RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 ANAPC11Q9NYG5 84 aa7.98□□□□□ -1.13
VPS28-201ENST00000292510 KRTAP4-16G5E9R7 235 aaPredicted RBP7.97□□□□□ -1.13
VPS28-201ENST00000292510 IGLV6-57P01721 117 aa7.97□□□□□ -1.13
VPS28-201ENST00000292510 SPRR1AP35321 89 aa7.97□□□□□ -1.13
VPS28-201ENST00000292510 HIGD2AQ9BW72 106 aa7.97□□□□□ -1.13
VPS28-201ENST00000292510 ETDCA0A1B0GVM5 59 aa7.96□□□□□ -1.14
VPS28-201ENST00000292510 LINC00337Q8N6G1 96 aa7.96□□□□□ -1.14
VPS28-201ENST00000292510 TRAV23DV6A0A075B6W5 121 aa7.94□□□□□ -1.14
VPS28-201ENST00000292510 A0A087X002 238 aa7.94□□□□□ -1.14
VPS28-201ENST00000292510 MUSTN1Q8IVN3 82 aa7.94□□□□□ -1.14
VPS28-201ENST00000292510 OR13C6PQ8NH95 151 aa7.94□□□□□ -1.14
VPS28-201ENST00000292510 B5MCH6 92 aa7.93□□□□□ -1.14
VPS28-201ENST00000292510 C14orf144Q96I85 54 aa7.93□□□□□ -1.14
VPS28-201ENST00000292510 VAMP8Q9BV40 100 aa7.93□□□□□ -1.14
VPS28-201ENST00000292510 IFITM1P13164 125 aa7.92□□□□□ -1.14
VPS28-201ENST00000292510 Q6ZVH6 145 aa7.92□□□□□ -1.14
VPS28-201ENST00000292510 SMCR5Q8TEV8 140 aa7.92□□□□□ -1.14
VPS28-201ENST00000292510 ZNF73O43830 326 aaPredicted RBP7.91□□□□□ -1.14
VPS28-201ENST00000292510 RPL13AP40429 203 aaKnown RBP7.9□□□□□ -1.14
VPS28-201ENST00000292510 PAM16Q9Y3D7 125 aa7.9□□□□□ -1.14
VPS28-201ENST00000292510 ERC2-IT1O76042 136 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 COX8AP10176 69 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 CRYGAP11844 174 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 KRTAP13-2Q52LG2 175 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 SPATA45Q537H7 98 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 COPS9Q8WXC6 57 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 SPRR4Q96PI1 79 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 Q9BRP9 147 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 PPDPFQ9H3Y8 114 aa7.89□□□□□ -1.15
VPS28-201ENST00000292510 Q6ZRX8 168 aa7.88□□□□□ -1.15
VPS28-201ENST00000292510 FAM229BQ4G0N7 80 aa7.87□□□□□ -1.15
VPS28-201ENST00000292510 TYMSOSQ8TAI1 123 aa7.87□□□□□ -1.15
VPS28-201ENST00000292510 A6NDN8 102 aa7.86□□□□□ -1.15
VPS28-201ENST00000292510 M0R143 59 aa7.86□□□□□ -1.15
VPS28-201ENST00000292510 CBY1Q9Y3M2 126 aa7.86□□□□□ -1.15
VPS28-201ENST00000292510 C3orf22Q8N5N4 141 aa7.85□□□□□ -1.15
VPS28-201ENST00000292510 UQCR10Q9UDW1 63 aa7.85□□□□□ -1.15
VPS28-201ENST00000292510 ZNF706Q9Y5V0 76 aaPredicted RBP7.85□□□□□ -1.15
VPS28-201ENST00000292510 DLEU1O43261 78 aa7.84□□□□□ -1.15
VPS28-201ENST00000292510 C6orf99Q4VX62 202 aa7.84□□□□□ -1.15
VPS28-201ENST00000292510 A4D1N5 150 aa7.83□□□□□ -1.16
VPS28-201ENST00000292510 HINT1P49773 126 aaPredicted RBP7.83□□□□□ -1.16
VPS28-201ENST00000292510 GAGE2AQ6NT46 116 aa7.83□□□□□ -1.16
VPS28-201ENST00000292510 HIST1H4GQ99525 98 aa7.83□□□□□ -1.16
VPS28-201ENST00000292510 LRP2P98164 4655 aa7.82□□□□□ -1.16
VPS28-201ENST00000292510 TRAV13-2A0A0B4J235 113 aa7.81□□□□□ -1.16
VPS28-201ENST00000292510 TSPAN13O95857 204 aa7.81□□□□□ -1.16
VPS28-201ENST00000292510 COX7BP24311 80 aa7.81□□□□□ -1.16
VPS28-201ENST00000292510 ELOF1P60002 83 aaKnown RBP7.81□□□□□ -1.16
VPS28-201ENST00000292510 LINC00483Q53H64 154 aa7.81□□□□□ -1.16
VPS28-201ENST00000292510 SLC25A34Q6PIV7 304 aa7.81□□□□□ -1.16
VPS28-201ENST00000292510 ST20-AS1Q8NBB2 130 aa7.81□□□□□ -1.16
VPS28-201ENST00000292510 C2orf91Q6ZV80 131 aa7.8□□□□□ -1.16
VPS28-201ENST00000292510 SNHG12Q9BXW3 62 aa7.8□□□□□ -1.16
VPS28-201ENST00000292510 SMIM11BQ8TCY0 68 aa7.79□□□□□ -1.16
VPS28-201ENST00000292510 LINC00304Q8N9R0 145 aa7.78□□□□□ -1.16
VPS28-201ENST00000292510 HIGD1BQ9P298 99 aa7.78□□□□□ -1.16
VPS28-201ENST00000292510 UBR4Q5T4S7 5183 aa7.78□□□□□ -1.16
VPS28-201ENST00000292510 A0A1B0GV90 55 aa7.77□□□□□ -1.17
VPS28-201ENST00000292510 DHRS4-AS1Q9P1J3 65 aa7.77□□□□□ -1.17
VPS28-201ENST00000292510 IGLV9-49A0A0B4J1Y8 123 aa7.76□□□□□ -1.17
VPS28-201ENST00000292510 TRBV7-6A0A0J9YX20 115 aa7.76□□□□□ -1.17
VPS28-201ENST00000292510 A0A1B0GWB2 263 aa7.76□□□□□ -1.17
VPS28-201ENST00000292510 LPAP08519 4548 aa7.75□□□□□ -1.17
VPS28-201ENST00000292510 MOBPQ13875 183 aa7.74□□□□□ -1.17
VPS28-201ENST00000292510 COL5A1-AS1Q5SY13 56 aa7.74□□□□□ -1.17
VPS28-201ENST00000292510 Q8NBF4 154 aa7.74□□□□□ -1.17
VPS28-201ENST00000292510 CFC1BP0CG36 223 aa7.73□□□□□ -1.17
VPS28-201ENST00000292510 CFC1P0CG37 223 aa7.73□□□□□ -1.17
VPS28-201ENST00000292510 CEND1Q8N111 149 aa7.72□□□□□ -1.17
VPS28-201ENST00000292510 DEFB105AQ8NG35 78 aa7.72□□□□□ -1.17
VPS28-201ENST00000292510 H7C2G1 150 aa7.71□□□□□ -1.18
VPS28-201ENST00000292510 PRR4Q16378 134 aa7.71□□□□□ -1.18
VPS28-201ENST00000292510 BATFQ16520 125 aa7.71□□□□□ -1.18
VPS28-201ENST00000292510 TAL2Q16559 108 aa7.71□□□□□ -1.18
VPS28-201ENST00000292510 SPRR1BP22528 89 aa7.7□□□□□ -1.18
VPS28-201ENST00000292510 FXYD2P54710 66 aa7.7□□□□□ -1.18
VPS28-201ENST00000292510 C9orf153Q5TBE3 101 aa7.7□□□□□ -1.18
VPS28-201ENST00000292510 RAB37Q96AX2 223 aa7.7□□□□□ -1.18
VPS28-201ENST00000292510 RETNLBQ9BQ08 111 aa7.7□□□□□ -1.18
VPS28-201ENST00000292510 VAMP3Q15836 100 aa7.69□□□□□ -1.18
VPS28-201ENST00000292510 A0A0B4J2C4 111 aa7.68□□□□□ -1.18
VPS28-201ENST00000292510 LINC01547P58512 204 aaPredicted RBP7.68□□□□□ -1.18
VPS28-201ENST00000292510 C4orf48Q5BLP8 95 aa7.68□□□□□ -1.18
VPS28-201ENST00000292510 LINC00575Q6W349 94 aa7.68□□□□□ -1.18
VPS28-201ENST00000292510 SSBP3-AS1Q7Z2R9 100 aa7.68□□□□□ -1.18
VPS28-201ENST00000292510 Q1RN00 199 aa7.67□□□□□ -1.18
VPS28-201ENST00000292510 SPAG11AQ6PDA7 123 aa7.67□□□□□ -1.18
VPS28-201ENST00000292510 NHP2Q9NX24 153 aaKnown RBP7.67□□□□□ -1.18
VPS28-201ENST00000292510 IGLV5-48A0A075B6I7 105 aa7.66□□□□□ -1.18
VPS28-201ENST00000292510 TEX49A0A1B0GTD5 131 aa7.66□□□□□ -1.18
VPS28-201ENST00000292510 SLC25A20O43772 301 aa7.66□□□□□ -1.18
VPS28-201ENST00000292510 HSD52Q0P140 79 aa7.66□□□□□ -1.18
VPS28-201ENST00000292510 LAMTOR3Q9UHA4 124 aa7.66□□□□□ -1.18
VPS28-201ENST00000292510 TMEM238LA0A1B0GVL6 79 aa7.65□□□□□ -1.18
VPS28-201ENST00000292510 hADV29S1A0JD25 119 aa7.65□□□□□ -1.18
VPS28-201ENST00000292510 A6NJY4 79 aa7.65□□□□□ -1.18
VPS28-201ENST00000292510 SMIM29Q86T20 159 aa7.65□□□□□ -1.18
VPS28-201ENST00000292510 BVES-AS1Q5T3Y7 98 aa7.64□□□□□ -1.19
VPS28-201ENST00000292510 Q8N377 158 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms