RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NDUFC1O43677 76 aa9.56□□□□□ -0.88
SDC1-201ENST00000254351 ANK3Q12955 4377 aaKnown RBP9.55□□□□□ -0.88
SDC1-201ENST00000254351 CMC4P56277 68 aaPredicted RBP9.54□□□□□ -0.88
SDC1-201ENST00000254351 ESRGQ1W209 222 aa9.54□□□□□ -0.88
SDC1-201ENST00000254351 LINC00612Q8N6U2 182 aa9.54□□□□□ -0.88
SDC1-201ENST00000254351 ELOF1P60002 83 aaKnown RBP9.53□□□□□ -0.88
SDC1-201ENST00000254351 BCE1O60756 84 aa9.53□□□□□ -0.88
SDC1-201ENST00000254351 A0A0G2JQZ4 141 aa9.53□□□□□ -0.88
SDC1-201ENST00000254351 A0A1W2PNN7 141 aa9.53□□□□□ -0.88
SDC1-201ENST00000254351 DEFB116Q30KQ4 102 aa9.53□□□□□ -0.88
SDC1-201ENST00000254351 OCR1Q9BZK8 76 aa9.52□□□□□ -0.89
SDC1-201ENST00000254351 A0A0J9YWU9 116 aa9.52□□□□□ -0.89
SDC1-201ENST00000254351 IGHV4-30-4P0DP06 118 aa9.52□□□□□ -0.89
SDC1-201ENST00000254351 RPL37AP8A6NKH3 93 aa9.51□□□□□ -0.89
SDC1-201ENST00000254351 Q6ZRU5 148 aa9.51□□□□□ -0.89
SDC1-201ENST00000254351 V9GYY9 64 aa9.5□□□□□ -0.89
SDC1-201ENST00000254351 INAFM1C9JVW0 142 aa9.49□□□□□ -0.89
SDC1-201ENST00000254351 Q6ZTC4 211 aa9.49□□□□□ -0.89
SDC1-201ENST00000254351 VPREB1P12018 145 aa9.49□□□□□ -0.89
SDC1-201ENST00000254351 WFDC10BQ8IUB3 73 aa9.48□□□□□ -0.89
SDC1-201ENST00000254351 LINC00528Q8N1L1 170 aa9.46□□□□□ -0.89
SDC1-201ENST00000254351 ST20-AS1Q8NBB2 130 aa9.45□□□□□ -0.9
SDC1-201ENST00000254351 ATP5EP56381 51 aaPredicted RBP9.45□□□□□ -0.9
SDC1-201ENST00000254351 SEC61GP60059 68 aa9.45□□□□□ -0.9
SDC1-201ENST00000254351 Q6ZRP5 223 aa9.45□□□□□ -0.9
SDC1-201ENST00000254351 M0R378 163 aa9.44□□□□□ -0.9
SDC1-201ENST00000254351 C1orf64Q8NEQ6 169 aa9.44□□□□□ -0.9
SDC1-201ENST00000254351 KPRPQ5T749 579 aaPredicted RBP9.44□□□□□ -0.9
SDC1-201ENST00000254351 LELP1Q5T871 98 aa9.44□□□□□ -0.9
SDC1-201ENST00000254351 SRRM2Q9UQ35 2752 aaKnown RBP9.43□□□□□ -0.9
SDC1-201ENST00000254351 NSD1Q96L73 2696 aaPredicted RBP9.43□□□□□ -0.9
SDC1-201ENST00000254351 LYRM9A8MSI8 78 aa9.43□□□□□ -0.9
SDC1-201ENST00000254351 A8MU10 97 aa9.43□□□□□ -0.9
SDC1-201ENST00000254351 KRTAP10-3P60369 221 aa9.43□□□□□ -0.9
SDC1-201ENST00000254351 Q8N377 158 aa9.43□□□□□ -0.9
SDC1-201ENST00000254351 NKAPP1Q8N9T2 125 aa9.42□□□□□ -0.9
SDC1-201ENST00000254351 IGKV2D-24A0A075B6R9 120 aa9.42□□□□□ -0.9
SDC1-201ENST00000254351 SERTAD4-AS1Q5TG53 156 aa9.41□□□□□ -0.9
SDC1-201ENST00000254351 K7EQZ3 153 aa9.41□□□□□ -0.9
SDC1-201ENST00000254351 FAM168BA1KXE4 195 aa9.4□□□□□ -0.9
SDC1-201ENST00000254351 PRR34Q9NV39 138 aa9.4□□□□□ -0.9
SDC1-201ENST00000254351 TENM3Q9P273 2699 aa9.4□□□□□ -0.9
SDC1-201ENST00000254351 WFDC13Q8IUB5 93 aa9.4□□□□□ -0.91
SDC1-201ENST00000254351 CSMD3Q7Z407 3707 aa9.39□□□□□ -0.91
SDC1-201ENST00000254351 A0A1W2PNM2 257 aa9.39□□□□□ -0.91
SDC1-201ENST00000254351 C1orf137Q5JT78 98 aa9.38□□□□□ -0.91
SDC1-201ENST00000254351 H3BQ85 93 aa9.38□□□□□ -0.91
SDC1-201ENST00000254351 SPART-AS1P0CW21 52 aa9.38□□□□□ -0.91
SDC1-201ENST00000254351 FBN1P35555 2871 aaKnown RBP9.38□□□□□ -0.91
SDC1-201ENST00000254351 hDV103S1A0JD37 113 aa9.38□□□□□ -0.91
SDC1-201ENST00000254351 RETNQ9HD89 108 aa9.37□□□□□ -0.91
SDC1-201ENST00000254351 ERC2-IT1O76042 136 aa9.37□□□□□ -0.91
SDC1-201ENST00000254351 C7orf33Q8WU49 177 aa9.37□□□□□ -0.91
SDC1-201ENST00000254351 GVQW2A0A096LPI5 108 aaPredicted RBP9.36□□□□□ -0.91
SDC1-201ENST00000254351 F8WDY8 70 aa9.36□□□□□ -0.91
SDC1-201ENST00000254351 C15orf56Q8N910 161 aa9.36□□□□□ -0.91
SDC1-201ENST00000254351 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.35□□□□□ -0.91
SDC1-201ENST00000254351 EGFEM1PQ0D2K5 195 aa9.35□□□□□ -0.91
SDC1-201ENST00000254351 Q8NAQ8 132 aa9.35□□□□□ -0.91
SDC1-201ENST00000254351 MAST4O15021 2626 aa9.35□□□□□ -0.91
SDC1-201ENST00000254351 A8MUN3 132 aa9.35□□□□□ -0.91
SDC1-201ENST00000254351 NOTCH1P46531 2555 aa9.34□□□□□ -0.91
SDC1-201ENST00000254351 TRAV22A0A0B4J277 110 aa9.33□□□□□ -0.92
SDC1-201ENST00000254351 UBE2BP63146 152 aa9.33□□□□□ -0.92
SDC1-201ENST00000254351 Q9BRP9 147 aa9.32□□□□□ -0.92
SDC1-201ENST00000254351 ETDCA0A1B0GVM5 59 aa9.32□□□□□ -0.92
SDC1-201ENST00000254351 DSCR10P59022 87 aa9.32□□□□□ -0.92
SDC1-201ENST00000254351 RPL37AP61513 92 aaKnown RBP9.32□□□□□ -0.92
SDC1-201ENST00000254351 APOC4P55056 127 aa9.31□□□□□ -0.92
SDC1-201ENST00000254351 SYCNQ0VAF6 134 aa9.31□□□□□ -0.92
SDC1-201ENST00000254351 COL6A5A8TX70 2615 aa9.31□□□□□ -0.92
SDC1-201ENST00000254351 PMAIP1Q13794 54 aa9.3□□□□□ -0.92
SDC1-201ENST00000254351 LINC00208Q96KT6 92 aa9.29□□□□□ -0.92
SDC1-201ENST00000254351 SPTSSBQ8NFR3 76 aa9.27□□□□□ -0.92
SDC1-201ENST00000254351 IGLV5-48A0A075B6I7 105 aa9.27□□□□□ -0.93
SDC1-201ENST00000254351 PSCAO43653 123 aa9.27□□□□□ -0.93
SDC1-201ENST00000254351 Q6ZRX8 168 aa9.26□□□□□ -0.93
SDC1-201ENST00000254351 Q8NBF4 154 aa9.26□□□□□ -0.93
SDC1-201ENST00000254351 COL7A1Q02388 2944 aa9.26□□□□□ -0.93
SDC1-201ENST00000254351 CASC10Q5T4H9 136 aa9.25□□□□□ -0.93
SDC1-201ENST00000254351 KCNQ1DNQ9H478 68 aa9.25□□□□□ -0.93
SDC1-201ENST00000254351 A0A096LNI7 61 aa9.25□□□□□ -0.93
SDC1-201ENST00000254351 KRTAP26-1Q6PEX3 210 aa9.25□□□□□ -0.93
SDC1-201ENST00000254351 HCG22E2RYF7 251 aa9.25□□□□□ -0.93
SDC1-201ENST00000254351 NBEAL1Q6ZS30 2694 aa9.24□□□□□ -0.93
SDC1-201ENST00000254351 A0A087WSZ3 146 aa9.23□□□□□ -0.93
SDC1-201ENST00000254351 CHKB-CPT1BH3BT56 60 aa9.22□□□□□ -0.93
SDC1-201ENST00000254351 Q1T7F1 81 aa9.22□□□□□ -0.93
SDC1-201ENST00000254351 PRR15Q8IV56 129 aa9.22□□□□□ -0.93
SDC1-201ENST00000254351 PRLHP81277 87 aa9.21□□□□□ -0.93
SDC1-201ENST00000254351 LINC00476Q8WZB0 136 aa9.21□□□□□ -0.94
SDC1-201ENST00000254351 STAB1Q9NY15 2570 aa9.2□□□□□ -0.94
SDC1-201ENST00000254351 DHRS4-AS1Q9P1J3 65 aa9.2□□□□□ -0.94
SDC1-201ENST00000254351 KRTAP24-1Q3LI83 254 aa9.2□□□□□ -0.94
SDC1-201ENST00000254351 ZCCHC13Q8WW36 166 aaKnown RBP9.2□□□□□ -0.94
SDC1-201ENST00000254351 IGKV2-24A0A0C4DH68 120 aa9.19□□□□□ -0.94
SDC1-201ENST00000254351 MP68P56378 58 aa9.19□□□□□ -0.94
SDC1-201ENST00000254351 PRR15LQ9BU68 103 aa9.18□□□□□ -0.94
SDC1-201ENST00000254351 OXLD1Q5BKU9 147 aa9.17□□□□□ -0.94
SDC1-201ENST00000254351 IGLV1-50A0A075B6I6 118 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms