RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TLX1NBP0CAT3 122 aa12.19□□□□□ -0.46
CPSF3-201ENST00000238112 NREPQ16612 68 aa12.17□□□□□ -0.46
CPSF3-201ENST00000238112 TENM3Q9P273 2699 aa12.17□□□□□ -0.46
CPSF3-201ENST00000238112 MRAPQ8TCY5 172 aa12.17□□□□□ -0.46
CPSF3-201ENST00000238112 KRTAP24-1Q3LI83 254 aa12.16□□□□□ -0.46
CPSF3-201ENST00000238112 DHRS4-AS1Q9P1J3 65 aa12.16□□□□□ -0.46
CPSF3-201ENST00000238112 PLA2G2DQ9UNK4 145 aa12.16□□□□□ -0.46
CPSF3-201ENST00000238112 ANK2Q01484 3957 aa12.16□□□□□ -0.46
CPSF3-201ENST00000238112 Q8N377 158 aa12.16□□□□□ -0.46
CPSF3-201ENST00000238112 RPL37AP8A6NKH3 93 aa12.15□□□□□ -0.46
CPSF3-201ENST00000238112 KLKP1Q107X0 134 aa12.15□□□□□ -0.46
CPSF3-201ENST00000238112 FAM236DA0A1B0GTK5 79 aa12.15□□□□□ -0.46
CPSF3-201ENST00000238112 FAM236CP0DP71 79 aa12.15□□□□□ -0.46
CPSF3-201ENST00000238112 H7BZZ5 65 aa12.14□□□□□ -0.47
CPSF3-201ENST00000238112 C3orf84H3BNL1 204 aa12.14□□□□□ -0.47
CPSF3-201ENST00000238112 OXTP01178 125 aa12.14□□□□□ -0.47
CPSF3-201ENST00000238112 Q6ZRX8 168 aa12.14□□□□□ -0.47
CPSF3-201ENST00000238112 LINC00588Q9Y4M8 146 aa12.14□□□□□ -0.47
CPSF3-201ENST00000238112 PRYO14603 147 aa12.13□□□□□ -0.47
CPSF3-201ENST00000238112 TM2D3Q9BRN9 247 aa12.13□□□□□ -0.47
CPSF3-201ENST00000238112 SNURFQ9Y675 71 aa12.13□□□□□ -0.47
CPSF3-201ENST00000238112 ETDCA0A1B0GVM5 59 aa12.12□□□□□ -0.47
CPSF3-201ENST00000238112 FAM168BA1KXE4 195 aa12.12□□□□□ -0.47
CPSF3-201ENST00000238112 Q8N9L7 120 aa12.12□□□□□ -0.47
CPSF3-201ENST00000238112 IGLV1-50A0A075B6I6 118 aa12.11□□□□□ -0.47
CPSF3-201ENST00000238112 IGLV5-48A0A075B6I7 105 aa12.11□□□□□ -0.47
CPSF3-201ENST00000238112 BPY2O14599 106 aa12.11□□□□□ -0.47
CPSF3-201ENST00000238112 IGLV5-37A0A075B6J1 123 aa12.11□□□□□ -0.47
CPSF3-201ENST00000238112 CASC10Q5T4H9 136 aa12.11□□□□□ -0.47
CPSF3-201ENST00000238112 RMI2Q96E14 147 aa12.1□□□□□ -0.47
CPSF3-201ENST00000238112 IGKV4-1P06312 121 aa12.1□□□□□ -0.47
CPSF3-201ENST00000238112 Q9BRP9 147 aa12.1□□□□□ -0.47
CPSF3-201ENST00000238112 KRTAP4-16G5E9R7 235 aaPredicted RBP12.09□□□□□ -0.47
CPSF3-201ENST00000238112 FUSP35637 526 aaKnown RBP eCLIP12.09□□□□□ -0.47
CPSF3-201ENST00000238112 SPRR1AP35321 89 aa12.08□□□□□ -0.48
CPSF3-201ENST00000238112 F8P00451 2351 aa12.07□□□□□ -0.48
CPSF3-201ENST00000238112 F8WEM9 126 aa12.05□□□□□ -0.48
CPSF3-201ENST00000238112 MRPL55Q7Z7F7 128 aaKnown RBP12.05□□□□□ -0.48
CPSF3-201ENST00000238112 A0A1B0GW54 56 aa12.04□□□□□ -0.48
CPSF3-201ENST00000238112 ST20-AS1Q8NBB2 130 aa12.04□□□□□ -0.48
CPSF3-201ENST00000238112 NDUFC1O43677 76 aa12.04□□□□□ -0.48
CPSF3-201ENST00000238112 C1orf137Q5JT78 98 aa12.04□□□□□ -0.48
CPSF3-201ENST00000238112 KRTAP7-1Q8IUC3 87 aa12.04□□□□□ -0.48
CPSF3-201ENST00000238112 CMYA5Q8N3K9 4069 aa12.03□□□□□ -0.48
CPSF3-201ENST00000238112 STAB1Q9NY15 2570 aa12.03□□□□□ -0.48
CPSF3-201ENST00000238112 SERP1Q9Y6X1 66 aa12.03□□□□□ -0.48
CPSF3-201ENST00000238112 A0A1W2PNM2 257 aa12.02□□□□□ -0.49
CPSF3-201ENST00000238112 TNP2Q05952 138 aa12.02□□□□□ -0.49
CPSF3-201ENST00000238112 FLNBO75369 2602 aaKnown RBP12.01□□□□□ -0.49
CPSF3-201ENST00000238112 ERC2-IT1O76042 136 aa12.01□□□□□ -0.49
CPSF3-201ENST00000238112 PRB2P02812 416 aaPredicted RBP12.01□□□□□ -0.49
CPSF3-201ENST00000238112 UBE2BP63146 152 aa12.01□□□□□ -0.49
CPSF3-201ENST00000238112 TMEM254Q8TBM7 123 aa12.01□□□□□ -0.49
CPSF3-201ENST00000238112 FBN1P35555 2871 aaKnown RBP11.99□□□□□ -0.49
CPSF3-201ENST00000238112 C5orf47Q569G3 176 aa11.99□□□□□ -0.49
CPSF3-201ENST00000238112 Q8NBF4 154 aa11.99□□□□□ -0.49
CPSF3-201ENST00000238112 DNAH3Q8TD57 4116 aa11.98□□□□□ -0.49
CPSF3-201ENST00000238112 OCR1Q9BZK8 76 aa11.98□□□□□ -0.49
CPSF3-201ENST00000238112 Q5XG85 94 aa11.97□□□□□ -0.49
CPSF3-201ENST00000238112 REG3GQ6UW15 175 aa11.97□□□□□ -0.49
CPSF3-201ENST00000238112 EPM2AB3EWF7 344 aa11.95□□□□□ -0.5
CPSF3-201ENST00000238112 C4orf26Q17RF5 130 aa11.95□□□□□ -0.5
CPSF3-201ENST00000238112 SPRR4Q96PI1 79 aa11.94□□□□□ -0.5
CPSF3-201ENST00000238112 NOTCH1P46531 2555 aa11.94□□□□□ -0.5
CPSF3-201ENST00000238112 MAST4O15021 2626 aa11.94□□□□□ -0.5
CPSF3-201ENST00000238112 ATP5EP56381 51 aaPredicted RBP11.93□□□□□ -0.5
CPSF3-201ENST00000238112 DNAH1Q9P2D7 4330 aa11.9□□□□□ -0.5
CPSF3-201ENST00000238112 A0A0U1RQV1 116 aa11.9□□□□□ -0.5
CPSF3-201ENST00000238112 K7EIL1 84 aa11.9□□□□□ -0.5
CPSF3-201ENST00000238112 SMIM29Q86T20 159 aa11.9□□□□□ -0.5
CPSF3-201ENST00000238112 HRCT1Q6UXD1 115 aa11.89□□□□□ -0.51
CPSF3-201ENST00000238112 LINC00476Q8WZB0 136 aa11.88□□□□□ -0.51
CPSF3-201ENST00000238112 A0A096LNI7 61 aa11.87□□□□□ -0.51
CPSF3-201ENST00000238112 IGKV2-24A0A0C4DH68 120 aa11.87□□□□□ -0.51
CPSF3-201ENST00000238112 FAM30AQ9NZY2 134 aa11.87□□□□□ -0.51
CPSF3-201ENST00000238112 C16orf90A8MZG2 172 aa11.86□□□□□ -0.51
CPSF3-201ENST00000238112 PSCAO43653 123 aa11.85□□□□□ -0.51
CPSF3-201ENST00000238112 DSCR10P59022 87 aa11.85□□□□□ -0.51
CPSF3-201ENST00000238112 PRLHP81277 87 aa11.85□□□□□ -0.51
CPSF3-201ENST00000238112 HIGD2AQ9BW72 106 aa11.85□□□□□ -0.51
CPSF3-201ENST00000238112 CNBPP62633 177 aaKnown RBP11.83□□□□□ -0.51
CPSF3-201ENST00000238112 SMIM26A0A096LP01 95 aa11.83□□□□□ -0.52
CPSF3-201ENST00000238112 K7EQZ3 153 aa11.83□□□□□ -0.52
CPSF3-201ENST00000238112 KRTAP1-5Q9BYS1 174 aa11.83□□□□□ -0.52
CPSF3-201ENST00000238112 A0A1W2PNN7 141 aa11.82□□□□□ -0.52
CPSF3-201ENST00000238112 IGFL1Q6UW32 110 aa11.81□□□□□ -0.52
CPSF3-201ENST00000238112 HUWE1Q7Z6Z7 4374 aaKnown RBP11.8□□□□□ -0.52
CPSF3-201ENST00000238112 BAHCC1Q9P281 2608 aa11.8□□□□□ -0.52
CPSF3-201ENST00000238112 A0A0G2JQZ4 141 aa11.8□□□□□ -0.52
CPSF3-201ENST00000238112 NBEAL1Q6ZS30 2694 aa11.79□□□□□ -0.52
CPSF3-201ENST00000238112 UBE2DNLQ8IWF7 75 aa11.79□□□□□ -0.52
CPSF3-201ENST00000238112 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.77□□□□□ -0.52
CPSF3-201ENST00000238112 LCE6AA0A183 80 aa11.76□□□□□ -0.53
CPSF3-201ENST00000238112 HCG22E2RYF7 251 aa11.76□□□□□ -0.53
CPSF3-201ENST00000238112 FP248Q71RG6 208 aaPredicted RBP11.76□□□□□ -0.53
CPSF3-201ENST00000238112 IGLV8-61A0A075B6I0 122 aa11.75□□□□□ -0.53
CPSF3-201ENST00000238112 UBE2AP49459 152 aa11.75□□□□□ -0.53
CPSF3-201ENST00000238112 C14orf177Q52M58 125 aa11.75□□□□□ -0.53
CPSF3-201ENST00000238112 COL6A5A8TX70 2615 aa11.74□□□□□ -0.53
CPSF3-201ENST00000238112 A0A087WSZ3 146 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms