RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 SFTA2Q6UW10 78 aa14.24□□□□□ -0.13
PTPRF-216ENST00000617451 SEC11CQ9BY50 192 aa14.24□□□□□ -0.13
PTPRF-216ENST00000617451 URB1-AS1Q96HZ7 61 aa14.23□□□□□ -0.13
PTPRF-216ENST00000617451 C11orf86A6NJI1 115 aa14.22□□□□□ -0.13
PTPRF-216ENST00000617451 SPRR4Q96PI1 79 aa14.22□□□□□ -0.13
PTPRF-216ENST00000617451 HBDP02042 147 aa14.2□□□□□ -0.14
PTPRF-216ENST00000617451 LINC00614P0C842 121 aa14.2□□□□□ -0.14
PTPRF-216ENST00000617451 TMEM170BQ5T4T1 132 aa14.2□□□□□ -0.14
PTPRF-216ENST00000617451 BAGE3Q86Y29 109 aa14.19□□□□□ -0.14
PTPRF-216ENST00000617451 LINC00158P58513 81 aa14.18□□□□□ -0.14
PTPRF-216ENST00000617451 PMCHL1Q16048 86 aa14.18□□□□□ -0.14
PTPRF-216ENST00000617451 FP248Q71RG6 208 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-216ENST00000617451 C18orf32Q8TCD1 76 aa14.18□□□□□ -0.14
PTPRF-216ENST00000617451 KRTAP9-6A0A140TA67 174 aa14.15□□□□□ -0.14
PTPRF-216ENST00000617451 C4orf48Q5BLP8 95 aa14.15□□□□□ -0.14
PTPRF-216ENST00000617451 ZNF706Q9Y5V0 76 aaPredicted RBP14.15□□□□□ -0.14
PTPRF-216ENST00000617451 A0A0U1RRA0 63 aa14.13□□□□□ -0.15
PTPRF-216ENST00000617451 RPS10P5Q9NQ39 176 aa14.12□□□□□ -0.15
PTPRF-216ENST00000617451 TRAPPC1Q9Y5R8 145 aa14.12□□□□□ -0.15
PTPRF-216ENST00000617451 PRYO14603 147 aa14.11□□□□□ -0.15
PTPRF-216ENST00000617451 RHEBQ15382 184 aa14.11□□□□□ -0.15
PTPRF-216ENST00000617451 KRTAP13-3Q3SY46 172 aa14.11□□□□□ -0.15
PTPRF-216ENST00000617451 DAND5Q8N907 189 aa14.11□□□□□ -0.15
PTPRF-216ENST00000617451 Q8NBF4 154 aa14.11□□□□□ -0.15
PTPRF-216ENST00000617451 CHTOPQ9Y3Y2 248 aaKnown RBP14.11□□□□□ -0.15
PTPRF-216ENST00000617451 IFITM2Q01629 132 aa14.1□□□□□ -0.15
PTPRF-216ENST00000617451 C10orf91Q5T1B1 145 aa14.1□□□□□ -0.15
PTPRF-216ENST00000617451 LINC00337Q8N6G1 96 aa14.1□□□□□ -0.15
PTPRF-216ENST00000617451 TMEM223A0PJW6 202 aa14.09□□□□□ -0.15
PTPRF-216ENST00000617451 SPRR1AP35321 89 aa14.09□□□□□ -0.15
PTPRF-216ENST00000617451 BOD1L2Q8IYS8 172 aa14.08□□□□□ -0.16
PTPRF-216ENST00000617451 KCNQ1DNQ9H478 68 aa14.08□□□□□ -0.16
PTPRF-216ENST00000617451 SMIM13P0DJ93 91 aa14.07□□□□□ -0.16
PTPRF-216ENST00000617451 ASB16-AS1Q495Z4 193 aa14.07□□□□□ -0.16
PTPRF-216ENST00000617451 SMCR5Q8TEV8 140 aa14.07□□□□□ -0.16
PTPRF-216ENST00000617451 KRTAP4-16G5E9R7 235 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-216ENST00000617451 SPINK1P00995 79 aa14.06□□□□□ -0.16
PTPRF-216ENST00000617451 ATP6V1G1O75348 118 aa14.05□□□□□ -0.16
PTPRF-216ENST00000617451 COMMD7Q86VX2 200 aa14.05□□□□□ -0.16
PTPRF-216ENST00000617451 NCR3O14931 201 aa14.04□□□□□ -0.16
PTPRF-216ENST00000617451 LINC00483Q53H64 154 aa14.03□□□□□ -0.16
PTPRF-216ENST00000617451 MIR7-3HGQ8N6C7 128 aa14.03□□□□□ -0.16
PTPRF-216ENST00000617451 TRAV12-1A0A0B4J245 112 aa14.02□□□□□ -0.17
PTPRF-216ENST00000617451 ETDCA0A1B0GVM5 59 aa14.02□□□□□ -0.17
PTPRF-216ENST00000617451 MEIG1Q5JSS6 88 aa14.02□□□□□ -0.17
PTPRF-216ENST00000617451 TRBV10-3A0A0K0K1G6 114 aa13.99□□□□□ -0.17
PTPRF-216ENST00000617451 HERV-K104P63124 156 aa13.99□□□□□ -0.17
PTPRF-216ENST00000617451 IFI27L1Q96BM0 104 aa13.99□□□□□ -0.17
PTPRF-216ENST00000617451 KRTAP4-1Q9BYQ7 146 aa13.98□□□□□ -0.17
PTPRF-216ENST00000617451 LINC00587B1AMM8 73 aa13.96□□□□□ -0.17
PTPRF-216ENST00000617451 GAGE2AQ6NT46 116 aa13.96□□□□□ -0.17
PTPRF-216ENST00000617451 LINC01547P58512 204 aaPredicted RBP13.95□□□□□ -0.18
PTPRF-216ENST00000617451 SEC61BP60468 96 aaKnown RBP13.95□□□□□ -0.18
PTPRF-216ENST00000617451 CHCHD1Q96BP2 118 aaKnown RBP13.95□□□□□ -0.18
PTPRF-216ENST00000617451 B5MCH6 92 aa13.94□□□□□ -0.18
PTPRF-216ENST00000617451 RPS29P62273 56 aaKnown RBP13.94□□□□□ -0.18
PTPRF-216ENST00000617451 NDUFA12Q9UI09 145 aa13.94□□□□□ -0.18
PTPRF-216ENST00000617451 ERC2-IT1O76042 136 aa13.93□□□□□ -0.18
PTPRF-216ENST00000617451 MOBPQ13875 183 aa13.93□□□□□ -0.18
PTPRF-216ENST00000617451 SSBP3-AS1Q7Z2R9 100 aa13.93□□□□□ -0.18
PTPRF-216ENST00000617451 Q8N377 158 aa13.93□□□□□ -0.18
PTPRF-216ENST00000617451 S100A12P80511 92 aa13.92□□□□□ -0.18
PTPRF-216ENST00000617451 MAP1LC3CQ9BXW4 147 aa13.92□□□□□ -0.18
PTPRF-216ENST00000617451 IGLV9-49A0A0B4J1Y8 123 aa13.91□□□□□ -0.18
PTPRF-216ENST00000617451 MYMXA0A1B0GTQ4 84 aa13.91□□□□□ -0.18
PTPRF-216ENST00000617451 FAM19A2Q8N3H0 131 aa13.9□□□□□ -0.18
PTPRF-216ENST00000617451 LOC107984156A0A0G2JMH3 177 aa13.89□□□□□ -0.19
PTPRF-216ENST00000617451 ARL17AQ8IVW1 177 aa13.89□□□□□ -0.19
PTPRF-216ENST00000617451 Q9BRP9 147 aa13.88□□□□□ -0.19
PTPRF-216ENST00000617451 TRBV10-2A0A0K0K1G8 114 aa13.87□□□□□ -0.19
PTPRF-216ENST00000617451 DDTP30046 118 aa13.87□□□□□ -0.19
PTPRF-216ENST00000617451 SLC25A20O43772 301 aa13.86□□□□□ -0.19
PTPRF-216ENST00000617451 APOC3P02656 99 aa13.86□□□□□ -0.19
PTPRF-216ENST00000617451 TSPEAR-AS2P59090 65 aa13.85□□□□□ -0.19
PTPRF-216ENST00000617451 Q6ZRX8 168 aa13.85□□□□□ -0.19
PTPRF-216ENST00000617451 XP32Q5T750 250 aa13.83□□□□□ -0.2
PTPRF-216ENST00000617451 LCE2DQ5TA82 110 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-216ENST00000617451 YPEL4Q96NS1 127 aa13.83□□□□□ -0.2
PTPRF-216ENST00000617451 SNAPINO95295 136 aa13.82□□□□□ -0.2
PTPRF-216ENST00000617451 LEPROTO15243 131 aa13.81□□□□□ -0.2
PTPRF-216ENST00000617451 HSBP1O75506 76 aa13.81□□□□□ -0.2
PTPRF-216ENST00000617451 SVBPQ8N300 66 aa13.81□□□□□ -0.2
PTPRF-216ENST00000617451 SPANXB1Q9NS25 103 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-216ENST00000617451 H0Y8G0 127 aa13.79□□□□□ -0.2
PTPRF-216ENST00000617451 IGLV6-57P01721 117 aa13.79□□□□□ -0.2
PTPRF-216ENST00000617451 NDUFA5Q16718 116 aa13.77□□□□□ -0.21
PTPRF-216ENST00000617451 J3QQQ9 107 aa13.76□□□□□ -0.21
PTPRF-216ENST00000617451 NDUFC2O95298 119 aa13.76□□□□□ -0.21
PTPRF-216ENST00000617451 S100A7L2Q5SY68 101 aa13.76□□□□□ -0.21
PTPRF-216ENST00000617451 MIEN1Q9BRT3 115 aa13.76□□□□□ -0.21
PTPRF-216ENST00000617451 JOSD1Q15040 202 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-216ENST00000617451 C9orf153Q5TBE3 101 aa13.75□□□□□ -0.21
PTPRF-216ENST00000617451 PLNP26678 52 aa13.74□□□□□ -0.21
PTPRF-216ENST00000617451 FSIP2Q5CZC0 6907 aa13.73□□□□□ -0.21
PTPRF-216ENST00000617451 TRAV23DV6A0A075B6W5 121 aa13.73□□□□□ -0.21
PTPRF-216ENST00000617451 LEPROTL1O95214 131 aa13.72□□□□□ -0.21
PTPRF-216ENST00000617451 NMUP48645 174 aa13.72□□□□□ -0.21
PTPRF-216ENST00000617451 LCE2CQ5TA81 110 aa13.71□□□□□ -0.21
PTPRF-216ENST00000617451 ZNF73O43830 326 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-216ENST00000617451 ST20-AS1Q8NBB2 130 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 170.8 ms