RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 KRTAP9-6A0A140TA67 174 aa13.57□□□□□ -0.24
CPSF1-214ENST00000622776 SPRR4Q96PI1 79 aa13.56□□□□□ -0.24
CPSF1-214ENST00000622776 UQCC3Q6UW78 93 aa13.55□□□□□ -0.24
CPSF1-214ENST00000622776 SFTA2Q6UW10 78 aa13.54□□□□□ -0.24
CPSF1-214ENST00000622776 C11orf86A6NJI1 115 aa13.53□□□□□ -0.24
CPSF1-214ENST00000622776 FP248Q71RG6 208 aaPredicted RBP13.53□□□□□ -0.24
CPSF1-214ENST00000622776 C4orf48Q5BLP8 95 aa13.52□□□□□ -0.25
CPSF1-214ENST00000622776 URB1-AS1Q96HZ7 61 aa13.52□□□□□ -0.25
CPSF1-214ENST00000622776 LINC00158P58513 81 aa13.51□□□□□ -0.25
CPSF1-214ENST00000622776 TMEM170BQ5T4T1 132 aa13.51□□□□□ -0.25
CPSF1-214ENST00000622776 HBDP02042 147 aa13.5□□□□□ -0.25
CPSF1-214ENST00000622776 BAGE3Q86Y29 109 aa13.5□□□□□ -0.25
CPSF1-214ENST00000622776 SEC11CQ9BY50 192 aa13.5□□□□□ -0.25
CPSF1-214ENST00000622776 ZNF706Q9Y5V0 76 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-214ENST00000622776 LINC00614P0C842 121 aa13.49□□□□□ -0.25
CPSF1-214ENST00000622776 PMCHL1Q16048 86 aa13.48□□□□□ -0.25
CPSF1-214ENST00000622776 LINC00337Q8N6G1 96 aa13.48□□□□□ -0.25
CPSF1-214ENST00000622776 A0A0U1RRA0 63 aa13.47□□□□□ -0.25
CPSF1-214ENST00000622776 DAND5Q8N907 189 aa13.47□□□□□ -0.25
CPSF1-214ENST00000622776 C18orf32Q8TCD1 76 aa13.47□□□□□ -0.25
CPSF1-214ENST00000622776 KRTAP13-3Q3SY46 172 aa13.46□□□□□ -0.25
CPSF1-214ENST00000622776 Q8NBF4 154 aa13.46□□□□□ -0.25
CPSF1-214ENST00000622776 PRYO14603 147 aa13.44□□□□□ -0.26
CPSF1-214ENST00000622776 ASB16-AS1Q495Z4 193 aa13.43□□□□□ -0.26
CPSF1-214ENST00000622776 SMCR5Q8TEV8 140 aa13.42□□□□□ -0.26
CPSF1-214ENST00000622776 CHTOPQ9Y3Y2 248 aaKnown RBP13.42□□□□□ -0.26
CPSF1-214ENST00000622776 TRAPPC1Q9Y5R8 145 aa13.42□□□□□ -0.26
CPSF1-214ENST00000622776 SPRR1AP35321 89 aa13.41□□□□□ -0.26
CPSF1-214ENST00000622776 BOD1L2Q8IYS8 172 aa13.41□□□□□ -0.26
CPSF1-214ENST00000622776 RPS10P5Q9NQ39 176 aa13.41□□□□□ -0.26
CPSF1-214ENST00000622776 TMEM223A0PJW6 202 aa13.4□□□□□ -0.26
CPSF1-214ENST00000622776 SPINK1P00995 79 aa13.4□□□□□ -0.26
CPSF1-214ENST00000622776 SMIM13P0DJ93 91 aa13.4□□□□□ -0.26
CPSF1-214ENST00000622776 KCNQ1DNQ9H478 68 aa13.4□□□□□ -0.26
CPSF1-214ENST00000622776 ATP6V1G1O75348 118 aa13.39□□□□□ -0.27
CPSF1-214ENST00000622776 NCR3O14931 201 aa13.38□□□□□ -0.27
CPSF1-214ENST00000622776 RHEBQ15382 184 aa13.38□□□□□ -0.27
CPSF1-214ENST00000622776 ETDCA0A1B0GVM5 59 aa13.37□□□□□ -0.27
CPSF1-214ENST00000622776 KRTAP4-16G5E9R7 235 aaPredicted RBP13.37□□□□□ -0.27
CPSF1-214ENST00000622776 C10orf91Q5T1B1 145 aa13.36□□□□□ -0.27
CPSF1-214ENST00000622776 MIR7-3HGQ8N6C7 128 aa13.36□□□□□ -0.27
CPSF1-214ENST00000622776 LINC01547P58512 204 aaPredicted RBP13.35□□□□□ -0.27
CPSF1-214ENST00000622776 IFITM2Q01629 132 aa13.35□□□□□ -0.27
CPSF1-214ENST00000622776 LINC00483Q53H64 154 aa13.35□□□□□ -0.27
CPSF1-214ENST00000622776 MEIG1Q5JSS6 88 aa13.35□□□□□ -0.27
CPSF1-214ENST00000622776 KRTAP4-1Q9BYQ7 146 aa13.35□□□□□ -0.27
CPSF1-214ENST00000622776 TRBV10-3A0A0K0K1G6 114 aa13.33□□□□□ -0.28
CPSF1-214ENST00000622776 SEC61BP60468 96 aaKnown RBP13.33□□□□□ -0.28
CPSF1-214ENST00000622776 COMMD7Q86VX2 200 aa13.33□□□□□ -0.28
CPSF1-214ENST00000622776 TRAV12-1A0A0B4J245 112 aa13.32□□□□□ -0.28
CPSF1-214ENST00000622776 GAGE2AQ6NT46 116 aa13.32□□□□□ -0.28
CPSF1-214ENST00000622776 HERV-K104P63124 156 aa13.31□□□□□ -0.28
CPSF1-214ENST00000622776 IFI27L1Q96BM0 104 aa13.3□□□□□ -0.28
CPSF1-214ENST00000622776 NDUFA12Q9UI09 145 aa13.3□□□□□ -0.28
CPSF1-214ENST00000622776 MOBPQ13875 183 aa13.29□□□□□ -0.28
CPSF1-214ENST00000622776 IGLV9-49A0A0B4J1Y8 123 aa13.28□□□□□ -0.28
CPSF1-214ENST00000622776 LINC00587B1AMM8 73 aa13.28□□□□□ -0.28
CPSF1-214ENST00000622776 RPS29P62273 56 aaKnown RBP13.28□□□□□ -0.28
CPSF1-214ENST00000622776 SSBP3-AS1Q7Z2R9 100 aa13.28□□□□□ -0.28
CPSF1-214ENST00000622776 B5MCH6 92 aa13.27□□□□□ -0.29
CPSF1-214ENST00000622776 ERC2-IT1O76042 136 aa13.27□□□□□ -0.29
CPSF1-214ENST00000622776 S100A12P80511 92 aa13.27□□□□□ -0.29
CPSF1-214ENST00000622776 Q8N377 158 aa13.27□□□□□ -0.29
CPSF1-214ENST00000622776 FAM19A2Q8N3H0 131 aa13.26□□□□□ -0.29
CPSF1-214ENST00000622776 MAP1LC3CQ9BXW4 147 aa13.25□□□□□ -0.29
CPSF1-214ENST00000622776 MYMXA0A1B0GTQ4 84 aa13.24□□□□□ -0.29
CPSF1-214ENST00000622776 CHCHD1Q96BP2 118 aaKnown RBP13.24□□□□□ -0.29
CPSF1-214ENST00000622776 LCE2DQ5TA82 110 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-214ENST00000622776 SLC25A20O43772 301 aa13.22□□□□□ -0.29
CPSF1-214ENST00000622776 DDTP30046 118 aa13.21□□□□□ -0.29
CPSF1-214ENST00000622776 Q9BRP9 147 aa13.21□□□□□ -0.29
CPSF1-214ENST00000622776 LOC107984156A0A0G2JMH3 177 aa13.2□□□□□ -0.3
CPSF1-214ENST00000622776 ARL17AQ8IVW1 177 aa13.2□□□□□ -0.3
CPSF1-214ENST00000622776 TRBV10-2A0A0K0K1G8 114 aa13.19□□□□□ -0.3
CPSF1-214ENST00000622776 XP32Q5T750 250 aa13.19□□□□□ -0.3
CPSF1-214ENST00000622776 Q6ZRX8 168 aa13.18□□□□□ -0.3
CPSF1-214ENST00000622776 TSPEAR-AS2P59090 65 aa13.17□□□□□ -0.3
CPSF1-214ENST00000622776 APOC3P02656 99 aa13.15□□□□□ -0.3
CPSF1-214ENST00000622776 SPANXB1Q9NS25 103 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-214ENST00000622776 H0Y8G0 127 aa13.13□□□□□ -0.31
CPSF1-214ENST00000622776 LEPROTO15243 131 aa13.13□□□□□ -0.31
CPSF1-214ENST00000622776 HSBP1O75506 76 aa13.12□□□□□ -0.31
CPSF1-214ENST00000622776 C9orf153Q5TBE3 101 aa13.12□□□□□ -0.31
CPSF1-214ENST00000622776 SNAPINO95295 136 aa13.11□□□□□ -0.31
CPSF1-214ENST00000622776 IGLV6-57P01721 117 aa13.11□□□□□ -0.31
CPSF1-214ENST00000622776 JOSD1Q15040 202 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-214ENST00000622776 S100A7L2Q5SY68 101 aa13.1□□□□□ -0.31
CPSF1-214ENST00000622776 YPEL4Q96NS1 127 aa13.1□□□□□ -0.31
CPSF1-214ENST00000622776 MIEN1Q9BRT3 115 aa13.1□□□□□ -0.31
CPSF1-214ENST00000622776 LCE2CQ5TA81 110 aa13.09□□□□□ -0.31
CPSF1-214ENST00000622776 SVBPQ8N300 66 aa13.09□□□□□ -0.31
CPSF1-214ENST00000622776 FSIP2Q5CZC0 6907 aa13.08□□□□□ -0.32
CPSF1-214ENST00000622776 J3QQQ9 107 aa13.08□□□□□ -0.32
CPSF1-214ENST00000622776 NDUFC2O95298 119 aa13.08□□□□□ -0.32
CPSF1-214ENST00000622776 TRAV23DV6A0A075B6W5 121 aa13.07□□□□□ -0.32
CPSF1-214ENST00000622776 CRCT1Q9UGL9 99 aa13.07□□□□□ -0.32
CPSF1-214ENST00000622776 NDUFA5Q16718 116 aa13.06□□□□□ -0.32
CPSF1-214ENST00000622776 PLNP26678 52 aa13.05□□□□□ -0.32
CPSF1-214ENST00000622776 ST20-AS1Q8NBB2 130 aa13.05□□□□□ -0.32
CPSF1-214ENST00000622776 ZNF73O43830 326 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms