RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 CTAG1AP78358 180 aa10.69□□□□□ -0.7
CLN6-220ENST00000637450 PMCHL1Q16048 86 aa10.69□□□□□ -0.7
CLN6-220ENST00000637450 BAGE3Q86Y29 109 aa10.69□□□□□ -0.7
CLN6-220ENST00000637450 PLEKHB2Q96CS7 222 aa10.69□□□□□ -0.7
CLN6-220ENST00000637450 TRAPPC1Q9Y5R8 145 aa10.69□□□□□ -0.7
CLN6-220ENST00000637450 SFTA2Q6UW10 78 aa10.68□□□□□ -0.7
CLN6-220ENST00000637450 TMEM170BQ5T4T1 132 aa10.67□□□□□ -0.7
CLN6-220ENST00000637450 CBLN2Q8IUK8 224 aa10.66□□□□□ -0.7
CLN6-220ENST00000637450 LINC00158P58513 81 aa10.63□□□□□ -0.71
CLN6-220ENST00000637450 TPRXLQ17RH7 258 aa10.63□□□□□ -0.71
CLN6-220ENST00000637450 C3orf22Q8N5N4 141 aa10.63□□□□□ -0.71
CLN6-220ENST00000637450 CHTOPQ9Y3Y2 248 aaKnown RBP10.63□□□□□ -0.71
CLN6-220ENST00000637450 IGLV7-46A0A075B6I9 117 aa10.62□□□□□ -0.71
CLN6-220ENST00000637450 HIGD2AQ9BW72 106 aa10.62□□□□□ -0.71
CLN6-220ENST00000637450 CDIP1Q9H305 208 aa10.61□□□□□ -0.71
CLN6-220ENST00000637450 A0A0U1RRA0 63 aa10.6□□□□□ -0.71
CLN6-220ENST00000637450 TMEM223A0PJW6 202 aa10.6□□□□□ -0.71
CLN6-220ENST00000637450 SPRR4Q96PI1 79 aa10.6□□□□□ -0.71
CLN6-220ENST00000637450 LCE2AQ5TA79 106 aaPredicted RBP10.59□□□□□ -0.71
CLN6-220ENST00000637450 TRAV12-1A0A0B4J245 112 aa10.58□□□□□ -0.72
CLN6-220ENST00000637450 SPAG11AQ6PDA7 123 aa10.58□□□□□ -0.72
CLN6-220ENST00000637450 SMIM13P0DJ93 91 aa10.56□□□□□ -0.72
CLN6-220ENST00000637450 PPDPFQ9H3Y8 114 aa10.56□□□□□ -0.72
CLN6-220ENST00000637450 APOC3P02656 99 aa10.55□□□□□ -0.72
CLN6-220ENST00000637450 IFI27L1Q96BM0 104 aa10.55□□□□□ -0.72
CLN6-220ENST00000637450 CHCHD1Q96BP2 118 aaKnown RBP10.55□□□□□ -0.72
CLN6-220ENST00000637450 PRYO14603 147 aa10.54□□□□□ -0.72
CLN6-220ENST00000637450 ATP6V1G1O75348 118 aa10.54□□□□□ -0.72
CLN6-220ENST00000637450 BOD1L2Q8IYS8 172 aa10.54□□□□□ -0.72
CLN6-220ENST00000637450 KCNQ1DNQ9H478 68 aa10.54□□□□□ -0.72
CLN6-220ENST00000637450 ZNF706Q9Y5V0 76 aaPredicted RBP10.54□□□□□ -0.72
CLN6-220ENST00000637450 SPRR1AP35321 89 aa10.53□□□□□ -0.72
CLN6-220ENST00000637450 LINC00337Q8N6G1 96 aa10.53□□□□□ -0.72
CLN6-220ENST00000637450 KRTAP9-2Q9BYQ4 174 aa10.53□□□□□ -0.72
CLN6-220ENST00000637450 SNAPINO95295 136 aa10.52□□□□□ -0.73
CLN6-220ENST00000637450 MEIG1Q5JSS6 88 aa10.52□□□□□ -0.73
CLN6-220ENST00000637450 MIR7-3HGQ8N6C7 128 aa10.52□□□□□ -0.73
CLN6-220ENST00000637450 KRTAP4-16G5E9R7 235 aaPredicted RBP10.51□□□□□ -0.73
CLN6-220ENST00000637450 NCR3O14931 201 aa10.51□□□□□ -0.73
CLN6-220ENST00000637450 HERV-K104P63124 156 aa10.51□□□□□ -0.73
CLN6-220ENST00000637450 C4orf48Q5BLP8 95 aa10.51□□□□□ -0.73
CLN6-220ENST00000637450 SVBPQ8N300 66 aa10.51□□□□□ -0.73
CLN6-220ENST00000637450 SMCR5Q8TEV8 140 aa10.51□□□□□ -0.73
CLN6-220ENST00000637450 YPEL4Q96NS1 127 aa10.51□□□□□ -0.73
CLN6-220ENST00000637450 LINC00587B1AMM8 73 aa10.5□□□□□ -0.73
CLN6-220ENST00000637450 FP248Q71RG6 208 aaPredicted RBP10.5□□□□□ -0.73
CLN6-220ENST00000637450 DAND5Q8N907 189 aa10.49□□□□□ -0.73
CLN6-220ENST00000637450 Q8NBF4 154 aa10.49□□□□□ -0.73
CLN6-220ENST00000637450 ETDCA0A1B0GVM5 59 aa10.48□□□□□ -0.73
CLN6-220ENST00000637450 NDUFA5Q16718 116 aa10.48□□□□□ -0.73
CLN6-220ENST00000637450 NDUFA12Q9UI09 145 aa10.48□□□□□ -0.73
CLN6-220ENST00000637450 TRBV10-3A0A0K0K1G6 114 aa10.47□□□□□ -0.73
CLN6-220ENST00000637450 MYMXA0A1B0GTQ4 84 aa10.47□□□□□ -0.73
CLN6-220ENST00000637450 LINC00483Q53H64 154 aa10.46□□□□□ -0.73
CLN6-220ENST00000637450 FAM19A2Q8N3H0 131 aa10.46□□□□□ -0.73
CLN6-220ENST00000637450 MAP1LC3CQ9BXW4 147 aa10.45□□□□□ -0.74
CLN6-220ENST00000637450 LOC107984156A0A0G2JMH3 177 aa10.44□□□□□ -0.74
CLN6-220ENST00000637450 HSBP1O75506 76 aa10.44□□□□□ -0.74
CLN6-220ENST00000637450 SPINK1P00995 79 aa10.44□□□□□ -0.74
CLN6-220ENST00000637450 ARL17AQ8IVW1 177 aa10.44□□□□□ -0.74
CLN6-220ENST00000637450 B5MCH6 92 aa10.43□□□□□ -0.74
CLN6-220ENST00000637450 KRTAP13-3Q3SY46 172 aa10.43□□□□□ -0.74
CLN6-220ENST00000637450 TSPEAR-AS2P59090 65 aa10.42□□□□□ -0.74
CLN6-220ENST00000637450 S100A12P80511 92 aa10.42□□□□□ -0.74
CLN6-220ENST00000637450 GAGE2AQ6NT46 116 aa10.42□□□□□ -0.74
CLN6-220ENST00000637450 H0Y8G0 127 aa10.41□□□□□ -0.74
CLN6-220ENST00000637450 TRBV10-2A0A0K0K1G8 114 aa10.4□□□□□ -0.74
CLN6-220ENST00000637450 LEPROTO15243 131 aa10.4□□□□□ -0.74
CLN6-220ENST00000637450 ERC2-IT1O76042 136 aa10.4□□□□□ -0.74
CLN6-220ENST00000637450 DDTP30046 118 aa10.4□□□□□ -0.74
CLN6-220ENST00000637450 LEPROTL1O95214 131 aa10.38□□□□□ -0.75
CLN6-220ENST00000637450 ASB16-AS1Q495Z4 193 aa10.38□□□□□ -0.75
CLN6-220ENST00000637450 SSBP3-AS1Q7Z2R9 100 aa10.38□□□□□ -0.75
CLN6-220ENST00000637450 Q9BRP9 147 aa10.38□□□□□ -0.75
CLN6-220ENST00000637450 IGLV9-49A0A0B4J1Y8 123 aa10.37□□□□□ -0.75
CLN6-220ENST00000637450 PLNP26678 52 aa10.37□□□□□ -0.75
CLN6-220ENST00000637450 MOBPQ13875 183 aa10.37□□□□□ -0.75
CLN6-220ENST00000637450 J3QQQ9 107 aa10.36□□□□□ -0.75
CLN6-220ENST00000637450 LINC00310P59036 64 aa10.36□□□□□ -0.75
CLN6-220ENST00000637450 RPS29P62273 56 aaKnown RBP10.36□□□□□ -0.75
CLN6-220ENST00000637450 TRGC2P03986 189 aa10.35□□□□□ -0.75
CLN6-220ENST00000637450 Q6ZRX8 168 aa10.35□□□□□ -0.75
CLN6-220ENST00000637450 SPANXB1Q9NS25 103 aaPredicted RBP10.35□□□□□ -0.75
CLN6-220ENST00000637450 SERF1AO75920 110 aa10.34□□□□□ -0.75
CLN6-220ENST00000637450 IGLV6-57P01721 117 aa10.34□□□□□ -0.75
CLN6-220ENST00000637450 NMUP48645 174 aa10.34□□□□□ -0.75
CLN6-220ENST00000637450 Q8N377 158 aa10.34□□□□□ -0.75
CLN6-220ENST00000637450 NDUFC2O95298 119 aa10.33□□□□□ -0.76
CLN6-220ENST00000637450 DPM2O94777 84 aa10.32□□□□□ -0.76
CLN6-220ENST00000637450 HERVK_113P61574 105 aa10.32□□□□□ -0.76
CLN6-220ENST00000637450 S100A7L2Q5SY68 101 aa10.32□□□□□ -0.76
CLN6-220ENST00000637450 MIEN1Q9BRT3 115 aa10.32□□□□□ -0.76
CLN6-220ENST00000637450 HSPB8Q9UJY1 196 aa10.32□□□□□ -0.76
CLN6-220ENST00000637450 LGALS3P17931 250 aaKnown RBP10.31□□□□□ -0.76
CLN6-220ENST00000637450 PMCHL2Q9BQD1 86 aa10.31□□□□□ -0.76
CLN6-220ENST00000637450 KRTAP4-1Q9BYQ7 146 aa10.31□□□□□ -0.76
CLN6-220ENST00000637450 SLC25A20O43772 301 aa10.3□□□□□ -0.76
CLN6-220ENST00000637450 IGKCP01834 107 aa10.3□□□□□ -0.76
CLN6-220ENST00000637450 FABP4P15090 132 aa10.3□□□□□ -0.76
CLN6-220ENST00000637450 SEC61BP60468 96 aaKnown RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms