RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 A8MWP4 228 aa12.32□□□□□ -0.44
SMARCC1-201ENST00000254480 IGFL1Q6UW32 110 aa12.32□□□□□ -0.44
SMARCC1-201ENST00000254480 C9orf129Q5T035 196 aaKnown RBP12.32□□□□□ -0.44
SMARCC1-201ENST00000254480 CASC10Q5T4H9 136 aa12.3□□□□□ -0.44
SMARCC1-201ENST00000254480 KLK9Q2XQG4 91 aa12.3□□□□□ -0.44
SMARCC1-201ENST00000254480 A0A096LNT2 108 aa12.29□□□□□ -0.44
SMARCC1-201ENST00000254480 OBSCN-AS1Q96MR7 158 aa12.29□□□□□ -0.44
SMARCC1-201ENST00000254480 MRPL34Q9BQ48 92 aaKnown RBP12.29□□□□□ -0.44
SMARCC1-201ENST00000254480 A0A1B0GW54 56 aa12.28□□□□□ -0.44
SMARCC1-201ENST00000254480 KCNQ1DNQ9H478 68 aa12.28□□□□□ -0.44
SMARCC1-201ENST00000254480 C19orf73Q9NVV2 129 aa12.28□□□□□ -0.44
SMARCC1-201ENST00000254480 LINC00528Q8N1L1 170 aa12.27□□□□□ -0.45
SMARCC1-201ENST00000254480 COX6B2Q6YFQ2 88 aa12.25□□□□□ -0.45
SMARCC1-201ENST00000254480 PRO0628Q9UI54 55 aa12.24□□□□□ -0.45
SMARCC1-201ENST00000254480 A0A087WTM6 91 aa12.23□□□□□ -0.45
SMARCC1-201ENST00000254480 Q8N377 158 aa12.23□□□□□ -0.45
SMARCC1-201ENST00000254480 PRR34Q9NV39 138 aa12.23□□□□□ -0.45
SMARCC1-201ENST00000254480 H3BPC8 53 aa12.22□□□□□ -0.45
SMARCC1-201ENST00000254480 COA5Q86WW8 74 aa12.21□□□□□ -0.46
SMARCC1-201ENST00000254480 LINC00304Q8N9R0 145 aa12.21□□□□□ -0.46
SMARCC1-201ENST00000254480 LINC01600Q96MT4 127 aa12.21□□□□□ -0.46
SMARCC1-201ENST00000254480 LOC101927531A0A1B0GV80 90 aa12.2□□□□□ -0.46
SMARCC1-201ENST00000254480 ATRQ13535 2644 aa12.19□□□□□ -0.46
SMARCC1-201ENST00000254480 ZNF861PO60384 105 aa12.19□□□□□ -0.46
SMARCC1-201ENST00000254480 A8MUN3 132 aa12.19□□□□□ -0.46
SMARCC1-201ENST00000254480 C8orf17Q9NRJ1 99 aa12.18□□□□□ -0.46
SMARCC1-201ENST00000254480 C8orf87E5RJ46 101 aa12.17□□□□□ -0.46
SMARCC1-201ENST00000254480 ERC2-IT1O76042 136 aa12.16□□□□□ -0.46
SMARCC1-201ENST00000254480 APLNQ9ULZ1 77 aa12.15□□□□□ -0.46
SMARCC1-201ENST00000254480 SSBP3-AS1Q7Z2R9 100 aa12.13□□□□□ -0.47
SMARCC1-201ENST00000254480 SPINT4Q6UDR6 99 aa12.13□□□□□ -0.47
SMARCC1-201ENST00000254480 PRR15Q8IV56 129 aa12.13□□□□□ -0.47
SMARCC1-201ENST00000254480 PSORS1C2Q9UIG4 136 aa12.12□□□□□ -0.47
SMARCC1-201ENST00000254480 KRTAP1-3Q8IUG1 177 aa12.12□□□□□ -0.47
SMARCC1-201ENST00000254480 C9orf163Q8N9P6 203 aa12.11□□□□□ -0.47
SMARCC1-201ENST00000254480 A0A1B0GVX0 72 aa12.1□□□□□ -0.47
SMARCC1-201ENST00000254480 CHD7Q9P2D1 2997 aa12.09□□□□□ -0.47
SMARCC1-201ENST00000254480 MAST4O15021 2626 aa12.08□□□□□ -0.47
SMARCC1-201ENST00000254480 RPS28P62857 69 aaKnown RBP12.08□□□□□ -0.48
SMARCC1-201ENST00000254480 LINC00612Q8N6U2 182 aa12.07□□□□□ -0.48
SMARCC1-201ENST00000254480 IGLV7-43P04211 117 aa12.06□□□□□ -0.48
SMARCC1-201ENST00000254480 KRTAP1-1Q07627 177 aa12.04□□□□□ -0.48
SMARCC1-201ENST00000254480 FLNAP21333 2647 aaKnown RBP12.04□□□□□ -0.48
SMARCC1-201ENST00000254480 CFAP54Q96N23 3096 aa12.04□□□□□ -0.48
SMARCC1-201ENST00000254480 LINC01554Q52M75 96 aa12.03□□□□□ -0.48
SMARCC1-201ENST00000254480 Q8N1X5 172 aa12.01□□□□□ -0.49
SMARCC1-201ENST00000254480 ITPR3Q14573 2671 aa11.99□□□□□ -0.49
SMARCC1-201ENST00000254480 IGLV5-37A0A075B6J1 123 aa11.99□□□□□ -0.49
SMARCC1-201ENST00000254480 TLX1NBP0CAT3 122 aa11.99□□□□□ -0.49
SMARCC1-201ENST00000254480 A0A1W2PNM2 257 aa11.98□□□□□ -0.49
SMARCC1-201ENST00000254480 SPRR4Q96PI1 79 aa11.98□□□□□ -0.49
SMARCC1-201ENST00000254480 RANBP2P49792 3224 aaKnown RBP11.98□□□□□ -0.49
SMARCC1-201ENST00000254480 UQCR11O14957 56 aa11.97□□□□□ -0.49
SMARCC1-201ENST00000254480 A0A0D9SG42 100 aa11.97□□□□□ -0.49
SMARCC1-201ENST00000254480 MKI67P46013 3256 aaKnown RBP11.97□□□□□ -0.49
SMARCC1-201ENST00000254480 LAMA3Q16787 3333 aa11.96□□□□□ -0.5
SMARCC1-201ENST00000254480 ZNF575Q86XF7 245 aa11.95□□□□□ -0.5
SMARCC1-201ENST00000254480 TNP2Q05952 138 aa11.95□□□□□ -0.5
SMARCC1-201ENST00000254480 PLA2G2DQ9UNK4 145 aa11.94□□□□□ -0.5
SMARCC1-201ENST00000254480 BRCA2P51587 3418 aa11.94□□□□□ -0.5
SMARCC1-201ENST00000254480 MIR22HGQ0VDD5 57 aa11.93□□□□□ -0.5
SMARCC1-201ENST00000254480 IGLV5-48A0A075B6I7 105 aa11.92□□□□□ -0.5
SMARCC1-201ENST00000254480 CENPEQ02224 2701 aa11.91□□□□□ -0.5
SMARCC1-201ENST00000254480 CR1P17927 2039 aa11.91□□□□□ -0.5
SMARCC1-201ENST00000254480 CNBPP62633 177 aaKnown RBP11.89□□□□□ -0.51
SMARCC1-201ENST00000254480 CFAP46Q8IYW2 2715 aa11.87□□□□□ -0.51
SMARCC1-201ENST00000254480 HELZ2Q9BYK8 2649 aaKnown RBP11.87□□□□□ -0.51
SMARCC1-201ENST00000254480 H7BZZ5 65 aa11.87□□□□□ -0.51
SMARCC1-201ENST00000254480 KLKP1Q107X0 134 aa11.87□□□□□ -0.51
SMARCC1-201ENST00000254480 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.85□□□□□ -0.51
SMARCC1-201ENST00000254480 LAMA2P24043 3122 aaKnown RBP11.84□□□□□ -0.51
SMARCC1-201ENST00000254480 CRIPTQ9P021 101 aa11.84□□□□□ -0.51
SMARCC1-201ENST00000254480 RBM12B-AS1Q9P1G2 102 aa11.82□□□□□ -0.52
SMARCC1-201ENST00000254480 CYP4F30PQ9H0H9 118 aa11.82□□□□□ -0.52
SMARCC1-201ENST00000254480 LINC00336Q6ZUF6 198 aa11.82□□□□□ -0.52
SMARCC1-201ENST00000254480 AKAP13Q12802 2813 aa11.8□□□□□ -0.52
SMARCC1-201ENST00000254480 PRR26Q8N8Z3 221 aa11.8□□□□□ -0.52
SMARCC1-201ENST00000254480 A0A0C4DFX4 3053 aa11.78□□□□□ -0.52
SMARCC1-201ENST00000254480 MGAQ8IWI9 3026 aa11.77□□□□□ -0.52
SMARCC1-201ENST00000254480 HTTP42858 3142 aa11.77□□□□□ -0.53
SMARCC1-201ENST00000254480 FAM104AQ969W3 186 aa11.77□□□□□ -0.53
SMARCC1-201ENST00000254480 PRUNE2Q8WUY3 3088 aa11.75□□□□□ -0.53
SMARCC1-201ENST00000254480 XIRP2A4UGR9 3374 aa11.74□□□□□ -0.53
SMARCC1-201ENST00000254480 WDFY4Q6ZS81 3184 aa11.71□□□□□ -0.54
SMARCC1-201ENST00000254480 CHD6Q8TD26 2715 aa11.69□□□□□ -0.54
SMARCC1-201ENST00000254480 CHD9Q3L8U1 2897 aa11.68□□□□□ -0.54
SMARCC1-201ENST00000254480 Q6ZSA8 131 aa11.67□□□□□ -0.54
SMARCC1-201ENST00000254480 UNC80Q8N2C7 3258 aa11.65□□□□□ -0.54
SMARCC1-201ENST00000254480 IGLV7-46A0A075B6I9 117 aa11.65□□□□□ -0.54
SMARCC1-201ENST00000254480 TEP1Q99973 2627 aaKnown RBP11.65□□□□□ -0.54
SMARCC1-201ENST00000254480 Q8NDZ9 215 aa11.63□□□□□ -0.55
SMARCC1-201ENST00000254480 TEX15Q9BXT5 2789 aa11.62□□□□□ -0.55
SMARCC1-201ENST00000254480 TRIOO75962 3097 aa11.61□□□□□ -0.55
SMARCC1-201ENST00000254480 CDC42SE1Q9NRR8 79 aa11.6□□□□□ -0.55
SMARCC1-201ENST00000254480 M0R2T5 61 aa11.58□□□□□ -0.56
SMARCC1-201ENST00000254480 OCR1Q9BZK8 76 aa11.58□□□□□ -0.56
SMARCC1-201ENST00000254480 STAB1Q9NY15 2570 aa11.58□□□□□ -0.56
SMARCC1-201ENST00000254480 SPANXA2-OT1Q8N9U9 137 aa11.56□□□□□ -0.56
SMARCC1-201ENST00000254480 HRES1P13985 223 aa11.55□□□□□ -0.56
SMARCC1-201ENST00000254480 FREM2Q5SZK8 3169 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms