2 95 aa14.36□□□□□ -0.11
HOXC9-201ENST00000303450 CLEC2BQ92478 149 aa14.36□□□□□ -0.11
HOXC9-201ENST00000303450 LAMTOR3Q9UHA4 124 aa14.36□□□□□ -0.11
HOXC9-201ENST00000303450 A0A1B0GX51 115 aa14.36□□□□□ -0.11
HOXC9-201ENST00000303450 MOBPQ13875 183 aa14.34□□□□□ -0.11
HOXC9-201ENST00000303450 Q8N377 158 aa14.34□□□□□ -0.11
HOXC9-201ENST00000303450 C9orf153Q5TBE3 101 aa14.33□□□□□ -0.12
HOXC9-201ENST00000303450 PCP4L1A6NKN8 68 aa14.31□□□□□ -0.12
HOXC9-201ENST00000303450 NAA38Q9BRA0 125 aaKnown RBP14.31□□□□□ -0.12
HOXC9-201ENST00000303450 OCIAD2Q56VL3 154 aa14.3□□□□□ -0.12
HOXC9-201ENST00000303450 SMIM29Q86T20 159 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms