RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 M0R2T5 61 aa7.65□□□□□ -1.18
PTPN4-201ENST00000263708 ERC2-IT1O76042 136 aa7.64□□□□□ -1.19
PTPN4-201ENST00000263708 C8orf17Q9NRJ1 99 aa7.63□□□□□ -1.19
PTPN4-201ENST00000263708 KRTAP24-1Q3LI83 254 aa7.63□□□□□ -1.19
PTPN4-201ENST00000263708 LINC01546A6NGU7 62 aa7.62□□□□□ -1.19
PTPN4-201ENST00000263708 IGLV5-45A0A087WSX0 123 aa7.62□□□□□ -1.19
PTPN4-201ENST00000263708 Q8N1X5 172 aa7.62□□□□□ -1.19
PTPN4-201ENST00000263708 A0A1B0GVX0 72 aa7.62□□□□□ -1.19
PTPN4-201ENST00000263708 DNAH10OSP0CZ25 163 aa7.62□□□□□ -1.19
PTPN4-201ENST00000263708 SMCPP49901 116 aaPredicted RBP7.61□□□□□ -1.19
PTPN4-201ENST00000263708 CENPEQ02224 2701 aa7.61□□□□□ -1.19
PTPN4-201ENST00000263708 Q8NAQ8 132 aa7.61□□□□□ -1.19
PTPN4-201ENST00000263708 CAMK2N1Q7Z7J9 78 aa7.6□□□□□ -1.19
PTPN4-201ENST00000263708 IGFL1Q6UW32 110 aa7.6□□□□□ -1.19
PTPN4-201ENST00000263708 FLNBO75369 2602 aaKnown RBP7.59□□□□□ -1.19
PTPN4-201ENST00000263708 ANAPC11Q9NYG5 84 aa7.59□□□□□ -1.19
PTPN4-201ENST00000263708 PRR15Q8IV56 129 aa7.58□□□□□ -1.2
PTPN4-201ENST00000263708 ATRQ13535 2644 aa7.57□□□□□ -1.2
PTPN4-201ENST00000263708 ZNF861PO60384 105 aa7.57□□□□□ -1.2
PTPN4-201ENST00000263708 LINC00336Q6ZUF6 198 aa7.56□□□□□ -1.2
PTPN4-201ENST00000263708 KTN1-AS1Q86SY8 53 aa7.56□□□□□ -1.2
PTPN4-201ENST00000263708 IGLV1-50A0A075B6I6 118 aa7.56□□□□□ -1.2
PTPN4-201ENST00000263708 FAM104AQ969W3 186 aa7.56□□□□□ -1.2
PTPN4-201ENST00000263708 A0A0G2JQZ4 141 aa7.55□□□□□ -1.2
PTPN4-201ENST00000263708 A0A1W2PNN7 141 aa7.55□□□□□ -1.2
PTPN4-201ENST00000263708 COL4A2P08572 1712 aa7.54□□□□□ -1.2
PTPN4-201ENST00000263708 LCA10Q71F78 164 aa7.53□□□□□ -1.2
PTPN4-201ENST00000263708 MAST4O15021 2626 aa7.53□□□□□ -1.2
PTPN4-201ENST00000263708 Q6ZSA8 131 aa7.52□□□□□ -1.2
PTPN4-201ENST00000263708 CD164Q04900 197 aa7.52□□□□□ -1.21
PTPN4-201ENST00000263708 C15orf56Q8N910 161 aa7.52□□□□□ -1.21
PTPN4-201ENST00000263708 HECTD1Q9ULT8 2610 aa7.52□□□□□ -1.21
PTPN4-201ENST00000263708 BPTFQ12830 3046 aa7.52□□□□□ -1.21
PTPN4-201ENST00000263708 KCNQ1DNQ9H478 68 aa7.51□□□□□ -1.21
PTPN4-201ENST00000263708 MGAM2Q2M2H8 2515 aa7.51□□□□□ -1.21
PTPN4-201ENST00000263708 PRO0461Q9UI25 63 aa7.5□□□□□ -1.21
PTPN4-201ENST00000263708 Q1T7F1 81 aa7.49□□□□□ -1.21
PTPN4-201ENST00000263708 FLNAP21333 2647 aaKnown RBP7.49□□□□□ -1.21
PTPN4-201ENST00000263708 IGLV7-43P04211 117 aa7.47□□□□□ -1.21
PTPN4-201ENST00000263708 A0A087WTM6 91 aa7.47□□□□□ -1.21
PTPN4-201ENST00000263708 WIPF1O43516 503 aa7.47□□□□□ -1.21
PTPN4-201ENST00000263708 LINC00528Q8N1L1 170 aa7.46□□□□□ -1.22
PTPN4-201ENST00000263708 KRTAP10-11P60412 298 aa7.45□□□□□ -1.22
PTPN4-201ENST00000263708 Q8N377 158 aa7.45□□□□□ -1.22
PTPN4-201ENST00000263708 PRR26Q8N8Z3 221 aa7.44□□□□□ -1.22
PTPN4-201ENST00000263708 TLX1NBP0CAT3 122 aa7.44□□□□□ -1.22
PTPN4-201ENST00000263708 PSORS1C2Q9UIG4 136 aa7.44□□□□□ -1.22
PTPN4-201ENST00000263708 CENPFP49454 3210 aa7.43□□□□□ -1.22
PTPN4-201ENST00000263708 K7EIL1 84 aa7.43□□□□□ -1.22
PTPN4-201ENST00000263708 SRCAPQ6ZRS2 3230 aa7.42□□□□□ -1.22
PTPN4-201ENST00000263708 LITAFQ99732 161 aa7.39□□□□□ -1.23
PTPN4-201ENST00000263708 HRES1P13985 223 aa7.39□□□□□ -1.23
PTPN4-201ENST00000263708 KLKP1Q107X0 134 aa7.38□□□□□ -1.23
PTPN4-201ENST00000263708 PLA2G2DQ9UNK4 145 aa7.38□□□□□ -1.23
PTPN4-201ENST00000263708 IGLV7-46A0A075B6I9 117 aa7.38□□□□□ -1.23
PTPN4-201ENST00000263708 SPRR4Q96PI1 79 aa7.38□□□□□ -1.23
PTPN4-201ENST00000263708 A0A1B0GU33 70 aa7.37□□□□□ -1.23
PTPN4-201ENST00000263708 A0A0A0MQY5 61 aa7.37□□□□□ -1.23
PTPN4-201ENST00000263708 C9orf163Q8N9P6 203 aa7.37□□□□□ -1.23
PTPN4-201ENST00000263708 S4R3F8 94 aa7.36□□□□□ -1.23
PTPN4-201ENST00000263708 HELZ2Q9BYK8 2649 aaKnown RBP7.35□□□□□ -1.23
PTPN4-201ENST00000263708 H7BZZ5 65 aa7.35□□□□□ -1.23
PTPN4-201ENST00000263708 AKAP13Q12802 2813 aa7.35□□□□□ -1.23
PTPN4-201ENST00000263708 SPANXA2-OT1Q8N9U9 137 aa7.34□□□□□ -1.23
PTPN4-201ENST00000263708 CFAP46Q8IYW2 2715 aa7.34□□□□□ -1.23
PTPN4-201ENST00000263708 ITPR3Q14573 2671 aa7.32□□□□□ -1.24
PTPN4-201ENST00000263708 LINC00612Q8N6U2 182 aa7.3□□□□□ -1.24
PTPN4-201ENST00000263708 PRR34Q9NV39 138 aa7.29□□□□□ -1.24
PTPN4-201ENST00000263708 SPINK7P58062 85 aa7.28□□□□□ -1.24
PTPN4-201ENST00000263708 EP400Q96L91 3159 aa7.27□□□□□ -1.25
PTPN4-201ENST00000263708 CASC10Q5T4H9 136 aa7.27□□□□□ -1.25
PTPN4-201ENST00000263708 TEP1Q99973 2627 aaKnown RBP7.27□□□□□ -1.25
PTPN4-201ENST00000263708 CSAG1Q6PB30 78 aa7.26□□□□□ -1.25
PTPN4-201ENST00000263708 EIF4EBP3O60516 100 aaPredicted RBP7.26□□□□□ -1.25
PTPN4-201ENST00000263708 C19orf73Q9NVV2 129 aa7.26□□□□□ -1.25
PTPN4-201ENST00000263708 R4GN34 69 aa7.25□□□□□ -1.25
PTPN4-201ENST00000263708 H3BS24 57 aa7.24□□□□□ -1.25
PTPN4-201ENST00000263708 DMAC1Q96GE9 116 aa7.24□□□□□ -1.25
PTPN4-201ENST00000263708 CNBPP62633 177 aaKnown RBP7.23□□□□□ -1.25
PTPN4-201ENST00000263708 A0A1W2PNM2 257 aa7.22□□□□□ -1.25
PTPN4-201ENST00000263708 H1FX-AS1Q4G0G2 97 aa7.22□□□□□ -1.25
PTPN4-201ENST00000263708 GIG44P09565 113 aaPredicted RBP7.2□□□□□ -1.26
PTPN4-201ENST00000263708 GCN1Q92616 2671 aaKnown RBP7.2□□□□□ -1.26
PTPN4-201ENST00000263708 KRTAP10-3P60369 221 aa7.19□□□□□ -1.26
PTPN4-201ENST00000263708 TNP2Q05952 138 aa7.19□□□□□ -1.26
PTPN4-201ENST00000263708 PLAC4Q8WY50 150 aa7.18□□□□□ -1.26
PTPN4-201ENST00000263708 PRAC1Q96KF2 57 aa7.16□□□□□ -1.26
PTPN4-201ENST00000263708 Q75L30 129 aa7.16□□□□□ -1.26
PTPN4-201ENST00000263708 NBEAL1Q6ZS30 2694 aa7.15□□□□□ -1.26
PTPN4-201ENST00000263708 ZCCHC13Q8WW36 166 aaKnown RBP7.15□□□□□ -1.26
PTPN4-201ENST00000263708 TEX15Q9BXT5 2789 aa7.15□□□□□ -1.26
PTPN4-201ENST00000263708 CHD6Q8TD26 2715 aa7.15□□□□□ -1.26
PTPN4-201ENST00000263708 NOTCH1P46531 2555 aa7.13□□□□□ -1.27
PTPN4-201ENST00000263708 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.13□□□□□ -1.27
PTPN4-201ENST00000263708 MAP1AP78559 2803 aaPredicted RBP7.12□□□□□ -1.27
PTPN4-201ENST00000263708 COL6A5A8TX70 2615 aa7.12□□□□□ -1.27
PTPN4-201ENST00000263708 OCR1Q9BZK8 76 aa7.1□□□□□ -1.27
PTPN4-201ENST00000263708 C10orf142B7Z368 130 aa7.1□□□□□ -1.27
PTPN4-201ENST00000263708 M0QZ58 72 aa7.1□□□□□ -1.27
PTPN4-201ENST00000263708 SEC61BP60468 96 aaKnown RBP7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 226.9 ms