RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 Q8NDZ9 215 aa8.8□□□□□ -1
PDLIM3-213ENST00000629667 IGLV5-39A0A0G2JS06 123 aa8.79□□□□□ -1
PDLIM3-213ENST00000629667 ZNF625Q96I27 306 aaPredicted RBP8.79□□□□□ -1
PDLIM3-213ENST00000629667 NDUFA12Q9UI09 145 aa8.78□□□□□ -1
PDLIM3-213ENST00000629667 LINC01546A6NGU7 62 aa8.77□□□□□ -1.01
PDLIM3-213ENST00000629667 IGLC3P0DOY3 106 aa8.76□□□□□ -1.01
PDLIM3-213ENST00000629667 NDUFA6P56556 154 aa8.76□□□□□ -1.01
PDLIM3-213ENST00000629667 ZNF22P17026 224 aaPredicted RBP8.75□□□□□ -1.01
PDLIM3-213ENST00000629667 SMCO4Q9NRQ5 59 aa8.75□□□□□ -1.01
PDLIM3-213ENST00000629667 SFTA2Q6UW10 78 aa8.74□□□□□ -1.01
PDLIM3-213ENST00000629667 FA2HQ7L5A8 372 aa8.74□□□□□ -1.01
PDLIM3-213ENST00000629667 LINC00158P58513 81 aa8.73□□□□□ -1.01
PDLIM3-213ENST00000629667 FAM19A2Q8N3H0 131 aa8.73□□□□□ -1.01
PDLIM3-213ENST00000629667 SMCR5Q8TEV8 140 aa8.73□□□□□ -1.01
PDLIM3-213ENST00000629667 PRYO14603 147 aa8.71□□□□□ -1.02
PDLIM3-213ENST00000629667 IFITM2Q01629 132 aa8.71□□□□□ -1.02
PDLIM3-213ENST00000629667 TRAV9-1A0A075B6T8 112 aa8.7□□□□□ -1.02
PDLIM3-213ENST00000629667 A0A0U1RRA0 63 aa8.7□□□□□ -1.02
PDLIM3-213ENST00000629667 Q8N377 158 aa8.7□□□□□ -1.02
PDLIM3-213ENST00000629667 ETDCA0A1B0GVM5 59 aa8.69□□□□□ -1.02
PDLIM3-213ENST00000629667 RPS29P62273 56 aaKnown RBP8.69□□□□□ -1.02
PDLIM3-213ENST00000629667 TMEM170BQ5T4T1 132 aa8.69□□□□□ -1.02
PDLIM3-213ENST00000629667 XP32Q5T750 250 aa8.69□□□□□ -1.02
PDLIM3-213ENST00000629667 GAGE2AQ6NT46 116 aa8.69□□□□□ -1.02
PDLIM3-213ENST00000629667 IGLV9-49A0A0B4J1Y8 123 aa8.68□□□□□ -1.02
PDLIM3-213ENST00000629667 SPRR1AP35321 89 aa8.68□□□□□ -1.02
PDLIM3-213ENST00000629667 MOBPQ13875 183 aa8.68□□□□□ -1.02
PDLIM3-213ENST00000629667 LINC00483Q53H64 154 aa8.68□□□□□ -1.02
PDLIM3-213ENST00000629667 SLC25A20O43772 301 aa8.67□□□□□ -1.02
PDLIM3-213ENST00000629667 ATP6V1G1O75348 118 aa8.67□□□□□ -1.02
PDLIM3-213ENST00000629667 LCE2CQ5TA81 110 aa8.67□□□□□ -1.02
PDLIM3-213ENST00000629667 KCNQ1DNQ9H478 68 aa8.67□□□□□ -1.02
PDLIM3-213ENST00000629667 C11orf86A6NJI1 115 aa8.66□□□□□ -1.02
PDLIM3-213ENST00000629667 NCR3O14931 201 aa8.66□□□□□ -1.02
PDLIM3-213ENST00000629667 SSBP3-AS1Q7Z2R9 100 aa8.66□□□□□ -1.02
PDLIM3-213ENST00000629667 BOD1L2Q8IYS8 172 aa8.66□□□□□ -1.02
PDLIM3-213ENST00000629667 A0A096LNJ9 63 aa8.65□□□□□ -1.02
PDLIM3-213ENST00000629667 KRTAP4-16G5E9R7 235 aaPredicted RBP8.65□□□□□ -1.02
PDLIM3-213ENST00000629667 S100PP25815 95 aa8.65□□□□□ -1.02
PDLIM3-213ENST00000629667 CLLU1Q5K131 121 aa8.65□□□□□ -1.02
PDLIM3-213ENST00000629667 BAGE3Q86Y29 109 aa8.65□□□□□ -1.02
PDLIM3-213ENST00000629667 S100A12P80511 92 aa8.64□□□□□ -1.03
PDLIM3-213ENST00000629667 FABP9Q0Z7S8 132 aa8.64□□□□□ -1.03
PDLIM3-213ENST00000629667 HBDP02042 147 aa8.63□□□□□ -1.03
PDLIM3-213ENST00000629667 SMIM13P0DJ93 91 aa8.63□□□□□ -1.03
PDLIM3-213ENST00000629667 COX19Q49B96 90 aa8.63□□□□□ -1.03
PDLIM3-213ENST00000629667 TRBV10-3A0A0K0K1G6 114 aa8.62□□□□□ -1.03
PDLIM3-213ENST00000629667 CFC1BP0CG36 223 aa8.62□□□□□ -1.03
PDLIM3-213ENST00000629667 MEIG1Q5JSS6 88 aa8.62□□□□□ -1.03
PDLIM3-213ENST00000629667 LINC00614P0C842 121 aa8.61□□□□□ -1.03
PDLIM3-213ENST00000629667 MT1HP80294 61 aa8.61□□□□□ -1.03
PDLIM3-213ENST00000629667 PMCHL1Q16048 86 aa8.61□□□□□ -1.03
PDLIM3-213ENST00000629667 MIR7-3HGQ8N6C7 128 aa8.61□□□□□ -1.03
PDLIM3-213ENST00000629667 B5MCH6 92 aa8.6□□□□□ -1.03
PDLIM3-213ENST00000629667 ERC2-IT1O76042 136 aa8.6□□□□□ -1.03
PDLIM3-213ENST00000629667 KRTAP19-2Q3LHN2 52 aa8.6□□□□□ -1.03
PDLIM3-213ENST00000629667 URB1-AS1Q96HZ7 61 aa8.59□□□□□ -1.03
PDLIM3-213ENST00000629667 CHTOPQ9Y3Y2 248 aaKnown RBP8.59□□□□□ -1.03
PDLIM3-213ENST00000629667 TMEM223A0PJW6 202 aa8.58□□□□□ -1.04
PDLIM3-213ENST00000629667 SEC11CQ9BY50 192 aa8.58□□□□□ -1.04
PDLIM3-213ENST00000629667 C9orf153Q5TBE3 101 aa8.57□□□□□ -1.04
PDLIM3-213ENST00000629667 KRTAP3-3Q9BYR6 98 aa8.57□□□□□ -1.04
PDLIM3-213ENST00000629667 KRTAP3-2Q9BYR7 98 aa8.57□□□□□ -1.04
PDLIM3-213ENST00000629667 IGLV8-61A0A075B6I0 122 aa8.56□□□□□ -1.04
PDLIM3-213ENST00000629667 LINC00587B1AMM8 73 aa8.56□□□□□ -1.04
PDLIM3-213ENST00000629667 HERV-K104P63124 156 aa8.56□□□□□ -1.04
PDLIM3-213ENST00000629667 PCOTHQ58A44 107 aa8.56□□□□□ -1.04
PDLIM3-213ENST00000629667 C18orf32Q8TCD1 76 aa8.56□□□□□ -1.04
PDLIM3-213ENST00000629667 Q9BRP9 147 aa8.56□□□□□ -1.04
PDLIM3-213ENST00000629667 TMEM218A2RU14 115 aa8.55□□□□□ -1.04
PDLIM3-213ENST00000629667 DDTP30046 118 aa8.54□□□□□ -1.04
PDLIM3-213ENST00000629667 Q6ZRX8 168 aa8.54□□□□□ -1.04
PDLIM3-213ENST00000629667 MAP1LC3CQ9BXW4 147 aa8.54□□□□□ -1.04
PDLIM3-213ENST00000629667 UQCC3Q6UW78 93 aa8.53□□□□□ -1.04
PDLIM3-213ENST00000629667 LORP23490 312 aaPredicted RBP8.52□□□□□ -1.05
PDLIM3-213ENST00000629667 TRAPPC1Q9Y5R8 145 aa8.52□□□□□ -1.05
PDLIM3-213ENST00000629667 KRTAP10-6P60371 365 aaPredicted RBP8.51□□□□□ -1.05
PDLIM3-213ENST00000629667 COMMD7Q86VX2 200 aa8.51□□□□□ -1.05
PDLIM3-213ENST00000629667 TRAV12-1A0A0B4J245 112 aa8.5□□□□□ -1.05
PDLIM3-213ENST00000629667 TRBV10-2A0A0K0K1G8 114 aa8.5□□□□□ -1.05
PDLIM3-213ENST00000629667 MYMXA0A1B0GTQ4 84 aa8.5□□□□□ -1.05
PDLIM3-213ENST00000629667 C9orf92A6NGG3 77 aa8.5□□□□□ -1.05
PDLIM3-213ENST00000629667 JOSD1Q15040 202 aaPredicted RBP8.5□□□□□ -1.05
PDLIM3-213ENST00000629667 LIMD2Q9BT23 127 aa8.49□□□□□ -1.05
PDLIM3-213ENST00000629667 M0R2T5 61 aa8.48□□□□□ -1.05
PDLIM3-213ENST00000629667 S100A7L2Q5SY68 101 aa8.48□□□□□ -1.05
PDLIM3-213ENST00000629667 IFI27L1Q96BM0 104 aa8.48□□□□□ -1.05
PDLIM3-213ENST00000629667 LOC107984156A0A0G2JMH3 177 aa8.47□□□□□ -1.05
PDLIM3-213ENST00000629667 ARL17AQ8IVW1 177 aa8.47□□□□□ -1.05
PDLIM3-213ENST00000629667 MIEN1Q9BRT3 115 aa8.47□□□□□ -1.05
PDLIM3-213ENST00000629667 RPS10P5Q9NQ39 176 aa8.47□□□□□ -1.05
PDLIM3-213ENST00000629667 SPANXB1Q9NS25 103 aaPredicted RBP8.47□□□□□ -1.05
PDLIM3-213ENST00000629667 HRCT1Q6UXD1 115 aa8.46□□□□□ -1.06
PDLIM3-213ENST00000629667 ST20-AS1Q8NBB2 130 aa8.46□□□□□ -1.06
PDLIM3-213ENST00000629667 TRAV23DV6A0A075B6W5 121 aa8.45□□□□□ -1.06
PDLIM3-213ENST00000629667 RHEBQ15382 184 aa8.45□□□□□ -1.06
PDLIM3-213ENST00000629667 C10orf91Q5T1B1 145 aa8.45□□□□□ -1.06
PDLIM3-213ENST00000629667 IGLV6-57P01721 117 aa8.44□□□□□ -1.06
PDLIM3-213ENST00000629667 C5orf52A6NGY3 159 aa8.43□□□□□ -1.06
PDLIM3-213ENST00000629667 ZNF73O43830 326 aaPredicted RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms